Clone Sequence Records
BS14957.3prime Sequence
829 bp (763 high quality bases) assembled on 2006-10-13
> BS14957.3prime
ATGGTCTAGAAAGCTTCTACCAAACCCGGTCAATCATACTGTTGTCCTGG
GGCTTCTGGTTCATGGTGGTCAGTTGCTGGTGATAGTTGCGCATCTGGTT
GCTGCGGCGTGGCTGCGCCAGGTACTCGAACATGCTCTGCAGGTGCTGGG
ACAGCATCTTGCTCAAGTCGCTGGGCATGGGATCCGTCCAGAAGAAGTCG
TGATTCAGAGCTGTGTCCGCATCGATGCGTTTCTTGGGATCAAGGGTCAG
CAATTTGTCCAATAGATCACAGCCGGTTTGATCCTTGACATACGGACGCA
GGCGCTCCTTGACTCGACGCTTCTGGTTCTTTGGCAGCTCGATGGATTTG
TACAGCTCCAGCTCCTCCACTCCCGGCCACACGTCCGGCGTAAAGGAGCC
GCATAGCTGCGAGATAAAGGTTAGCTGCTGCTGCTCCGTATTGCCTTGCA
TGATGGGCGAGCGTGTCCACATCTCGGCCATTATGCAGCCGGCTCCCCAC
ATGTCCACGGGTGGACCATAGTTGCGGTCACCAAGTAGCAGCTCAGGCGG
CCGGTACCACAAGGTTACTACGCGATTGGTATAGCGATTCTTACTCTCGT
TCTTTGGAATGCTAAAAGCACGGGCCAAGCCAAAGTCAGCCAGCTTTAAG
ATGCCATGCTTGGTAATCAGCACGTTGGCAGCTTTCATGTCTCGGTGCAG
GATCTTGTTGCTGTGGATGTAATACAAACCGTTTAAAAGCTGCTGCATAA
CCTTCTTAATCTCGCCCAGACTGAACTTGACGTTCATGTTGGACAAAAGA
CCTGCCAAATCGTGTTCGCAAAAATCAAA
BS14957.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5179-PA | 1215 | Cdk9-RA | 403..1215 | 829..17 | 4015 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:53:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdk9-RA | 1476 | CG5179-RA | 540..1353 | 829..16 | 4040 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:53:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22636186..22636875 | 16..705 | 3450 | 100 | Plus |
2R | 25286936 | 2R | 22636942..22637067 | 704..829 | 600 | 98.4 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:53:39 has no hits.
BS14957.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:22 Download gff for
BS14957.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5179-PA | 406..1215 | 17..826 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:32:58 Download gff for
BS14957.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk9-RA | 543..1355 | 12..826 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:40:23 Download gff for
BS14957.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk9-RA | 543..1355 | 12..826 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:40:23 Download gff for
BS14957.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22636184..22636873 | 12..703 | 99 | <- | Plus |
2R | 22636942..22637064 | 704..826 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:32:58 Download gff for
BS14957.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18524447..18524569 | 704..826 | 98 | | Plus |
arm_2R | 18523689..18524378 | 12..703 | 99 | <- | Plus |
BS14957.5prime Sequence
820 bp (801 high quality bases) assembled on 2006-10-13
> BS14957.5prime
GAAGTTATCAGTCGACATGGCGCACATGTCCCACATGCTCCAGCAGCCTT
CGGGGTCGACGCCCTCCAACGTGGGCTCCAGCTCATCGCGCACGATGTCC
CTGATGGAGAAACAAAAGTACATCGAGGACTACGACTTTCCCTACTGCGA
CGAGAGCAACAAATACGAAAAGGTGGCGAAAATTGGCCAAGGCACCTTCG
GAGAGGTTTTTAAGGCTCGCGAGAAAAAGGGCAACAAGAAGTTTGTGGCC
ATGAAGAAGGTGCTGATGGACAACGAAAAGGAGGGCTTTCCCATCACGGC
TCTGCGAGAGATCCGCATCCTGCAGCTGCTAAAGCACGAGAACGTGGTGA
ATCTGATCGAGATCTGCCGCACCAAGGCCACCGCCACGAATGGTTACAGA
TCCACCTTCTATTTGGTCTTTGATTTCTGCGAACACGATTTGGCAGGTCT
TCTGTCCAACATGAACGTCAAGTTCAGTCTGGGCGAGATTAAGAAGGTTA
TGCAGCAGCTTTTAAACGGTTTGTATTACATCCACAGCAACAAGATCCTG
CACCGAGACATGAAAGCTGCCAACGTGCTGATTACCAAGCATGGCATCTT
AAAGCTGGCTGACTTTGGCTTGGCCCGTGCTTTTAGCATTCCAAAGAACG
AGAGTAAGAATCGCTATACCAATCGCGTAGTAACCTTGTGGTACCGGCCG
