Clone BS14957 Report

Search the DGRC for BS14957

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:149
Well:57
Vector:pDNR-Dual
Associated Gene/TranscriptCdk9-RA
Protein status:BS14957.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14957.3prime Sequence

829 bp (763 high quality bases) assembled on 2006-10-13

> BS14957.3prime
ATGGTCTAGAAAGCTTCTACCAAACCCGGTCAATCATACTGTTGTCCTGG
GGCTTCTGGTTCATGGTGGTCAGTTGCTGGTGATAGTTGCGCATCTGGTT
GCTGCGGCGTGGCTGCGCCAGGTACTCGAACATGCTCTGCAGGTGCTGGG
ACAGCATCTTGCTCAAGTCGCTGGGCATGGGATCCGTCCAGAAGAAGTCG
TGATTCAGAGCTGTGTCCGCATCGATGCGTTTCTTGGGATCAAGGGTCAG
CAATTTGTCCAATAGATCACAGCCGGTTTGATCCTTGACATACGGACGCA
GGCGCTCCTTGACTCGACGCTTCTGGTTCTTTGGCAGCTCGATGGATTTG
TACAGCTCCAGCTCCTCCACTCCCGGCCACACGTCCGGCGTAAAGGAGCC
GCATAGCTGCGAGATAAAGGTTAGCTGCTGCTGCTCCGTATTGCCTTGCA
TGATGGGCGAGCGTGTCCACATCTCGGCCATTATGCAGCCGGCTCCCCAC
ATGTCCACGGGTGGACCATAGTTGCGGTCACCAAGTAGCAGCTCAGGCGG
CCGGTACCACAAGGTTACTACGCGATTGGTATAGCGATTCTTACTCTCGT
TCTTTGGAATGCTAAAAGCACGGGCCAAGCCAAAGTCAGCCAGCTTTAAG
ATGCCATGCTTGGTAATCAGCACGTTGGCAGCTTTCATGTCTCGGTGCAG
GATCTTGTTGCTGTGGATGTAATACAAACCGTTTAAAAGCTGCTGCATAA
CCTTCTTAATCTCGCCCAGACTGAACTTGACGTTCATGTTGGACAAAAGA
CCTGCCAAATCGTGTTCGCAAAAATCAAA

BS14957.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG5179-PA 1215 Cdk9-RA 403..1215 829..17 4015 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:53:42
Subject Length Description Subject Range Query Range Score Percent Strand
Cdk9-RA 1476 CG5179-RA 540..1353 829..16 4040 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:53:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22636186..22636875 16..705 3450 100 Plus
2R 25286936 2R 22636942..22637067 704..829 600 98.4 Plus
Blast to na_te.dros performed on 2015-02-03 06:53:39 has no hits.

BS14957.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:22 Download gff for BS14957.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5179-PA 406..1215 17..826 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:32:58 Download gff for BS14957.3prime
Subject Subject Range Query Range Percent Splice Strand
Cdk9-RA 543..1355 12..826 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:40:23 Download gff for BS14957.3prime
Subject Subject Range Query Range Percent Splice Strand
Cdk9-RA 543..1355 12..826 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:40:23 Download gff for BS14957.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22636184..22636873 12..703 99 <- Plus
2R 22636942..22637064 704..826 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:32:58 Download gff for BS14957.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18524447..18524569 704..826 98   Plus
arm_2R 18523689..18524378 12..703 99 <- Plus

BS14957.5prime Sequence

820 bp (801 high quality bases) assembled on 2006-10-13

> BS14957.5prime
GAAGTTATCAGTCGACATGGCGCACATGTCCCACATGCTCCAGCAGCCTT
CGGGGTCGACGCCCTCCAACGTGGGCTCCAGCTCATCGCGCACGATGTCC
CTGATGGAGAAACAAAAGTACATCGAGGACTACGACTTTCCCTACTGCGA
CGAGAGCAACAAATACGAAAAGGTGGCGAAAATTGGCCAAGGCACCTTCG
GAGAGGTTTTTAAGGCTCGCGAGAAAAAGGGCAACAAGAAGTTTGTGGCC
ATGAAGAAGGTGCTGATGGACAACGAAAAGGAGGGCTTTCCCATCACGGC
TCTGCGAGAGATCCGCATCCTGCAGCTGCTAAAGCACGAGAACGTGGTGA
ATCTGATCGAGATCTGCCGCACCAAGGCCACCGCCACGAATGGTTACAGA
TCCACCTTCTATTTGGTCTTTGATTTCTGCGAACACGATTTGGCAGGTCT
TCTGTCCAACATGAACGTCAAGTTCAGTCTGGGCGAGATTAAGAAGGTTA
TGCAGCAGCTTTTAAACGGTTTGTATTACATCCACAGCAACAAGATCCTG
CACCGAGACATGAAAGCTGCCAACGTGCTGATTACCAAGCATGGCATCTT
AAAGCTGGCTGACTTTGGCTTGGCCCGTGCTTTTAGCATTCCAAAGAACG
AGAGTAAGAATCGCTATACCAATCGCGTAGTAACCTTGTGGTACCGGCCG
CCTGAGCTGCTACTTGGTGACCGCAACTATGGTCCACCCGTGGACATGTG
GGGAGCCGGCTGCATAATGGCCGAGATGTGGACACGCTCGCCCATCATGC
AAGGCAATACGGAGCAGCAG

