Clone Sequence Records
BS14960.3prime Sequence
890 bp (768 high quality bases) assembled on 2006-10-13
> BS14960.3prime
ATGGTCTAGAAAGCTTTTACAAGGTTTCCTTTTGCATCTGAAGATAGCCG
AGCTCGTAGAATTCCATCACCAACTCCCGTATGCGCATATGGTACTCGGA
AGTGAGCATCTGGGTGCACTTGATCTCCTTGCCCGTGAGATTCTGTTCAC
TCATCACGTCCAGGTTGGGTAGGTTATTCGGATCGAAGGTAACAGCTGGA
AGGATCCACATGCCGATAGCCAGTCCATAATGCACCTGTCGAACATAATC
CGAACTGAGGCGCTGCAAGGAGAATGCTTCACATAGCTCTTCTAGCCTTT
CGGCAGCGGTTGTATCCTCCAGCTGGTGCCTTAGTTCCTCACTCAAAGCC
TGCGAGTAGGCGGCCAGCAGGGTGTCCGTGTGCACATCCCTGAGTGGCCT
TCTCGTGCTGGTGTAAATGAAGTGGAGAATGTCAAAAATAGGCGACGACT
TGCGCATGGCCTGCAGGTCGAAGAAGATCACCTCCTCTGGCTCAGAGCGG
AACATAATGTTGTTTACCCAAAGGTCACCATGGCAGATCACACTGTTTGG
AGCCGCCGCAGTGGCATTAATCTCGTGCTTTAGATTTTCAAACAGATTGG
TACGAAGTTCCTCGAGCAATCGAATGGGCGTGGTCAAGCAGTCGTCTGCA
TTGGCGTCGCCTAGACTTTCCAGAGCCTGCTGCACGGAGGTGTCTAGAAT
GGTGGCGTAAAAGTCCGTCGCCTCATCGCAGTAGACAATCTCTTGAAGAT
GATCAGCATGGAAGGCGAAGGAAGAGGATTCCAGCTCTTGAGCGGCCAGC
GAGGCAGCATGGAGTTGTGCAAGTTTCTTCATCACTAGAAGGCAGTCGCT
CAGTTCCCAGCCCGCCAGACGATCCTTCATGCGAAAACCC
BS14960.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:55:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5644-PA | 1380 | CG5644-RA | 507..1380 | 890..17 | 4345 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:53:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5644-RA | 1712 | CG5644-RA | 760..1633 | 890..17 | 4355 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:53:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8977474..8978285 | 17..828 | 4060 | 100 | Plus |
| 3L | 28110227 | 3L | 8978350..8978413 | 827..890 | 305 | 98.4 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:53:49 has no hits.
BS14960.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:24 Download gff for
BS14960.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5644-PA | 507..1380 | 17..890 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:33:00 Download gff for
BS14960.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5644-RA | 760..1645 | 6..890 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:40:25 Download gff for
BS14960.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5644-RA | 760..1645 | 6..890 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:40:25 Download gff for
BS14960.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8978350..8978413 | 827..890 | 98 | | Plus |
| 3L | 8977472..8978283 | 16..826 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:33:00 Download gff for
BS14960.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8970572..8971383 | 16..826 | 99 | <- | Plus |
| arm_3L | 8971450..8971513 | 827..890 | 98 | | Plus |
BS14960.5prime Sequence
832 bp (742 high quality bases) assembled on 2006-10-13
> BS14960.5prime
TGAAGTTATCAGTCGACATGGCTTTGGCAGCGGCACCAACAGCAGGACCT
TCGCATGGCGGCTTGGCATTGACCGTGAGTTCGGCCGGTGGCTACGATGG
TACCAATCAATACGAGGAGAACGCTGAGCACTTGCGTCAGCTGTTCAGCC
AGAGCAAACTGGTGTCCTTTAGCATTGCCCACATCGCGTGCTCCGCGGGC
AGTAGCAGTGGCGACAACTATATGTCCGTGGTGAAGCGTGTAACCATCTC
CCAGGCAGGAAAGGATCAGGATCCGGAGCTGGCTGGCAGTGAAATCGTCA
CGGTCATTGTGAAGCGACAAATTGCGAGCCTTTCGCGCCGGCAACTCTAC
CGATGCGAGGAGGCCTTCAGCAACGAGATCAACGCCTATCGGCACTTGGC
GCCCCTATTAGCTGCCCACAGTCGTCATCAGTTGTTTCCGGTATGCCACA
TTGCGGAGAGTCAAGATCGGCGGGATGCGGAAGGTGGAGAACCCATCATC
GTGCTTCAGGACCTCAAAGCCATGGGTTTTCGCATGAAGGATCGTCTGGC
GGGCTTGGAACTGAGCGACTGCCTTCTAGTGATGAAGAAACTTGCACAAC