CCTGAGCTGCTACTTGGTGACCGCAACTATGGTCCACCCGTGGACATGTG
GGGAGCCGGCTGCATAATGGCCGAGATGTGGACACGCTCGCCCATCATGC
AAGGCAATACGGAGCAGCAG
BS14957.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:54:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5179-PA | 1215 | Cdk9-RA | 1..804 | 17..820 | 4020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:40:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdk9-RA | 1476 | CG5179-RA | 137..941 | 16..820 | 4025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:40:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22636598..22636875 | 820..543 | 1390 | 100 | Minus |
2R | 25286936 | 2R | 22636942..22637199 | 544..287 | 1290 | 100 | Minus |
2R | 25286936 | 2R | 22637406..22637591 | 201..16 | 930 | 100 | Minus |
2R | 25286936 | 2R | 22637259..22637344 | 286..201 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:40:14 has no hits.
BS14957.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:22 Download gff for
BS14957.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5179-PA | 1..804 | 17..820 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:44:03 Download gff for
BS14957.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk9-RA | 137..941 | 16..820 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:28:14 Download gff for
BS14957.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk9-RA | 137..941 | 16..820 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:28:14 Download gff for
BS14957.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22636598..22636873 | 545..820 | 100 | <- | Minus |
2R | 22636942..22637199 | 287..544 | 100 | <- | Minus |
2R | 22637259..22637343 | 202..286 | 100 | <- | Minus |
2R | 22637406..22637591 | 16..201 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:44:03 Download gff for
BS14957.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18524103..18524378 | 545..820 | 100 | <- | Minus |
arm_2R | 18524447..18524704 | 287..544 | 100 | <- | Minus |
arm_2R | 18524764..18524848 | 202..286 | 100 | <- | Minus |
arm_2R | 18524911..18525096 | 16..201 | 100 | | Minus |
BS14957.complete Sequence
1247 bp assembled on 2006-11-01
GenBank Submission: FJ637839
> BS14957.complete
GAAGTTATCAGTCGACATGGCGCACATGTCCCACATGCTCCAGCAGCCTT
CGGGGTCGACGCCCTCCAACGTGGGCTCCAGCTCATCGCGCACGATGTCC
CTGATGGAGAAACAAAAGTACATCGAGGACTACGACTTTCCCTACTGCGA
CGAGAGCAACAAATACGAAAAGGTGGCGAAAATTGGCCAAGGCACCTTCG
GAGAGGTTTTTAAGGCTCGCGAGAAAAAGGGCAACAAGAAGTTTGTGGCC
ATGAAGAAGGTGCTGATGGACAACGAAAAGGAGGGCTTTCCCATCACGGC
TCTGCGAGAGATCCGCATCCTGCAGCTGCTAAAGCACGAGAACGTGGTGA
ATCTGATCGAGATCTGCCGCACCAAGGCCACCGCCACGAATGGTTACAGA
TCCACCTTCTATTTGGTCTTTGATTTCTGCGAACACGATTTGGCAGGTCT
TCTGTCCAACATGAACGTCAAGTTCAGTCTGGGCGAGATTAAGAAGGTTA
TGCAGCAGCTTTTAAACGGTTTGTATTACATCCACAGCAACAAGATCCTG
CACCGAGACATGAAAGCTGCCAACGTGCTGATTACCAAGCATGGCATCTT
AAAGCTGGCTGACTTTGGCTTGGCCCGTGCTTTTAGCATTCCAAAGAACG
AGAGTAAGAATCGCTATACCAATCGCGTAGTAACCTTGTGGTACCGGCCG
CCTGAGCTGCTACTTGGTGACCGCAACTATGGTCCACCCGTGGACATGTG
GGGAGCCGGCTGCATAATGGCCGAGATGTGGACACGCTCGCCCATCATGC
AAGGCAATACGGAGCAGCAGCAGCTAACCTTTATCTCGCAGCTATGCGGC
TCCTTTACGCCGGACGTGTGGCCGGGAGTGGAGGAGCTGGAGCTGTACAA
ATCCATCGAGCTGCCAAAGAACCAGAAGCGTCGAGTCAAGGAGCGCCTGC
GTCCGTATGTCAAGGATCAAACCGGCTGTGATCTATTGGACAAATTGCTG
ACCCTTGATCCCAAGAAACGCATCGATGCGGACACAGCTCTGAATCACGA
CTTCTTCTGGACGGATCCCATGCCCAGCGACTTGAGCAAGATGCTGTCCC
AGCACCTGCAGAGCATGTTCGAGTACCTGGCGCAGCCACGCCGCAGCAAC