BS14957.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG5179-PA 1215 Cdk9-RA 1..804 17..820 4020 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:40:18
Subject Length Description Subject Range Query Range Score Percent Strand
Cdk9-RA 1476 CG5179-RA 137..941 16..820 4025 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:40:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22636598..22636875 820..543 1390 100 Minus
2R 25286936 2R 22636942..22637199 544..287 1290 100 Minus
2R 25286936 2R 22637406..22637591 201..16 930 100 Minus
2R 25286936 2R 22637259..22637344 286..201 430 100 Minus
Blast to na_te.dros performed on 2015-02-06 10:40:14 has no hits.

BS14957.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:22 Download gff for BS14957.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5179-PA 1..804 17..820 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:44:03 Download gff for BS14957.5prime
Subject Subject Range Query Range Percent Splice Strand
Cdk9-RA 137..941 16..820 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:28:14 Download gff for BS14957.5prime
Subject Subject Range Query Range Percent Splice Strand
Cdk9-RA 137..941 16..820 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:28:14 Download gff for BS14957.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22636598..22636873 545..820 100 <- Minus
2R 22636942..22637199 287..544 100 <- Minus
2R 22637259..22637343 202..286 100 <- Minus
2R 22637406..22637591 16..201 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:44:03 Download gff for BS14957.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18524103..18524378 545..820 100 <- Minus
arm_2R 18524447..18524704 287..544 100 <- Minus
arm_2R 18524764..18524848 202..286 100 <- Minus
arm_2R 18524911..18525096 16..201 100   Minus

BS14957.complete Sequence

1247 bp assembled on 2006-11-01

GenBank Submission: FJ637839

> BS14957.complete
GAAGTTATCAGTCGACATGGCGCACATGTCCCACATGCTCCAGCAGCCTT
CGGGGTCGACGCCCTCCAACGTGGGCTCCAGCTCATCGCGCACGATGTCC
CTGATGGAGAAACAAAAGTACATCGAGGACTACGACTTTCCCTACTGCGA
CGAGAGCAACAAATACGAAAAGGTGGCGAAAATTGGCCAAGGCACCTTCG
GAGAGGTTTTTAAGGCTCGCGAGAAAAAGGGCAACAAGAAGTTTGTGGCC
ATGAAGAAGGTGCTGATGGACAACGAAAAGGAGGGCTTTCCCATCACGGC
TCTGCGAGAGATCCGCATCCTGCAGCTGCTAAAGCACGAGAACGTGGTGA
ATCTGATCGAGATCTGCCGCACCAAGGCCACCGCCACGAATGGTTACAGA
TCCACCTTCTATTTGGTCTTTGATTTCTGCGAACACGATTTGGCAGGTCT
TCTGTCCAACATGAACGTCAAGTTCAGTCTGGGCGAGATTAAGAAGGTTA
TGCAGCAGCTTTTAAACGGTTTGTATTACATCCACAGCAACAAGATCCTG
CACCGAGACATGAAAGCTGCCAACGTGCTGATTACCAAGCATGGCATCTT
AAAGCTGGCTGACTTTGGCTTGGCCCGTGCTTTTAGCATTCCAAAGAACG
AGAGTAAGAATCGCTATACCAATCGCGTAGTAACCTTGTGGTACCGGCCG
CCTGAGCTGCTACTTGGTGACCGCAACTATGGTCCACCCGTGGACATGTG
GGGAGCCGGCTGCATAATGGCCGAGATGTGGACACGCTCGCCCATCATGC
AAGGCAATACGGAGCAGCAGCAGCTAACCTTTATCTCGCAGCTATGCGGC
TCCTTTACGCCGGACGTGTGGCCGGGAGTGGAGGAGCTGGAGCTGTACAA
ATCCATCGAGCTGCCAAAGAACCAGAAGCGTCGAGTCAAGGAGCGCCTGC
GTCCGTATGTCAAGGATCAAACCGGCTGTGATCTATTGGACAAATTGCTG
ACCCTTGATCCCAAGAAACGCATCGATGCGGACACAGCTCTGAATCACGA
CTTCTTCTGGACGGATCCCATGCCCAGCGACTTGAGCAAGATGCTGTCCC
AGCACCTGCAGAGCATGTTCGAGTACCTGGCGCAGCCACGCCGCAGCAAC
CAGATGCGCAACTATCACCAGCAACTGACCACCATGAACCAGAAGCCCCA
GGACAACAGTATGATTGACCGGGTTTGGTAGAAGCTTTCTAGACCAT

