Clone Sequence Records
BS14962.5prime Sequence
504 bp (504 high quality bases) assembled on 2006-10-13
> BS14962.5prime
GAAGTTATCAGTCGACATGTGTTCCATACTCGCACGTGCAAGGATGTTTT
GTGCAGGAATAGTGCAGCGTAGACTGAGCATGGGTCTCAATCCAAAACTC
GGCCTGGCGCCCAGGAAGCTCTACTCCGAGGAGAAGAAGCCCCCGGGTGT
TTTCCTTTGGGGCGGCGGACTTGGCAAGCTGCAGGGCGGTCTCAAGGAGG
AGGAGTACTTCATTTCGTTGACCCAAACCCTCGTGGGCAAGATGCGGGAC
AAGAAGGAGCCCGGCGACTACCTGCCCAACTGGGACGAGTTCCAGAAGAC
TCTGGACCACGCCTCGCTGGGCAGCACCTCTTCCATGAACAAGCACAAGA
ACGTACTCGAGGAGGCCTTTTTCCTGAACAAGACTGCAGACGACATCAAA
TTATTGCACGATCGTGCCCAAGAAGAGCTCAAATCTCGCCATACTGCCAC
AGAACTGGAACTCGAATCAGATCCCCAGAACACCAAATAGAAGCTTTCTA
GACC
BS14962.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:55:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9875-PA | 474 | CG9875-RA | 1..474 | 17..490 | 2370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:21:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9875-RB | 730 | CG9875-RB | 96..569 | 17..490 | 2370 | 100 | Plus |
CG9875-RA | 674 | CG9875-RA | 96..569 | 17..490 | 2370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:20:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23357893..23358178 | 97..382 | 1430 | 100 | Plus |
2R | 25286936 | 2R | 23358238..23358347 | 381..490 | 550 | 100 | Plus |
2R | 25286936 | 2R | 23357755..23357834 | 17..96 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 12:20:58 has no hits.
BS14962.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:26 Download gff for
BS14962.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9875-PA | 1..474 | 17..490 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:42:08 Download gff for
BS14962.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9875-RA | 92..575 | 12..496 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:46:39 Download gff for
BS14962.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9875-RA | 92..575 | 12..496 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:46:39 Download gff for
BS14962.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23358240..23358353 | 383..496 | 97 | | Plus |
2R | 23357751..23357834 | 12..96 | 97 | -> | Plus |
2R | 23357893..23358178 | 97..382 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:42:08 Download gff for
BS14962.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19245274..19245357 | 12..96 | 97 | -> | Plus |
arm_2R | 19245416..19245701 | 97..382 | 100 | -> | Plus |
arm_2R | 19245763..19245876 | 383..496 | 97 | | Plus |
BS14962.3prime Sequence
504 bp (504 high quality bases) assembled on 2006-10-13
> BS14962.3prime
ATGGTCTAGAAAGCTTCTATTTGGTGTTCTGGGGATCTGATTCGAGTTCC
AGTTCTGTGGCAGTATGGCGAGATTTGAGCTCTTCTTGGGCACGATCGTG
CAATAATTTGATGTCGTCTGCAGTCTTGTTCAGGAAAAAGGCCTCCTCGA
GTACGTTCTTGTGCTTGTTCATGGAAGAGGTGCTGCCCAGCGAGGCGTGG
TCCAGAGTCTTCTGGAACTCGTCCCAGTTGGGCAGGTAGTCGCCGGGCTC
CTTCTTGTCCCGCATCTTGCCCACGAGGGTTTGGGTCAACGAAATGAAGT
ACTCCTCCTCCTTGAGACCGCCCTGCAGCTTGCCAAGTCCGCCGCCCCAA
AGGAAAACACCCGGGGGCTTCTTCTCCTCGGAGTAGAGCTTCCTGGGCGC
CAGGCCGAGTTTTGGATTGAGACCCATGCTCAGTCTACGCTGCACTATTC
CTGCACAAAACATCCTTGCACGTGCGAGTATGGAACACATGTCGACTGAT
AACT
BS14962.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:55:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9875-PA | 474 | CG9875-RA | 1..474 | 490..17 | 2370 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:22:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9875-RB | 730 | CG9875-RB | 96..569 | 490..17 | 2370 | 100 | Minus |
CG9875-RA | 674 | CG9875-RA | 96..569 | 490..17 | 2370 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:22:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23357893..23358178 | 410..125 | 1430 | 100 | Minus |
2R | 25286936 | 2R | 23358238..23358347 | 126..17 | 550 | 100 | Minus |
2R | 25286936 | 2R | 23357755..23357834 | 490..411 | 400 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:22:52 has no hits.
