Clone Sequence Records
BS14971.3prime Sequence
450 bp (450 high quality bases) assembled on 2006-10-13
> BS14971.3prime
ATGGTCTAGAAAGCTTTTACAATTTGATTGAGAAGGAGGAGCCGCAGGAG
CAGCCCTGTTCCGCCAGCGGATTGGCCACCATCCGGAAACCGGCGCGTAT
TAGTTCGCTATGGTAGTCCACGGTGGCGCCGCTGCAGTACTCCAGCGAGA
CTGTATCGATCACCACCTTGGCCTCAGCCTCGCCAAACTGTCGGTCATCC
TCGTTCAGCTGCTTATCCAAATCGAATTTGTACTGAAAGCCGGAGCATCC
GCCTCCTTCGACGGTCACACGCAGGAAAGATCCATCCACGCAGATCTCAC
GGAGCCGTTTCAAGCAGCTCTCGCTCACCTGGACACTAAGTTCGGGATTC
GCGGATGTGGAAGCGGTTGCATGCCGCATTAGGATTAGATTTCTTTGCAA
TCCGCTCCTGGCCACTTGTCGCAGTAGGAACGCCATGTCGACTGATAACT
BS14971.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:55:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13623-PA | 420 | CG13623-RA | 1..420 | 436..17 | 2100 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:40:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13623-RB | 563 | CG13623-RB | 96..516 | 436..16 | 2105 | 100 | Minus |
CG13623-RA | 725 | CG13623-RA | 258..678 | 436..16 | 2105 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:40:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24529820..24530198 | 16..394 | 1895 | 100 | Plus |
3R | 32079331 | 3R | 24530258..24530301 | 393..436 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:40:27 has no hits.
BS14971.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:33 Download gff for
BS14971.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13623-PA | 1..420 | 17..436 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:44:05 Download gff for
BS14971.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13623-RA | 258..686 | 4..436 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:28:16 Download gff for
BS14971.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13623-RA | 258..686 | 4..436 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:28:16 Download gff for
BS14971.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24529812..24530196 | 4..392 | 98 | <- | Plus |
3R | 24530258..24530301 | 393..436 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:44:05 Download gff for
BS14971.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20355534..20355918 | 4..392 | 98 | <- | Plus |
arm_3R | 20355980..20356023 | 393..436 | 100 | | Plus |
BS14971.complete Sequence
452 bp assembled on 2006-11-01
GenBank Submission: FJ637843
> BS14971.complete
GAAGTTATCAGTCGACATGGCGTTCCTACTGCGACAAGTGGCCAGGAGCG
GATTGCAAAGAAATCTAATCCTAATGCGGCATGCAACCGCTTCCACATCC
GCGAATCCCGAACTTAGTGTCCAGGTGAGCGAGAGCTGCTTGAAACGGCT
CCGTGAGATCTGCGTGGATGGATCTTTCCTGCGTGTGACCGTCGAAGGAG
GCGGATGCTCCGGCTTTCAGTACAAATTCGATTTGGATAAGCAGCTGAAC
GAGGATGACCGACAGTTTGGCGAGGCTGAGGCCAAGGTGGTGATCGATAC
AGTCTCGCTGGAGTACTGCAGCGGCGCCACCGTGGACTACCATAGCGAAC
TAATACGCGCCGGTTTCCGGATGGTGGCCAATCCGCTGGCGGAACAGGGC
TGCTCCTGCGGCTCCTCCTTCTCAATCAAATTGTAAAAGCTTTCTAGACC
AT
BS14971.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:55:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13623-RB | 420 | CG13623-PB | 1..420 | 17..436 | 2100 | 100 | Plus |
CG13623-RA | 420 | CG13623-PA | 1..420 | 17..436 | 2100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:55:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13623-RB | 563 | CG13623-RB | 96..516 | 17..437 | 2105 | 100 | Plus |
CG13623-RA | 725 | CG13623-RA | 258..678 | 17..437 | 2105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:55:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24529820..24530198 | 437..59 | 1895 | 100 | Minus |
3R | 32079331 | 3R | 24530258..24530301 | 60..17 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:55:45 has no hits.