TCCATGCTGCCTCGCTGGCCGCTCAAGAGCTGGAATCCTCTTCCTTCGCC
TTCCATGCTGATCATCTTCAAGAGATTGTCTACTGCGATGAGGCGACGGA
CTTTTACGCCACCATTCTAGACACCTCCGTGCAGCAGGCTCTGGAAAGTC
TAGGCGACGCCAATGCAGACGACTGCTTGACCACGCCCATTCAATTGCTC
GAGGAACTTCGTACCAATCTGTTTGAAAATCT
BS14960.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:55:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5644-PA | 1380 | CG5644-RA | 1..815 | 18..832 | 4050 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:54:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5644-RA | 1712 | CG5644-RA | 254..1068 | 18..832 | 4060 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:53:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8978350..8978640 | 587..297 | 1455 | 100 | Minus |
| 3L | 28110227 | 3L | 8979348..8979627 | 297..18 | 1400 | 100 | Minus |
| 3L | 28110227 | 3L | 8978039..8978285 | 832..586 | 1220 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:53:59 has no hits.
BS14960.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:25 Download gff for
BS14960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5644-PA | 1..815 | 18..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:33:02 Download gff for
BS14960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5644-RA | 252..1068 | 15..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:40:26 Download gff for
BS14960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5644-RA | 252..1068 | 15..832 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:40:26 Download gff for
BS14960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8978039..8978283 | 588..832 | 99 | <- | Minus |
| 3L | 8978350..8978639 | 298..587 | 100 | <- | Minus |
| 3L | 8979348..8979629 | 15..297 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:33:02 Download gff for
BS14960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8971450..8971739 | 298..587 | 100 | <- | Minus |
| arm_3L | 8971139..8971383 | 588..832 | 99 | <- | Minus |
| arm_3L | 8972448..8972729 | 15..297 | 99 | | Minus |
BS14960.complete Sequence
1412 bp assembled on 2008-08-14
GenBank Submission: FJ637840
> BS14960.complete
GAAGTTATCAGTCGACATGGCTTTGGCAGCGGCACCAACAGCAGGACCTT
CGCATGGCGGCTTGGCATTGACCGTGAGTTCGGCCGGTGGCTACGATGGT
ACCAATCAATACGAGGAGAACGCTGAGCACTTGCGTCAGCTGTTCAGCCA
GAGCAAACTGGTGTCCTTTAGCATTGCCCACATCGCGTGCTCCGCGGGCA
GTAGCAGTGGCGACAACTATATGTCCGTGGTGAAGCGTGTAACCATCTCC
CAGGCAGGAAAGGATCAGGATCCGGAGCTGGCTGGCAGTGAAATCGTCAC
GGTCATTGTGAAGCGACAAATTGCGAGCCTTTCGCGCCGGCAACTCTACC
GATGCGAGGAGGCCTTCAGCAACGAGATCAACGCCTATCGGCACTTGGCG
CCCCTATTAGCTGCCCACAGTCGTCATCAGTTGTTTCCGGTATGCCACAT
TGCGGAGAGTCAAGATCGGCGGGATGCGGAAGGTGGAGAACCCATCATCG
TGCTTCAGGACCTCAAAGCCATGGGTTTTCGCATGAAGGATCGTCTGGCG
GGCTTGGAACTGAGCGACTGCCTTCTAGTGATGAAGAAACTTGCACAACT
CCATGCTGCCTCGCTGGCCGCTCAAGAGCTGGAATCCTCTTCCTTCGCCT
TCCATGCTGATCATCTTCAAGAGATTGTCTACTGCGATGAGGCGACGGAC
TTTTACGCCACCATTCTAGACACCTCCGTGCAGCAGGCTCTGGAAAGTCT
AGGCGACGCCAATGCAGACGACTGCTTGACCACGCCCATTCGATTGCTCG
AGGAACTTCGTACCAATCTGTTTGAAAATCTAAAGCACGAGATTAATGCC
ACTGCGGCGGCTCCAAACAGTGTGATCTGCCATGGTGACCTTTGGGTAAA
CAACATTATGTTCCGCTCTGAGCCAGAGGAGGTGATCTTCTTCGACCTGC
AGGCCATGCGCAAGTCGTCGCCTATTTTTGACATTCTCCACTTCATTTAC
ACCAGCACGAGAAGGCCACTCAGGGATGTGCACACGGACACCCTGCTGGC
CGCCTACTCGCAGGCTTTGAGTGAGGAACTAAGGCACCAGCTGGAGGATA
CAACCGCTGCCGAAAGGCTAGAAGAGCTATGTGAAGCATTCTCCTTGCAG
