Clone BS14962 Report

Search the DGRC for BS14962

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:149
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptCG9875-RA
Protein status:BS14962.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14962.5prime Sequence

504 bp (504 high quality bases) assembled on 2006-10-13

> BS14962.5prime
GAAGTTATCAGTCGACATGTGTTCCATACTCGCACGTGCAAGGATGTTTT
GTGCAGGAATAGTGCAGCGTAGACTGAGCATGGGTCTCAATCCAAAACTC
GGCCTGGCGCCCAGGAAGCTCTACTCCGAGGAGAAGAAGCCCCCGGGTGT
TTTCCTTTGGGGCGGCGGACTTGGCAAGCTGCAGGGCGGTCTCAAGGAGG
AGGAGTACTTCATTTCGTTGACCCAAACCCTCGTGGGCAAGATGCGGGAC
AAGAAGGAGCCCGGCGACTACCTGCCCAACTGGGACGAGTTCCAGAAGAC
TCTGGACCACGCCTCGCTGGGCAGCACCTCTTCCATGAACAAGCACAAGA
ACGTACTCGAGGAGGCCTTTTTCCTGAACAAGACTGCAGACGACATCAAA
TTATTGCACGATCGTGCCCAAGAAGAGCTCAAATCTCGCCATACTGCCAC
AGAACTGGAACTCGAATCAGATCCCCAGAACACCAAATAGAAGCTTTCTA
GACC

BS14962.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:55:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG9875-PA 474 CG9875-RA 1..474 17..490 2370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:21:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG9875-RB 730 CG9875-RB 96..569 17..490 2370 100 Plus
CG9875-RA 674 CG9875-RA 96..569 17..490 2370 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:20:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23357893..23358178 97..382 1430 100 Plus
2R 25286936 2R 23358238..23358347 381..490 550 100 Plus
2R 25286936 2R 23357755..23357834 17..96 400 100 Plus
Blast to na_te.dros performed on 2015-02-08 12:20:58 has no hits.

BS14962.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:26 Download gff for BS14962.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9875-PA 1..474 17..490 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:42:08 Download gff for BS14962.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9875-RA 92..575 12..496 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:46:39 Download gff for BS14962.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9875-RA 92..575 12..496 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:46:39 Download gff for BS14962.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23358240..23358353 383..496 97   Plus
2R 23357751..23357834 12..96 97 -> Plus
2R 23357893..23358178 97..382 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:42:08 Download gff for BS14962.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19245274..19245357 12..96 97 -> Plus
arm_2R 19245416..19245701 97..382 100 -> Plus
arm_2R 19245763..19245876 383..496 97   Plus

BS14962.3prime Sequence

504 bp (504 high quality bases) assembled on 2006-10-13

> BS14962.3prime
ATGGTCTAGAAAGCTTCTATTTGGTGTTCTGGGGATCTGATTCGAGTTCC
AGTTCTGTGGCAGTATGGCGAGATTTGAGCTCTTCTTGGGCACGATCGTG
CAATAATTTGATGTCGTCTGCAGTCTTGTTCAGGAAAAAGGCCTCCTCGA
GTACGTTCTTGTGCTTGTTCATGGAAGAGGTGCTGCCCAGCGAGGCGTGG
TCCAGAGTCTTCTGGAACTCGTCCCAGTTGGGCAGGTAGTCGCCGGGCTC
CTTCTTGTCCCGCATCTTGCCCACGAGGGTTTGGGTCAACGAAATGAAGT
ACTCCTCCTCCTTGAGACCGCCCTGCAGCTTGCCAAGTCCGCCGCCCCAA
AGGAAAACACCCGGGGGCTTCTTCTCCTCGGAGTAGAGCTTCCTGGGCGC
CAGGCCGAGTTTTGGATTGAGACCCATGCTCAGTCTACGCTGCACTATTC
CTGCACAAAACATCCTTGCACGTGCGAGTATGGAACACATGTCGACTGAT
AACT

BS14962.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:55:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG9875-PA 474 CG9875-RA 1..474 490..17 2370 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:22:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG9875-RB 730 CG9875-RB 96..569 490..17 2370 100 Minus
CG9875-RA 674 CG9875-RA 96..569 490..17 2370 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:22:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23357893..23358178 410..125 1430 100 Minus
2R 25286936 2R 23358238..23358347 126..17 550 100 Minus
2R 25286936 2R 23357755..23357834 490..411 400 100 Minus
Blast to na_te.dros performed on 2015-01-31 10:22:52 has no hits.

