Clone BS14973 Report

Search the DGRC for BS14973

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:149
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptCG3290-RA
Protein status:BS14973.pep: full length peptide match
Sequenced Size:1649

Clone Sequence Records

BS14973.3prime Sequence

826 bp (730 high quality bases) assembled on 2006-10-13

> BS14973.3prime
ATGGTCTAGAAAGCTTTCAGGTTTTCCGCCCTGAGCTCCCGCAGACCTGC
TTTCCACTACCAACGCATGAGGCGTAGGCCATCAGGTGGGGAATGGTGCT
CTGCTGCATCACTCCGGTGAAAAGGTGACTCTGCGGGCCAGAAGCCCAAA
TACCCACGTCCTCCCCGGAGTGCACTCCAATTTCTTTATCGATGTAGCTT
GGTGATATGGCGTCATCGGGGCCAAGGATATCATCCAAAGGAATGCGCTG
GCCATGCTCATCCAGATACTGATTGGGTCCAGCTGCGTAGTTTAGCACCG
AGTATTTCACTCCGTTGATATCTGTGTCGTGTTGATTGAGTCCAAGGATA
GGTGTACCCCTTCCAGGATATCCGGCTATGCTGACGGCATGTCCGTGATC
AGCGGTCACCACAATCAACGTGTCACTGATGTTGGTCATTTCACGAGCCA
ACTGAATGGCCTTCTCGAACTCCAGGGCCTCATCCAAGGCGTATCCCGCC
TGCGTGTAGTGGTTGCCGTAGTCAATGAGGCCACCCTCTATGAACACAAA
GTATCCATTTTCATTGTGGCTGAGCTTCTTGATGGCCACCTCGGTGAGTT
CCGAGAGAGTGGGCTGATAGGTGGGATCAGCGTCCATGTGAAAGTCCATC
AAGCCCGATTGGAAGGTACCAATTATGCTGGATGCAGCTGAAACGTCTAA
GTTAAGCAGCTGCTTGCGATTGGTGACCAAGACACCTTTATCGTGGAGCC
CTTGCCACCGGGACAGCAGATTCACGCCATCGGATCGCTCGCCATATTTC
CCGTGACTATCCTTCGTGGTTTTGGG

BS14973.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:36:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG3290-PA 1617 CG3290-RA 808..1617 826..17 4050 100 Minus
CG3264-PA 1602 CG3264-RA 1219..1413 415..221 475 89.7 Minus
CG3264-PA 1602 CG3264-RA 1501..1556 133..78 230 96.4 Minus
CG3292-PA 1632 CG3292-RA 1537..1589 121..69 215 96.2 Minus
CG3264-PA 1602 CG3264-RA 841..929 790..702 195 88.7 Minus
CG3264-PA 1602 CG3264-RA 1148..1199 486..435 185 94.2 Minus
CG3292-PA 1632 CG3292-RA 1382..1415 276..243 145 97 Minus
CG3264-PA 1602 CG3264-RA 1008..1064 623..567 135 89.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:54:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG3290-RA 1762 CG3290-RA 826..1638 826..14 4065 100 Minus
CG3264-RB 2182 CG3264-RB 879..1636 794..40 1830 83.3 Minus
CG3264-RA 1737 CG3264-RA 879..1636 794..40 1830 83.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:54:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22206129..22206650 14..535 2610 100 Plus
2R 25286936 2R 22206717..22207010 533..826 1470 100 Plus
2R 25286936 2R 22209010..22209505 40..535 1310 84.3 Plus
2R 25286936 2R 22209559..22209825 531..794 520 80.5 Plus
2R 25286936 2R 22203759..22203851 53..145 300 88.2 Plus
2R 25286936 2R 22204014..22204188 243..417 215 74.9 Plus
Blast to na_te.dros performed on 2015-02-11 15:54:38 has no hits.