BS14957.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:15:16
Subject Length Description Subject Range Query Range Score Percent Strand
Cdk9-RA 1215 CG5179-PA 1..1215 17..1231 6075 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:15:17
Subject Length Description Subject Range Query Range Score Percent Strand
Cdk9-RA 1476 CG5179-RA 137..1353 16..1232 6085 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:15:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22636186..22636875 1232..543 3450 100 Minus
2R 25286936 2R 22636942..22637199 544..287 1290 100 Minus
2R 25286936 2R 22637406..22637591 201..16 930 100 Minus
2R 25286936 2R 22637259..22637344 286..201 430 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:15:15 has no hits.

BS14957.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:08 Download gff for BS14957.complete
Subject Subject Range Query Range Percent Splice Strand
Cdk9-RA 1..1215 17..1231 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:06:52 Download gff for BS14957.complete
Subject Subject Range Query Range Percent Splice Strand
Cdk9-RA 133..1351 16..1236 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:56:38 Download gff for BS14957.complete
Subject Subject Range Query Range Percent Splice Strand
Cdk9-RA 138..1352 17..1231 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:08 Download gff for BS14957.complete
Subject Subject Range Query Range Percent Splice Strand
Cdk9-RA 133..1351 16..1236 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:14:05 Download gff for BS14957.complete
Subject Subject Range Query Range Percent Splice Strand
Cdk9-RA 138..1352 17..1231 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:14:05 Download gff for BS14957.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22637406..22637590 17..201 100   Minus
2R 22636187..22636873 545..1231 100 <- Minus
2R 22636942..22637199 287..544 100 <- Minus
2R 22637259..22637343 202..286 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:56:38 Download gff for BS14957.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18524911..18525095 17..201 100   Minus
arm_2R 18523692..18524378 545..1231 100 <- Minus
arm_2R 18524447..18524704 287..544 100 <- Minus
arm_2R 18524764..18524848 202..286 100 <- Minus

BS14957.pep Sequence

Translation from 16 to 1230

> BS14957.pep
MAHMSHMLQQPSGSTPSNVGSSSSRTMSLMEKQKYIEDYDFPYCDESNKY
EKVAKIGQGTFGEVFKAREKKGNKKFVAMKKVLMDNEKEGFPITALREIR
ILQLLKHENVVNLIEICRTKATATNGYRSTFYLVFDFCEHDLAGLLSNMN
VKFSLGEIKKVMQQLLNGLYYIHSNKILHRDMKAANVLITKHGILKLADF
GLARAFSIPKNESKNRYTNRVVTLWYRPPELLLGDRNYGPPVDMWGAGCI
MAEMWTRSPIMQGNTEQQQLTFISQLCGSFTPDVWPGVEELELYKSIELP
KNQKRRVKERLRPYVKDQTGCDLLDKLLTLDPKKRIDADTALNHDFFWTD
PMPSDLSKMLSQHLQSMFEYLAQPRRSNQMRNYHQQLTTMNQKPQDNSMI
DRVW*

BS14957.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:29:12
Subject Length Description Subject Range Query Range Score Percent Strand
Cdk9-PA 404 CG5179-PA 1..404 1..404 2136 100 Plus
Cdk12-PC 1157 CG7597-PC 804..1136 50..387 719 44.6 Plus
Cdk12-PA 1157 CG7597-PA 804..1136 50..387 719 44.6 Plus
Cdk12-PB 1157 CG7597-PB 804..1136 50..387 719 44.6 Plus
cdc2rk-PA 387 CG1362-PA 44..349 41..359 592 39.5 Plus