CGCCTCAGTTCGGATTATGTTCGACAGGTGCATTATGGACTGGCTATCGG
CATGTGGATCCTTCCAGCTGTTACCTTCGATCCGAATAACCTACCCAACC
TGGACGTGATGAGTGAACAGAATCTCACGGGCAAGGAGATCAAGTGCACC
CAGATGCTCACTTCCGAGTACCATATGCGCATACGGGAGTTGGTGATGGA
ATTCTACGAGCTCGGCTATCTTCAGATGCAAAAGGAAACCTTGTAAAAGC
TTTCTAGACCAT
BS14960.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:41:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5644-RA | 1380 | CG5644-PA | 1..1380 | 17..1396 | 6900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:41:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5644-RA | 1712 | CG5644-RA | 254..1633 | 17..1396 | 6900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:41:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8977474..8978285 | 1396..585 | 4060 | 100 | Minus |
| 3L | 28110227 | 3L | 8978350..8978640 | 586..296 | 1455 | 100 | Minus |
| 3L | 28110227 | 3L | 8979348..8979627 | 296..17 | 1400 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:41:57 has no hits.
BS14960.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:09 Download gff for
BS14960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5644-RA | 1..1380 | 18..1397 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:42:39 Download gff for
BS14960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5644-RA | 252..1645 | 14..1407 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:15 Download gff for
BS14960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5644-RA | 254..1631 | 17..1394 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:10 Download gff for
BS14960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5644-RA | 252..1645 | 15..1408 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:06:37 Download gff for
BS14960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5644-RA | 254..1631 | 17..1394 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:06:37 Download gff for
BS14960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8977476..8978283 | 587..1394 | 100 | <- | Minus |
| 3L | 8978350..8978639 | 297..586 | 100 | <- | Minus |
| 3L | 8979348..8979627 | 17..296 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:15 Download gff for
BS14960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8970576..8971383 | 587..1394 | 100 | <- | Minus |
| arm_3L | 8971450..8971739 | 297..586 | 100 | <- | Minus |
| arm_3L | 8972448..8972727 | 17..296 | 100 | | Minus |
BS14960.pep Sequence
Translation from 16 to 1395
> BS14960.pep
MALAAAPTAGPSHGGLALTVSSAGGYDGTNQYEENAEHLRQLFSQSKLVS
FSIAHIACSAGSSSGDNYMSVVKRVTISQAGKDQDPELAGSEIVTVIVKR
QIASLSRRQLYRCEEAFSNEINAYRHLAPLLAAHSRHQLFPVCHIAESQD
RRDAEGGEPIIVLQDLKAMGFRMKDRLAGLELSDCLLVMKKLAQLHAASL
AAQELESSSFAFHADHLQEIVYCDEATDFYATILDTSVQQALESLGDANA
DDCLTTPIRLLEELRTNLFENLKHEINATAAAPNSVICHGDLWVNNIMFR
SEPEEVIFFDLQAMRKSSPIFDILHFIYTSTRRPLRDVHTDTLLAAYSQA
LSEELRHQLEDTTAAERLEELCEAFSLQRLSSDYVRQVHYGLAIGMWILP
AVTFDPNNLPNLDVMSEQNLTGKEIKCTQMLTSEYHMRIRELVMEFYELG
YLQMQKETL*
BS14960.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5644-PA | 459 | CG5644-PA | 1..459 | 1..459 | 2339 | 100 | Plus |
| CG2004-PG | 425 | CG2004-PG | 43..425 | 65..453 | 316 | 26.4 | Plus |
| CG2004-PF | 425 | CG2004-PF | 43..425 | 65..453 | 316 | 26.4 | Plus |
| CG2004-PD | 425 | CG2004-PD | 43..425 | 65..453 | 316 | 26.4 | Plus |
| CG2004-PC | 425 | CG2004-PC | 43..425 | 65..453 | 316 | 26.4 | Plus |