BS14962.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:26 Download gff for BS14962.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9875-PA 1..474 17..490 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:37:43 Download gff for BS14962.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9875-RA 92..575 11..495 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:46:37 Download gff for BS14962.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9875-RA 92..575 11..495 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:46:37 Download gff for BS14962.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23357751..23357834 411..495 97 -> Minus
2R 23357893..23358178 125..410 100 -> Minus
2R 23358240..23358353 11..124 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:37:43 Download gff for BS14962.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19245274..19245357 411..495 97 -> Minus
arm_2R 19245416..19245701 125..410 100 -> Minus
arm_2R 19245763..19245876 11..124 97   Minus

BS14962.complete Sequence

506 bp assembled on 2006-11-01

GenBank Submission: FJ637841

> BS14962.complete
GAAGTTATCAGTCGACATGTGTTCCATACTCGCACGTGCAAGGATGTTTT
GTGCAGGAATAGTGCAGCGTAGACTGAGCATGGGTCTCAATCCAAAACTC
GGCCTGGCGCCCAGGAAGCTCTACTCCGAGGAGAAGAAGCCCCCGGGTGT
TTTCCTTTGGGGCGGCGGACTTGGCAAGCTGCAGGGCGGTCTCAAGGAGG
AGGAGTACTTCATTTCGTTGACCCAAACCCTCGTGGGCAAGATGCGGGAC
AAGAAGGAGCCCGGCGACTACCTGCCCAACTGGGACGAGTTCCAGAAGAC
TCTGGACCACGCCTCGCTGGGCAGCACCTCTTCCATGAACAAGCACAAGA
ACGTACTCGAGGAGGCCTTTTTCCTGAACAAGACTGCAGACGACATCAAA
TTATTGCACGATCGTGCCCAAGAAGAGCTCAAATCTCGCCATACTGCCAC
AGAACTGGAACTCGAATCAGATCCCCAGAACACCAAATAGAAGCTTTCTA
GACCAT

BS14962.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:39:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG9875-RB 474 CG9875-PB 1..474 17..490 2370 100 Plus
CG9875-RA 474 CG9875-PA 1..474 17..490 2370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:40:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG9875-RB 730 CG9875-RB 96..569 17..490 2370 100 Plus
CG9875-RA 674 CG9875-RA 96..569 17..490 2370 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:39:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23357893..23358178 97..382 1430 100 Plus
2R 25286936 2R 23358238..23358347 381..490 550 100 Plus
2R 25286936 2R 23357755..23357834 17..96 400 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:39:57 has no hits.

BS14962.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:11 Download gff for BS14962.complete
Subject Subject Range Query Range Percent Splice Strand
CG9875-RA 1..474 17..490 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:06:53 Download gff for BS14962.complete
Subject Subject Range Query Range Percent Splice Strand
CG9875-RA 73..556 12..496 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:56 Download gff for BS14962.complete
Subject Subject Range Query Range Percent Splice Strand
CG9875-RA 96..563 17..484 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:11 Download gff for BS14962.complete
Subject Subject Range Query Range Percent Splice Strand
CG9875-RA 73..556 12..496 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:20 Download gff for BS14962.complete
Subject Subject Range Query Range Percent Splice Strand
CG9875-RA 96..563 17..484 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:20 Download gff for BS14962.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23358240..23358341 383..484 100   Plus
2R 23357755..23357834 17..96 100 -> Plus
2R 23357893..23358178 97..382 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:56 Download gff for BS14962.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19245278..19245357 17..96 100 -> Plus
arm_2R 19245416..19245701 97..382 100 -> Plus
arm_2R 19245763..19245864 383..484 100   Plus

BS14962.pep Sequence

Translation from 16 to 489

> BS14962.pep
MCSILARARMFCAGIVQRRLSMGLNPKLGLAPRKLYSEEKKPPGVFLWGG
GLGKLQGGLKEEEYFISLTQTLVGKMRDKKEPGDYLPNWDEFQKTLDHAS
LGSTSSMNKHKNVLEEAFFLNKTADDIKLLHDRAQEELKSRHTATELELE
SDPQNTK*

BS14962.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:29:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG9875-PB 157 CG9875-PB 1..157 1..157 821 100 Plus
CG9875-PA 157 CG9875-PA 1..157 1..157 821 100 Plus