Clone Sequence Records
BS14973.3prime Sequence
826 bp (730 high quality bases) assembled on 2006-10-13
> BS14973.3prime
ATGGTCTAGAAAGCTTTCAGGTTTTCCGCCCTGAGCTCCCGCAGACCTGC
TTTCCACTACCAACGCATGAGGCGTAGGCCATCAGGTGGGGAATGGTGCT
CTGCTGCATCACTCCGGTGAAAAGGTGACTCTGCGGGCCAGAAGCCCAAA
TACCCACGTCCTCCCCGGAGTGCACTCCAATTTCTTTATCGATGTAGCTT
GGTGATATGGCGTCATCGGGGCCAAGGATATCATCCAAAGGAATGCGCTG
GCCATGCTCATCCAGATACTGATTGGGTCCAGCTGCGTAGTTTAGCACCG
AGTATTTCACTCCGTTGATATCTGTGTCGTGTTGATTGAGTCCAAGGATA
GGTGTACCCCTTCCAGGATATCCGGCTATGCTGACGGCATGTCCGTGATC
AGCGGTCACCACAATCAACGTGTCACTGATGTTGGTCATTTCACGAGCCA
ACTGAATGGCCTTCTCGAACTCCAGGGCCTCATCCAAGGCGTATCCCGCC
TGCGTGTAGTGGTTGCCGTAGTCAATGAGGCCACCCTCTATGAACACAAA
GTATCCATTTTCATTGTGGCTGAGCTTCTTGATGGCCACCTCGGTGAGTT
CCGAGAGAGTGGGCTGATAGGTGGGATCAGCGTCCATGTGAAAGTCCATC
AAGCCCGATTGGAAGGTACCAATTATGCTGGATGCAGCTGAAACGTCTAA
GTTAAGCAGCTGCTTGCGATTGGTGACCAAGACACCTTTATCGTGGAGCC
CTTGCCACCGGGACAGCAGATTCACGCCATCGGATCGCTCGCCATATTTC
CCGTGACTATCCTTCGTGGTTTTGGG
BS14973.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:36:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3290-PA | 1617 | CG3290-RA | 808..1617 | 826..17 | 4050 | 100 | Minus |
CG3264-PA | 1602 | CG3264-RA | 1219..1413 | 415..221 | 475 | 89.7 | Minus |
CG3264-PA | 1602 | CG3264-RA | 1501..1556 | 133..78 | 230 | 96.4 | Minus |
CG3292-PA | 1632 | CG3292-RA | 1537..1589 | 121..69 | 215 | 96.2 | Minus |
CG3264-PA | 1602 | CG3264-RA | 841..929 | 790..702 | 195 | 88.7 | Minus |
CG3264-PA | 1602 | CG3264-RA | 1148..1199 | 486..435 | 185 | 94.2 | Minus |
CG3292-PA | 1632 | CG3292-RA | 1382..1415 | 276..243 | 145 | 97 | Minus |
CG3264-PA | 1602 | CG3264-RA | 1008..1064 | 623..567 | 135 | 89.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:54:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3290-RA | 1762 | CG3290-RA | 826..1638 | 826..14 | 4065 | 100 | Minus |
CG3264-RB | 2182 | CG3264-RB | 879..1636 | 794..40 | 1830 | 83.3 | Minus |
CG3264-RA | 1737 | CG3264-RA | 879..1636 | 794..40 | 1830 | 83.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:54:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22206129..22206650 | 14..535 | 2610 | 100 | Plus |
2R | 25286936 | 2R | 22206717..22207010 | 533..826 | 1470 | 100 | Plus |
2R | 25286936 | 2R | 22209010..22209505 | 40..535 | 1310 | 84.3 | Plus |
2R | 25286936 | 2R | 22209559..22209825 | 531..794 | 520 | 80.5 | Plus |
2R | 25286936 | 2R | 22203759..22203851 | 53..145 | 300 | 88.2 | Plus |
2R | 25286936 | 2R | 22204014..22204188 | 243..417 | 215 | 74.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:54:38 has no hits.
