Clone Sequence Records
BS14964.3prime Sequence
813 bp (780 high quality bases) assembled on 2006-10-13
> BS14964.3prime
ATGGTCTAGAAAGCTTCTAGGCTTTTGCTAGCTCCGCTTTTTTAACGTAT
TTAAGAATCCTTACAATTGTCGATGGAGTCACTCCTTGAATTCTACTAGC
CGCCGCAATTGTCTGTGGCTGGATGAGCGTCAGCTTCTGTCGCTCCTCGT
TGGACAAGCTTAGGGACTTTGAGAAGTAATCAATGTCGGCGGGAATGGAC
AGGCGCTCCTCACGCCGTACATCCTCCACATCTCGTTGCTGTTCATCGAC
AAAGAACGAATACAGTGCCTCTATTTTCAGCCTTTCGGCCAGATTTCGCT
CGCCTTTAAGCCAGCTCAGTTCGTTGGGATGAAGATGGATTAGCTGCTCG
ATAGTGATGTTATCTGCTGGAATTCCCAGCATGTCGAAAGCCGATTTCTC
CACCGAAGCTTTGGCCTTGGGCAGATTGAGTGCTTGTCGCCAGTAATGAG
TGTGCTTCCGCAATCGCCGCAAGGACTCAATGGCCGATTGCAATCTCGCC
TCGGTTTGCTGGAAGTGCTGGTAGCGATCTGAAGATACAAGTCCAAATTC
GTAGCCCTTTTGTGTGAGACGCATGTCGGCATTGTCCGGACGAAGTGACA
ACCGAAACTCTGCCCGACTTGTAAACATGCGGTAGGGTTCATTTGTGCCT
AACGAAGTCAGGTCATCGATCAACACGCCTATGTAGCCCTCAGTTCGACT
TATGGTTAGTTGCCTTCCATCGCTATGCCTGGTTTTTCCAGCTGCATTGG
CACCAGCTATGATGCCCTGAGCGGCTGCTTCTTCATAGCCCGTAGTTCCA
TTTATCTGGCCAG
BS14964.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:35:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4610-PA | 1986 | CG4610-RA | 1190..1986 | 813..17 | 3985 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:57:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4610-RA | 2099 | CG4610-RA | 1233..2029 | 813..17 | 3985 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:57:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22493429..22494225 | 813..17 | 3985 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:57:03 has no hits.
BS14964.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:27 Download gff for
BS14964.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4610-PA | 1190..1986 | 17..813 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:19:13 Download gff for
BS14964.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4610-RA | 1233..2032 | 11..813 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:30:26 Download gff for
BS14964.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4610-RA | 1233..2032 | 11..813 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:30:26 Download gff for
BS14964.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22493429..22494228 | 11..813 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:19:13 Download gff for
BS14964.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18380934..18381733 | 11..813 | 99 | | Minus |
BS14964.5prime Sequence
713 bp (625 high quality bases) assembled on 2006-10-13
> BS14964.5prime
GAAGTTATCAGTCGACATGCAGCAGCTACGAAATGCCGTGGTGCACGGTT
GGGCTAGAAGGATAAGGGCCCCATCGAGAAGTGCCCACAGTGCCGGTGCC
GATATCTACGACGTGGTGGTCATCGGAGGCGGACATGCCGGAACAGAGGC
CTCGGCGGCAGCTGCTCGCATGGGATCACGCACCCTGCTGCTAACCCACA
AACTGGAGACTATTGGCGAGATGTCCTGCAACCCGTCGTTCGGTGGCATT
GGCAAGGGTCACCTGATGCGCGAGGTGGATGCCCTGGATGGCGTATGTGC
CCGCTGCTGCGATGTTTCCGGAGTACACTACAAGGTGCTCAATAGACGGC
GCGGTCCAGCTGTTTGGGGGCCCAGGGCGCAGATCGATCGCCAGCTGTAC
AAAAAGGCTGTGCAGCAGGAACTGCACAGCACCCCCAATCTGGAGATTCG
AGCAGCCGCTGTGGACAACCTGCTGATAGAGGATGAACAGGATACCCAAG
CCCGCCGTTGTACCGGCGTCCTTTTGGCCAACGGAGAAGTGGTACGTAGT
CGATCCGTGGTACTCACCACGGGAACATTCCTGCGGGCACACATAAACAT
CGGACTCGAGGTGCGACCGGCCGGCCGAATTGAAGACGCTCCAGCCAAAG
CGCTGGGGGAGGCGATCGACAGATTATGTTTTCGCATGGGGAGGCTGAAA
ACTGGAACTCCCG
BS14964.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:35:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4610-PA | 1986 | CG4610-RA | 1..695 | 17..711 | 3400 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:03:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4610-RA | 2099 | CG4610-RA | 44..738 | 17..711 | 3430 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:03:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22492240..22492934 | 17..711 | 3430 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:03:49 has no hits.
