Clone BS14971 Report

Search the DGRC for BS14971

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:149
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptCG13623-RA
Protein status:BS14971.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14971.3prime Sequence

450 bp (450 high quality bases) assembled on 2006-10-13

> BS14971.3prime
ATGGTCTAGAAAGCTTTTACAATTTGATTGAGAAGGAGGAGCCGCAGGAG
CAGCCCTGTTCCGCCAGCGGATTGGCCACCATCCGGAAACCGGCGCGTAT
TAGTTCGCTATGGTAGTCCACGGTGGCGCCGCTGCAGTACTCCAGCGAGA
CTGTATCGATCACCACCTTGGCCTCAGCCTCGCCAAACTGTCGGTCATCC
TCGTTCAGCTGCTTATCCAAATCGAATTTGTACTGAAAGCCGGAGCATCC
GCCTCCTTCGACGGTCACACGCAGGAAAGATCCATCCACGCAGATCTCAC
GGAGCCGTTTCAAGCAGCTCTCGCTCACCTGGACACTAAGTTCGGGATTC
GCGGATGTGGAAGCGGTTGCATGCCGCATTAGGATTAGATTTCTTTGCAA
TCCGCTCCTGGCCACTTGTCGCAGTAGGAACGCCATGTCGACTGATAACT

BS14971.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:55:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG13623-PA 420 CG13623-RA 1..420 436..17 2100 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:40:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG13623-RB 563 CG13623-RB 96..516 436..16 2105 100 Minus
CG13623-RA 725 CG13623-RA 258..678 436..16 2105 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:40:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24529820..24530198 16..394 1895 100 Plus
3R 32079331 3R 24530258..24530301 393..436 220 100 Plus
Blast to na_te.dros performed on 2015-02-06 10:40:27 has no hits.

BS14971.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:33 Download gff for BS14971.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13623-PA 1..420 17..436 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:44:05 Download gff for BS14971.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13623-RA 258..686 4..436 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:28:16 Download gff for BS14971.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13623-RA 258..686 4..436 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:28:16 Download gff for BS14971.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24529812..24530196 4..392 98 <- Plus
3R 24530258..24530301 393..436 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:44:05 Download gff for BS14971.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20355534..20355918 4..392 98 <- Plus
arm_3R 20355980..20356023 393..436 100   Plus

BS14971.complete Sequence

452 bp assembled on 2006-11-01

GenBank Submission: FJ637843

> BS14971.complete
GAAGTTATCAGTCGACATGGCGTTCCTACTGCGACAAGTGGCCAGGAGCG
GATTGCAAAGAAATCTAATCCTAATGCGGCATGCAACCGCTTCCACATCC
GCGAATCCCGAACTTAGTGTCCAGGTGAGCGAGAGCTGCTTGAAACGGCT
CCGTGAGATCTGCGTGGATGGATCTTTCCTGCGTGTGACCGTCGAAGGAG
GCGGATGCTCCGGCTTTCAGTACAAATTCGATTTGGATAAGCAGCTGAAC
GAGGATGACCGACAGTTTGGCGAGGCTGAGGCCAAGGTGGTGATCGATAC
AGTCTCGCTGGAGTACTGCAGCGGCGCCACCGTGGACTACCATAGCGAAC
TAATACGCGCCGGTTTCCGGATGGTGGCCAATCCGCTGGCGGAACAGGGC
TGCTCCTGCGGCTCCTCCTTCTCAATCAAATTGTAAAAGCTTTCTAGACC
AT

BS14971.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:55:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG13623-RB 420 CG13623-PB 1..420 17..436 2100 100 Plus
CG13623-RA 420 CG13623-PA 1..420 17..436 2100 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:55:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG13623-RB 563 CG13623-RB 96..516 17..437 2105 100 Plus
CG13623-RA 725 CG13623-RA 258..678 17..437 2105 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:55:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24529820..24530198 437..59 1895 100 Minus
3R 32079331 3R 24530258..24530301 60..17 220 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:55:45 has no hits.

BS14971.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:13 Download gff for BS14971.complete
Subject Subject Range Query Range Percent Splice Strand
CG13623-RA 1..420 17..436 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:12:21 Download gff for BS14971.complete
Subject Subject Range Query Range Percent Splice Strand
CG13623-RA 258..686 17..449 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:34:32 Download gff for BS14971.complete
Subject Subject Range Query Range Percent Splice Strand
CG13623-RA 258..675 17..434 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:13 Download gff for BS14971.complete
Subject Subject Range Query Range Percent Splice Strand
CG13623-RA 258..686 17..449 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:39 Download gff for BS14971.complete
Subject Subject Range Query Range Percent Splice Strand
CG13623-RA 258..675 17..434 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:39 Download gff for BS14971.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24529823..24530196 61..434 100 <- Minus
3R 24530258..24530301 17..60 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:34:32 Download gff for BS14971.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20355545..20355918 61..434 100 <- Minus
arm_3R 20355980..20356023 17..60 100   Minus

BS14971.5prime Sequence

450 bp (450 high quality bases) assembled on 2006-10-13

> BS14971.5prime
GAAGTTATCAGTCGACATGGCGTTCCTACTGCGACAAGTGGCCAGGAGCG
GATTGCAAAGAAATCTAATCCTAATGCGGCATGCAACCGCTTCCACATCC
GCGAATCCCGAACTTAGTGTCCAGGTGAGCGAGAGCTGCTTGAAACGGCT
CCGTGAGATCTGCGTGGATGGATCTTTCCTGCGTGTGACCGTCGAAGGAG
GCGGATGCTCCGGCTTTCAGTACAAATTCGATTTGGATAAGCAGCTGAAC
GAGGATGACCGACAGTTTGGCGAGGCTGAGGCCAAGGTGGTGATCGATAC
AGTCTCGCTGGAGTACTGCAGCGGCGCCACCGTGGACTACCATAGCGAAC
TAATACGCGCCGGTTTCCGGATGGTGGCCAATCCGCTGGCGGAACAGGGC
TGCTCCTGCGGCTCCTCCTTCTCAATCAAATTGTAAAAGCTTTCTAGACC

BS14971.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:55:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG13623-PA 420 CG13623-RA 1..420 17..436 2100 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:06:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG13623-RB 563 CG13623-RB 96..516 17..437 2105 100 Plus
CG13623-RA 725 CG13623-RA 258..678 17..437 2105 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:06:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24529820..24530198 437..59 1895 100 Minus
3R 32079331 3R 24530258..24530301 60..17 220 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:06:33 has no hits.

BS14971.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:33 Download gff for BS14971.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13623-PA 1..420 17..436 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:34:53 Download gff for BS14971.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13623-RA 258..686 17..449 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:09:29 Download gff for BS14971.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13623-RA 258..686 17..449 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:09:29 Download gff for BS14971.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24529812..24530196 61..449 98 <- Minus
3R 24530258..24530301 17..60 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:34:53 Download gff for BS14971.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20355534..20355918 61..449 98 <- Minus
arm_3R 20355980..20356023 17..60 100   Minus

BS14971.pep Sequence

Translation from 16 to 435

> BS14971.pep
MAFLLRQVARSGLQRNLILMRHATASTSANPELSVQVSESCLKRLREICV
DGSFLRVTVEGGGCSGFQYKFDLDKQLNEDDRQFGEAEAKVVIDTVSLEY
CSGATVDYHSELIRAGFRMVANPLAEQGCSCGSSFSIKL*

BS14971.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:29:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG13623-PB 139 CG13623-PB 1..139 1..139 707 100 Plus
CG13623-PA 139 CG13623-PA 1..139 1..139 707 100 Plus