BS14973.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:39 Download gff for
BS14973.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3290-PA | 808..1617 | 17..826 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:23:32 Download gff for
BS14973.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3290-RA | 826..1638 | 14..826 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:24:11 Download gff for
BS14973.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3290-RA | 826..1638 | 14..826 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:24:11 Download gff for
BS14973.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22206129..22206649 | 14..534 | 100 | <- | Plus |
2R | 22206719..22207010 | 535..826 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:23:32 Download gff for
BS14973.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18093634..18094154 | 14..534 | 100 | <- | Plus |
arm_2R | 18094224..18094515 | 535..826 | 100 | | Plus |
BS14973.5prime Sequence
766 bp (751 high quality bases) assembled on 2006-10-13
> BS14973.5prime
GAAGTTATCAGTCGACATGCACATCTCCCAGAGGCGCTGCCTTTATCCGA
TCTTTCTATTCCTGCTGGCCTTTGTTGGCACAGCACTCGGTAGAGTCCAG
GAAGTGCACAATGTGTTGGAGTTGACGGGTCAGAAAGCCAGCAAGCTGAG
GTTCTCCACGGACGTGGCCACGGGCAAGTACACTCCGCCGGAGGAGATGG
ATCCCCAGTTCTGGTACAAGCTCGCCGACGAGGAGATCGCCAAAAGGCTT
CAGCTACCACAGCCCAACTCCGACAGGGCCAAAAACGTGATAATGTTCCT
CGGGGATGGTATGCCAATTAGCACAGTCACAGCTGCTCGCATCCTGAAAG
GACAACGCCAAGGAAACACTGGGGAGGAGTCCTCACTGAGCTTCGAGAAA
TTCCCCTATTCGGGATTGAGCAGAACCTACTGCGCCAACGCCCAGGTTCC
CGACTCAGCCTGTACTGCTACCGCTTATCTGTGCGGCGTTAAAACCAACA
TTATTAATATCGGAGTAAGTGCAGCAGTAAACTTTAACAACTGCACCGCC
AGCCAGGATCCCGCGAACCGCCTGACCTCCATTGCGGAATGGGCCCAGAA
TGCCGGCAAGTCCACGGGATTTGTGACCACCACCACACTGACCCATGCCA
GTCCCTCTGGAGCATATGCCAAGACGGCCAATCGAATGTGGCAAAGCGAC
ACGGATGTGACCAGCTATGGAGTGGATGCCAGCACCTGCGTCGACATGGC
CACTTCACTGGTGACC
BS14973.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:37:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3290-PA | 1617 | CG3290-RA | 1..750 | 17..766 | 3700 | 99.7 | Plus |
CG3264-PA | 1602 | CG3264-RA | 520..712 | 539..731 | 490 | 90.1 | Plus |
CG3264-PA | 1602 | CG3264-RA | 311..482 | 330..501 | 310 | 87.2 | Plus |
CG3264-PA | 1602 | CG3264-RA | 157..248 | 176..267 | 235 | 90.2 | Plus |
CG3292-PA | 1632 | CG3292-RA | 620..674 | 621..675 | 150 | 90.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:34:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3290-RA | 1762 | CG3290-RA | 19..768 | 17..766 | 3720 | 99.7 | Plus |
CG3264-RB | 2182 | CG3264-RB | 83..776 | 60..753 | 1820 | 84.1 | Plus |
CG3264-RA | 1737 | CG3264-RA | 83..776 | 60..753 | 1820 | 84.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:34:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22207562..22207969 | 424..17 | 2040 | 100 | Minus |
2R | 25286936 | 2R | 22207068..22207409 | 766..425 | 1680 | 99.4 | Minus |
2R | 25286936 | 2R | 22209928..22210256 | 753..425 | 985 | 86.6 | Minus |
2R | 25286936 | 2R | 22210320..22210683 | 423..60 | 845 | 82.1 | Minus |
2R | 25286936 | 2R | 22204724..22205002 | 706..428 | 435 | 77.1 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:34:55 has no hits.