BS14973.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:39 Download gff for BS14973.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3290-PA 808..1617 17..826 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:23:32 Download gff for BS14973.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3290-RA 826..1638 14..826 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:24:11 Download gff for BS14973.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3290-RA 826..1638 14..826 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:24:11 Download gff for BS14973.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22206129..22206649 14..534 100 <- Plus
2R 22206719..22207010 535..826 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:23:32 Download gff for BS14973.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18093634..18094154 14..534 100 <- Plus
arm_2R 18094224..18094515 535..826 100   Plus

BS14973.5prime Sequence

766 bp (751 high quality bases) assembled on 2006-10-13

> BS14973.5prime
GAAGTTATCAGTCGACATGCACATCTCCCAGAGGCGCTGCCTTTATCCGA
TCTTTCTATTCCTGCTGGCCTTTGTTGGCACAGCACTCGGTAGAGTCCAG
GAAGTGCACAATGTGTTGGAGTTGACGGGTCAGAAAGCCAGCAAGCTGAG
GTTCTCCACGGACGTGGCCACGGGCAAGTACACTCCGCCGGAGGAGATGG
ATCCCCAGTTCTGGTACAAGCTCGCCGACGAGGAGATCGCCAAAAGGCTT
CAGCTACCACAGCCCAACTCCGACAGGGCCAAAAACGTGATAATGTTCCT
CGGGGATGGTATGCCAATTAGCACAGTCACAGCTGCTCGCATCCTGAAAG
GACAACGCCAAGGAAACACTGGGGAGGAGTCCTCACTGAGCTTCGAGAAA
TTCCCCTATTCGGGATTGAGCAGAACCTACTGCGCCAACGCCCAGGTTCC
CGACTCAGCCTGTACTGCTACCGCTTATCTGTGCGGCGTTAAAACCAACA
TTATTAATATCGGAGTAAGTGCAGCAGTAAACTTTAACAACTGCACCGCC
AGCCAGGATCCCGCGAACCGCCTGACCTCCATTGCGGAATGGGCCCAGAA
TGCCGGCAAGTCCACGGGATTTGTGACCACCACCACACTGACCCATGCCA
GTCCCTCTGGAGCATATGCCAAGACGGCCAATCGAATGTGGCAAAGCGAC
ACGGATGTGACCAGCTATGGAGTGGATGCCAGCACCTGCGTCGACATGGC
CACTTCACTGGTGACC

BS14973.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:37:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG3290-PA 1617 CG3290-RA 1..750 17..766 3700 99.7 Plus
CG3264-PA 1602 CG3264-RA 520..712 539..731 490 90.1 Plus
CG3264-PA 1602 CG3264-RA 311..482 330..501 310 87.2 Plus
CG3264-PA 1602 CG3264-RA 157..248 176..267 235 90.2 Plus
CG3292-PA 1632 CG3292-RA 620..674 621..675 150 90.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:34:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG3290-RA 1762 CG3290-RA 19..768 17..766 3720 99.7 Plus
CG3264-RB 2182 CG3264-RB 83..776 60..753 1820 84.1 Plus
CG3264-RA 1737 CG3264-RA 83..776 60..753 1820 84.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:34:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22207562..22207969 424..17 2040 100 Minus
2R 25286936 2R 22207068..22207409 766..425 1680 99.4 Minus
2R 25286936 2R 22209928..22210256 753..425 985 86.6 Minus
2R 25286936 2R 22210320..22210683 423..60 845 82.1 Minus
2R 25286936 2R 22204724..22205002 706..428 435 77.1 Minus
Blast to na_te.dros performed on 2015-02-13 01:34:55 has no hits.