BS14962.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:26 Download gff for
BS14962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9875-PA | 1..474 | 17..490 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:37:43 Download gff for
BS14962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9875-RA | 92..575 | 11..495 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:46:37 Download gff for
BS14962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9875-RA | 92..575 | 11..495 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:46:37 Download gff for
BS14962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23357751..23357834 | 411..495 | 97 | -> | Minus |
2R | 23357893..23358178 | 125..410 | 100 | -> | Minus |
2R | 23358240..23358353 | 11..124 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:37:43 Download gff for
BS14962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19245274..19245357 | 411..495 | 97 | -> | Minus |
arm_2R | 19245416..19245701 | 125..410 | 100 | -> | Minus |
arm_2R | 19245763..19245876 | 11..124 | 97 | | Minus |
BS14962.complete Sequence
506 bp assembled on 2006-11-01
GenBank Submission: FJ637841
> BS14962.complete
GAAGTTATCAGTCGACATGTGTTCCATACTCGCACGTGCAAGGATGTTTT
GTGCAGGAATAGTGCAGCGTAGACTGAGCATGGGTCTCAATCCAAAACTC
GGCCTGGCGCCCAGGAAGCTCTACTCCGAGGAGAAGAAGCCCCCGGGTGT
TTTCCTTTGGGGCGGCGGACTTGGCAAGCTGCAGGGCGGTCTCAAGGAGG
AGGAGTACTTCATTTCGTTGACCCAAACCCTCGTGGGCAAGATGCGGGAC
AAGAAGGAGCCCGGCGACTACCTGCCCAACTGGGACGAGTTCCAGAAGAC
TCTGGACCACGCCTCGCTGGGCAGCACCTCTTCCATGAACAAGCACAAGA
ACGTACTCGAGGAGGCCTTTTTCCTGAACAAGACTGCAGACGACATCAAA
TTATTGCACGATCGTGCCCAAGAAGAGCTCAAATCTCGCCATACTGCCAC
AGAACTGGAACTCGAATCAGATCCCCAGAACACCAAATAGAAGCTTTCTA
GACCAT
BS14962.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:39:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9875-RB | 474 | CG9875-PB | 1..474 | 17..490 | 2370 | 100 | Plus |
CG9875-RA | 474 | CG9875-PA | 1..474 | 17..490 | 2370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:40:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9875-RB | 730 | CG9875-RB | 96..569 | 17..490 | 2370 | 100 | Plus |
CG9875-RA | 674 | CG9875-RA | 96..569 | 17..490 | 2370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:39:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23357893..23358178 | 97..382 | 1430 | 100 | Plus |
2R | 25286936 | 2R | 23358238..23358347 | 381..490 | 550 | 100 | Plus |
2R | 25286936 | 2R | 23357755..23357834 | 17..96 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:39:57 has no hits.
BS14962.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:11 Download gff for
BS14962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9875-RA | 1..474 | 17..490 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:06:53 Download gff for
BS14962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9875-RA | 73..556 | 12..496 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:56 Download gff for
BS14962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9875-RA | 96..563 | 17..484 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:11 Download gff for
BS14962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9875-RA | 73..556 | 12..496 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:20 Download gff for
BS14962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9875-RA | 96..563 | 17..484 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:20 Download gff for
BS14962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23358240..23358341 | 383..484 | 100 | | Plus |
2R | 23357755..23357834 | 17..96 | 100 | -> | Plus |
2R | 23357893..23358178 | 97..382 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:56 Download gff for
BS14962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19245278..19245357 | 17..96 | 100 | -> | Plus |
arm_2R | 19245416..19245701 | 97..382 | 100 | -> | Plus |
arm_2R | 19245763..19245864 | 383..484 | 100 | | Plus |
BS14962.pep Sequence
Translation from 16 to 489
> BS14962.pep
MCSILARARMFCAGIVQRRLSMGLNPKLGLAPRKLYSEEKKPPGVFLWGG
GLGKLQGGLKEEEYFISLTQTLVGKMRDKKEPGDYLPNWDEFQKTLDHAS
LGSTSSMNKHKNVLEEAFFLNKTADDIKLLHDRAQEELKSRHTATELELE
SDPQNTK*
BS14962.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:29:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9875-PB | 157 | CG9875-PB | 1..157 | 1..157 | 821 | 100 | Plus |
CG9875-PA | 157 | CG9875-PA | 1..157 | 1..157 | 821 | 100 | Plus |