BS14964.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:28 Download gff for
BS14964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4610-PA | 1..696 | 17..713 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:52:43 Download gff for
BS14964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4610-RA | 44..739 | 17..713 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:35:30 Download gff for
BS14964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4610-RA | 44..739 | 17..713 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:35:30 Download gff for
BS14964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22492240..22492935 | 17..713 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:52:43 Download gff for
BS14964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18379745..18380440 | 17..713 | 99 | | Plus |
BS14964.complete Sequence
2018 bp assembled on 2010-05-13
GenBank Submission: KX803995
> BS14964.complete
GAAGTTATCAGTCGACATGCAGCAGCTACGAAATGCCGTGGTGCACGGTT
GGGCTAGAAGGATAAGGGCCCCATCGAGAAGTGCCCACAGTGCCGGTGCC
GATATCTACGACGTGGTGGTCATCGGAGGCGGACATGCCGGAACAGAGGC
CTCGGCGGCAGCTGCTCGCATGGGATCACGCACCCTGCTGCTAACCCACA
AACTGGAGACTATTGGCGAGATGTCCTGCAACCCGTCGTTCGGTGGCATT
GGCAAGGGTCACCTGATGCGCGAGGTGGATGCCCTGGATGGCGTATGTGC
CCGCTGCTGCGATGTTTCCGGAGTACACTACAAGGTGCTCAATAGACGGC
GCGGTCCAGCTGTTTGGGGGCCCAGGGCGCAGATCGATCGCCAGCTGTAC
AAAAAGGCTGTGCAGCAGGAACTGCACAGCACCCCCAATCTGGAGATTCG
AGCAGCCGCTGTGGACAACCTGCTGATAGAGGATGAACAGGATACCCAAG
CCCGCCGTTGTACCGGCGTCCTTTTGGCCAACGGAGAAGTGGTACGTAGT
CGATCCGTGGTACTCACCACGGGAACATTCCTGCGGGCACACATAAACAT
CGGACTCGAGGTGCGACCGGCCGGCCGAATTGGAGACGCTCCAGCCAAAG
CGCTGGGCGAGGCGATCGACAGATTAGGTTTTCGCATGGGGAGGCTGAAA
ACTGGAACTCCGCCTAGAATAGCAAAGGACAGTGTGGATTTCTCACAGCT
CCAAAGGCACGAAGGTGATGATCCGCCTATGCCTTTCTCCTTTCTCAACA
AAGACGTTTGGCTACCCGCCAAGGACCAACTACCCTGCTACCTTACCTAC
ACCACACCAAAAGTCAGCGACATTGTGCGCGACAATCTTCATGTAAATCG
CCATGTCACCGAGGAGATTACCGGCCCACGCTACTGCCCCTCGATTGAGT
CCAAGATCCTGAGGTTCGGCGCGAAGGTACATCAGGTGTGGTTAGAGCCA
GAAGGTCTGGACAGTTCCTTAGTGTATCCCCAAGGAATCTCCTGCACGCT
GCCCCACGATCAGCAAGTAGAGCTGGTCCATGCCATCCAAGGTCTGGAAA
AGGCGGTAGTTGTCCAGCCCGGTTATGGCGTGGAGTACGACTTCATAGAC
CCCCGTGAGTTGTATCCCACACTGGAGACGAAACGAGTGCCAGGACTCTT
CTTTGCTGGCCAGATAAATGGAACTACGGGCTATGAAGAAGCAGCCGCTC
AGGGCATCATAGCTGGTGCCAATGCAGCTGGAAAAACCAGGCATAGCGAT
GGAAGGCAACTAACCATAAGTCGAACTGAGGGCTACATAGGCGTGTTGAT
CGATGACCTGACTTCGTTAGGCACAAATGAACCCTACCGCATGTTTACAA
GTCGGGCAGAGTTTCGGTTGTCACTTCGTCCGGACAATGCCGACATGCGT
CTCACACAAAAGGGCTACGAATTTGGACTTGTATCTTCAGATCGCTACCA
GCACTTCCAGCAAACCGAGGCGAGATTGCAATCGGCCATTGAGTCCTTGC
GGCGATTGCGGAAGCACACTCATTACTGGCGACAAGCACTCAATCTGCCC
AAGGCCAAAGCTTCGGTGGAGAAATCGGCTTTCGACATGCTGGGAATTCC
AGCAGATAACATCACTATCGAGCAGCTAATCCATCTTCATCCCAACGAAC