BS14973.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:39 Download gff for BS14973.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3290-PA 1..750 17..766 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:12:35 Download gff for BS14973.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3290-RA 14..768 11..766 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:14:59 Download gff for BS14973.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3290-RA 14..768 11..766 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:14:59 Download gff for BS14973.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22207068..22207409 425..766 99 <- Minus
2R 22207562..22207974 11..424 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:12:35 Download gff for BS14973.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18094573..18094914 425..766 99 <- Minus
arm_2R 18095067..18095479 11..424 99   Minus

BS14973.complete Sequence

1649 bp assembled on 2009-08-26

GenBank Submission: KX804060

> BS14973.complete
GAAGTTATCAGTCGACATGCACATCTCCCAGAGGCGCTGCCTTTATCCGA
TCTTTCTATTCCTGCTGGCCTTTGTTGGCACAGCACTCGGTAGAGTCCAG
GAAGTGCACAATGTGTTGGAGTTGACGGGTCAGAAAGCCAGCAAGCTGAG
GTTCTCCACGGACGTGGCCACGGGCAAGTACACTCCGCCGGAGGAGATGG
ATCCCCAGTTCTGGTACAAGCTCGCCGACGAGGAGATCGCCAAAAGGCTT
CAGCTACCACAGCCCAACTCCGACAGGGCCAAAAACGTGATAATGTTCCT
CGGGGATGGTATGCCAATTAGCACAGTCACAGCTGCTCGCATCCTGAAAG
GACAACGCCAAGGAAACACTGGGGAGGAGTCCTCACTGAGCTTCGAGAAA
TTCCCCTATTCGGGATTGAGCAGAACCTACTGCGCCAACGCCCAGGTTCC
CGACTCAGCCTGTACTGCTACCGCTTATCTGTGCGGCGTTAAAACCAACA
TTATTAATATCGGAGTAAGTGCAGCAGTAAACTTTAACAACTGCACCGCC
AGCCAGGATCCCGCGAACCGCCTGACCTCCATTGCGGAATGGGCCCAGAA
TGCCGGCAAGTCCACGGGATTTGTGACCACCACCACACTGACCCATGCCA
GTCCCTCTGGAGCATATGCCAAGACGGCCAATCGAATGTGGCAAAGCGAC
ACGGATGTGACCAGCTATGGAGTGGATGCCAGCACCTGCGTCGACATGGC
CACTCAACTGGTGACCCAGACGCCCGGCAAGAACTTCGAGGTCATGTTCG
GCGGCGGAATGGGCAAGTTCCTTCCCAAAACCACGAAGGATAGTCACGGG
AAATATGGCGAGCGATCCGATGGCGTGAATCTGCTGTCCCGGTGGCAAGG
GCTCCACGATAAAGGTGTCTTGGTCACCAATCGCAAGCAGCTGCTTAACT
TAGACGTTTCAGCTGCATCCAGCATAATTGGTACCTTCCAATCGGGCTTG
ATGGACTTTCACATGGACGCTGATCCCACCTATCAGCCCACTCTCTCGGA
ACTCACCGAGGTGGCCATCAAGAAGCTCAGCCACAATGAAAATGGATACT
TTGTGTTCATAGAGGGTGGCCTCATTGACTACGGCAACCACTACACGCAG
GCGGGATACGCCTTGGATGAGGCCCTGGAGTTCGAGAAGGCCATTCAGTT
GGCTCGTGAAATGACCAACATCAGTGACACGTTGATTGTGGTGACCGCTG
ATCACGGACATGCCGTCAGCATAGCCGGATATCCTGGAAGGGGTACACCT
ATCCTTGGACTCAATCAACACGACACAGATATCAACGGAGTGAAATACTC
GGTGCTAAACTACGCAGCTGGACCCAATCAGTATCTGGATGAGCATGGCC
AGCGCATTCCTTTGGATGATATCCTTGGCCCCGATGACGCCATATCACCA
AGCTACATCGATAAAGAAATTGGAGTGCACTCCGGGGAGGACGTGGGTAT
TTGGGCTTCTGGCCCGCAGAGTCACCTTTTCACCGGAGTGATGCAGCAGA
GCACCATTCCCCACCTGATGGCCTACGCCTCATGCGTTGGTAGTGGAAAG
CAGGTCTGCGGGAGCTCAGGGCGGAAAACCTGAAAGCTTTCTAGACCAT