BS14971.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:13 Download gff for
BS14971.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13623-RA | 1..420 | 17..436 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:12:21 Download gff for
BS14971.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13623-RA | 258..686 | 17..449 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:34:32 Download gff for
BS14971.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13623-RA | 258..675 | 17..434 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:13 Download gff for
BS14971.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13623-RA | 258..686 | 17..449 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:39 Download gff for
BS14971.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13623-RA | 258..675 | 17..434 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:39 Download gff for
BS14971.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24529823..24530196 | 61..434 | 100 | <- | Minus |
3R | 24530258..24530301 | 17..60 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:34:32 Download gff for
BS14971.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20355545..20355918 | 61..434 | 100 | <- | Minus |
arm_3R | 20355980..20356023 | 17..60 | 100 | | Minus |
BS14971.5prime Sequence
450 bp (450 high quality bases) assembled on 2006-10-13
> BS14971.5prime
GAAGTTATCAGTCGACATGGCGTTCCTACTGCGACAAGTGGCCAGGAGCG
GATTGCAAAGAAATCTAATCCTAATGCGGCATGCAACCGCTTCCACATCC
GCGAATCCCGAACTTAGTGTCCAGGTGAGCGAGAGCTGCTTGAAACGGCT
CCGTGAGATCTGCGTGGATGGATCTTTCCTGCGTGTGACCGTCGAAGGAG
GCGGATGCTCCGGCTTTCAGTACAAATTCGATTTGGATAAGCAGCTGAAC
GAGGATGACCGACAGTTTGGCGAGGCTGAGGCCAAGGTGGTGATCGATAC
AGTCTCGCTGGAGTACTGCAGCGGCGCCACCGTGGACTACCATAGCGAAC
TAATACGCGCCGGTTTCCGGATGGTGGCCAATCCGCTGGCGGAACAGGGC
TGCTCCTGCGGCTCCTCCTTCTCAATCAAATTGTAAAAGCTTTCTAGACC
BS14971.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:55:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13623-PA | 420 | CG13623-RA | 1..420 | 17..436 | 2100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:06:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13623-RB | 563 | CG13623-RB | 96..516 | 17..437 | 2105 | 100 | Plus |
CG13623-RA | 725 | CG13623-RA | 258..678 | 17..437 | 2105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:06:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24529820..24530198 | 437..59 | 1895 | 100 | Minus |
3R | 32079331 | 3R | 24530258..24530301 | 60..17 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:06:33 has no hits.
BS14971.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:33 Download gff for
BS14971.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13623-PA | 1..420 | 17..436 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:34:53 Download gff for
BS14971.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13623-RA | 258..686 | 17..449 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:09:29 Download gff for
BS14971.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13623-RA | 258..686 | 17..449 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:09:29 Download gff for
BS14971.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24529812..24530196 | 61..449 | 98 | <- | Minus |
3R | 24530258..24530301 | 17..60 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:34:53 Download gff for
BS14971.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20355534..20355918 | 61..449 | 98 | <- | Minus |
arm_3R | 20355980..20356023 | 17..60 | 100 | | Minus |
BS14971.pep Sequence
Translation from 16 to 435
> BS14971.pep
MAFLLRQVARSGLQRNLILMRHATASTSANPELSVQVSESCLKRLREICV
DGSFLRVTVEGGGCSGFQYKFDLDKQLNEDDRQFGEAEAKVVIDTVSLEY
CSGATVDYHSELIRAGFRMVANPLAEQGCSCGSSFSIKL*
BS14971.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:29:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13623-PB | 139 | CG13623-PB | 1..139 | 1..139 | 707 | 100 | Plus |
CG13623-PA | 139 | CG13623-PA | 1..139 | 1..139 | 707 | 100 | Plus |