TGAGCTGGCTTAAAGGCGAGCGAAATCTGGCCGAAAGGCTGAAAATAGAG
GCACTGTATTCGTTCTTTGTCGATGAACAGCAACGAGATGTGGAGGATGT
ACGGCGTGAGGAGCGCCTGTCCATTCCCGCCGACATTGATTACTTCTCAA
AGTCCCTAAGCTTGTCCAACGAGGAGCGACAGAAGCTGACGCTCATCCAG
CCACAGACAATTGCGGCGGCTAGTAGAATTCAAGGAGTGACTCCATCGAC
AATTGTAAGGATTCTTAAATACGTTAAAAAAGCGGAGCTAGCAAAAGCCT
AGAAGCTTTCTAGACCAT
BS14964.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:31:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4610-RA | 1986 | CG4610-PA | 1..1986 | 17..2002 | 9930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:31:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4610-RA | 2099 | CG4610-RA | 44..2029 | 17..2002 | 9930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:31:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22492240..22494225 | 17..2002 | 9930 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:31:31 has no hits.
BS14964.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-13 16:55:10 Download gff for
BS14964.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4610-RA | 27..2012 | 17..2002 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:17:07 Download gff for
BS14964.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4610-RA | 44..2029 | 17..2002 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:12:25 Download gff for
BS14964.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4610-RA | 44..2029 | 17..2002 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:12:25 Download gff for
BS14964.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22492240..22494225 | 17..2002 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:17:07 Download gff for
BS14964.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18379745..18381730 | 17..2002 | 100 | | Plus |
BS14964.pep Sequence
Translation from 16 to 2001
> BS14964.pep
MQQLRNAVVHGWARRIRAPSRSAHSAGADIYDVVVIGGGHAGTEASAAAA
RMGSRTLLLTHKLETIGEMSCNPSFGGIGKGHLMREVDALDGVCARCCDV
SGVHYKVLNRRRGPAVWGPRAQIDRQLYKKAVQQELHSTPNLEIRAAAVD
NLLIEDEQDTQARRCTGVLLANGEVVRSRSVVLTTGTFLRAHINIGLEVR
PAGRIGDAPAKALGEAIDRLGFRMGRLKTGTPPRIAKDSVDFSQLQRHEG
DDPPMPFSFLNKDVWLPAKDQLPCYLTYTTPKVSDIVRDNLHVNRHVTEE
ITGPRYCPSIESKILRFGAKVHQVWLEPEGLDSSLVYPQGISCTLPHDQQ
VELVHAIQGLEKAVVVQPGYGVEYDFIDPRELYPTLETKRVPGLFFAGQI
NGTTGYEEAAAQGIIAGANAAGKTRHSDGRQLTISRTEGYIGVLIDDLTS
LGTNEPYRMFTSRAEFRLSLRPDNADMRLTQKGYEFGLVSSDRYQHFQQT
EARLQSAIESLRRLRKHTHYWRQALNLPKAKASVEKSAFDMLGIPADNIT
IEQLIHLHPNELSWLKGERNLAERLKIEALYSFFVDEQQRDVEDVRREER
LSIPADIDYFSKSLSLSNEERQKLTLIQPQTIAAASRIQGVTPSTIVRIL
KYVKKAELAKA*
BS14964.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:33:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4610-PA | 661 | CG4610-PA | 1..661 | 1..661 | 3411 | 100 | Plus |