BS14973.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:34:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG3290-RA 1617 CG3290-PA 1..1617 17..1633 8085 100 Plus
CG3264-RB 1602 CG3264-PB 41..1594 60..1610 3865 83.4 Plus
CG3264-RA 1602 CG3264-PA 41..1594 60..1610 3865 83.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG3290-RA 1762 CG3290-RA 19..1638 17..1636 8100 100 Plus
CG3264-RB 2182 CG3264-RB 83..1636 60..1610 3865 83.4 Plus
CG3264-RA 1737 CG3264-RA 83..1636 60..1610 3865 83.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22206717..22207409 1117..425 3465 100 Minus
2R 25286936 2R 22206129..22206650 1636..1115 2610 100 Minus
2R 25286936 2R 22207562..22207969 424..17 2040 100 Minus
2R 25286936 2R 22209559..22210256 1119..425 1745 83.7 Minus
2R 25286936 2R 22209010..22209505 1610..1115 1310 84.3 Minus
2R 25286936 2R 22210320..22210683 423..60 845 82.1 Minus
2R 25286936 2R 22204593..22205002 828..428 500 75.4 Minus
2R 25286936 2R 22203759..22203851 1597..1505 300 88.2 Minus
2R 25286936 2R 22204014..22204188 1407..1233 215 74.9 Minus
Blast to na_te.dros performed on 2014-11-28 01:34:42 has no hits.

BS14973.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:22 Download gff for BS14973.complete
Subject Subject Range Query Range Percent Splice Strand
CG3290-RA 19..1634 17..1632 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:51:35 Download gff for BS14973.complete
Subject Subject Range Query Range Percent Splice Strand
CG3290-RA 19..1634 17..1632 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:54 Download gff for BS14973.complete
Subject Subject Range Query Range Percent Splice Strand
CG3290-RA 19..1634 17..1632 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:54 Download gff for BS14973.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22207562..22207969 17..424 100   Minus
2R 22206133..22206649 1116..1632 100 <- Minus
2R 22206719..22207409 425..1115 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:51:35 Download gff for BS14973.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18093638..18094154 1116..1632 100 <- Minus
arm_2R 18094224..18094914 425..1115 100 <- Minus
arm_2R 18095067..18095474 17..424 100   Minus

BS14973.pep Sequence

Translation from 16 to 1632

> BS14973.pep
MHISQRRCLYPIFLFLLAFVGTALGRVQEVHNVLELTGQKASKLRFSTDV
ATGKYTPPEEMDPQFWYKLADEEIAKRLQLPQPNSDRAKNVIMFLGDGMP
ISTVTAARILKGQRQGNTGEESSLSFEKFPYSGLSRTYCANAQVPDSACT
ATAYLCGVKTNIINIGVSAAVNFNNCTASQDPANRLTSIAEWAQNAGKST
GFVTTTTLTHASPSGAYAKTANRMWQSDTDVTSYGVDASTCVDMATQLVT
QTPGKNFEVMFGGGMGKFLPKTTKDSHGKYGERSDGVNLLSRWQGLHDKG
VLVTNRKQLLNLDVSAASSIIGTFQSGLMDFHMDADPTYQPTLSELTEVA
IKKLSHNENGYFVFIEGGLIDYGNHYTQAGYALDEALEFEKAIQLAREMT
NISDTLIVVTADHGHAVSIAGYPGRGTPILGLNQHDTDINGVKYSVLNYA
AGPNQYLDEHGQRIPLDDILGPDDAISPSYIDKEIGVHSGEDVGIWASGP
QSHLFTGVMQQSTIPHLMAYASCVGSGKQVCGSSGRKT*

BS14973.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:32:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG3290-PA 538 CG3290-PA 1..538 1..538 2817 100 Plus
CG3264-PB 533 CG3264-PB 1..531 1..531 2396 85.9 Plus
CG3264-PA 533 CG3264-PA 1..531 1..531 2396 85.9 Plus
CG3292-PA 543 CG3292-PA 7..539 12..531 1781 64 Plus
CG5656-PA 523 CG5656-PA 22..513 54..531 1101 47 Plus