CAGATGCGCAACTATCACCAGCAACTGACCACCATGAACCAGAAGCCCCA
GGACAACAGTATGATTGACCGGGTTTGGTAGAAGCTTTCTAGACCAT
BS14957.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:15:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdk9-RA | 1215 | CG5179-PA | 1..1215 | 17..1231 | 6075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:15:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdk9-RA | 1476 | CG5179-RA | 137..1353 | 16..1232 | 6085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:15:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22636186..22636875 | 1232..543 | 3450 | 100 | Minus |
2R | 25286936 | 2R | 22636942..22637199 | 544..287 | 1290 | 100 | Minus |
2R | 25286936 | 2R | 22637406..22637591 | 201..16 | 930 | 100 | Minus |
2R | 25286936 | 2R | 22637259..22637344 | 286..201 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:15:15 has no hits.
BS14957.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:08 Download gff for
BS14957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk9-RA | 1..1215 | 17..1231 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:06:52 Download gff for
BS14957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk9-RA | 133..1351 | 16..1236 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:56:38 Download gff for
BS14957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk9-RA | 138..1352 | 17..1231 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:08 Download gff for
BS14957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk9-RA | 133..1351 | 16..1236 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:14:05 Download gff for
BS14957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk9-RA | 138..1352 | 17..1231 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:14:05 Download gff for
BS14957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22637406..22637590 | 17..201 | 100 | | Minus |
2R | 22636187..22636873 | 545..1231 | 100 | <- | Minus |
2R | 22636942..22637199 | 287..544 | 100 | <- | Minus |
2R | 22637259..22637343 | 202..286 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:56:38 Download gff for
BS14957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18524911..18525095 | 17..201 | 100 | | Minus |
arm_2R | 18523692..18524378 | 545..1231 | 100 | <- | Minus |
arm_2R | 18524447..18524704 | 287..544 | 100 | <- | Minus |
arm_2R | 18524764..18524848 | 202..286 | 100 | <- | Minus |
BS14957.pep Sequence
Translation from 16 to 1230
> BS14957.pep
MAHMSHMLQQPSGSTPSNVGSSSSRTMSLMEKQKYIEDYDFPYCDESNKY
EKVAKIGQGTFGEVFKAREKKGNKKFVAMKKVLMDNEKEGFPITALREIR
ILQLLKHENVVNLIEICRTKATATNGYRSTFYLVFDFCEHDLAGLLSNMN
VKFSLGEIKKVMQQLLNGLYYIHSNKILHRDMKAANVLITKHGILKLADF
GLARAFSIPKNESKNRYTNRVVTLWYRPPELLLGDRNYGPPVDMWGAGCI
MAEMWTRSPIMQGNTEQQQLTFISQLCGSFTPDVWPGVEELELYKSIELP
KNQKRRVKERLRPYVKDQTGCDLLDKLLTLDPKKRIDADTALNHDFFWTD
PMPSDLSKMLSQHLQSMFEYLAQPRRSNQMRNYHQQLTTMNQKPQDNSMI
DRVW*
BS14957.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:29:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdk9-PA | 404 | CG5179-PA | 1..404 | 1..404 | 2136 | 100 | Plus |
Cdk12-PC | 1157 | CG7597-PC | 804..1136 | 50..387 | 719 | 44.6 | Plus |
Cdk12-PA | 1157 | CG7597-PA | 804..1136 | 50..387 | 719 | 44.6 | Plus |
Cdk12-PB | 1157 | CG7597-PB | 804..1136 | 50..387 | 719 | 44.6 | Plus |
cdc2rk-PA | 387 | CG1362-PA | 44..349 | 41..359 | 592 | 39.5 | Plus |