BS14973.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:39 Download gff for
BS14973.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3290-PA | 1..750 | 17..766 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:12:35 Download gff for
BS14973.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3290-RA | 14..768 | 11..766 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:14:59 Download gff for
BS14973.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3290-RA | 14..768 | 11..766 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:14:59 Download gff for
BS14973.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22207068..22207409 | 425..766 | 99 | <- | Minus |
2R | 22207562..22207974 | 11..424 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:12:35 Download gff for
BS14973.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18094573..18094914 | 425..766 | 99 | <- | Minus |
arm_2R | 18095067..18095479 | 11..424 | 99 | | Minus |
BS14973.complete Sequence
1649 bp assembled on 2009-08-26
GenBank Submission: KX804060
> BS14973.complete
GAAGTTATCAGTCGACATGCACATCTCCCAGAGGCGCTGCCTTTATCCGA
TCTTTCTATTCCTGCTGGCCTTTGTTGGCACAGCACTCGGTAGAGTCCAG
GAAGTGCACAATGTGTTGGAGTTGACGGGTCAGAAAGCCAGCAAGCTGAG
GTTCTCCACGGACGTGGCCACGGGCAAGTACACTCCGCCGGAGGAGATGG
ATCCCCAGTTCTGGTACAAGCTCGCCGACGAGGAGATCGCCAAAAGGCTT
CAGCTACCACAGCCCAACTCCGACAGGGCCAAAAACGTGATAATGTTCCT
CGGGGATGGTATGCCAATTAGCACAGTCACAGCTGCTCGCATCCTGAAAG
GACAACGCCAAGGAAACACTGGGGAGGAGTCCTCACTGAGCTTCGAGAAA
TTCCCCTATTCGGGATTGAGCAGAACCTACTGCGCCAACGCCCAGGTTCC
CGACTCAGCCTGTACTGCTACCGCTTATCTGTGCGGCGTTAAAACCAACA
TTATTAATATCGGAGTAAGTGCAGCAGTAAACTTTAACAACTGCACCGCC
AGCCAGGATCCCGCGAACCGCCTGACCTCCATTGCGGAATGGGCCCAGAA
TGCCGGCAAGTCCACGGGATTTGTGACCACCACCACACTGACCCATGCCA
GTCCCTCTGGAGCATATGCCAAGACGGCCAATCGAATGTGGCAAAGCGAC
ACGGATGTGACCAGCTATGGAGTGGATGCCAGCACCTGCGTCGACATGGC
CACTCAACTGGTGACCCAGACGCCCGGCAAGAACTTCGAGGTCATGTTCG
GCGGCGGAATGGGCAAGTTCCTTCCCAAAACCACGAAGGATAGTCACGGG
AAATATGGCGAGCGATCCGATGGCGTGAATCTGCTGTCCCGGTGGCAAGG
GCTCCACGATAAAGGTGTCTTGGTCACCAATCGCAAGCAGCTGCTTAACT
TAGACGTTTCAGCTGCATCCAGCATAATTGGTACCTTCCAATCGGGCTTG
ATGGACTTTCACATGGACGCTGATCCCACCTATCAGCCCACTCTCTCGGA
ACTCACCGAGGTGGCCATCAAGAAGCTCAGCCACAATGAAAATGGATACT
TTGTGTTCATAGAGGGTGGCCTCATTGACTACGGCAACCACTACACGCAG
GCGGGATACGCCTTGGATGAGGCCCTGGAGTTCGAGAAGGCCATTCAGTT
GGCTCGTGAAATGACCAACATCAGTGACACGTTGATTGTGGTGACCGCTG
ATCACGGACATGCCGTCAGCATAGCCGGATATCCTGGAAGGGGTACACCT
ATCCTTGGACTCAATCAACACGACACAGATATCAACGGAGTGAAATACTC
GGTGCTAAACTACGCAGCTGGACCCAATCAGTATCTGGATGAGCATGGCC
AGCGCATTCCTTTGGATGATATCCTTGGCCCCGATGACGCCATATCACCA
AGCTACATCGATAAAGAAATTGGAGTGCACTCCGGGGAGGACGTGGGTAT
TTGGGCTTCTGGCCCGCAGAGTCACCTTTTCACCGGAGTGATGCAGCAGA
GCACCATTCCCCACCTGATGGCCTACGCCTCATGCGTTGGTAGTGGAAAG
CAGGTCTGCGGGAGCTCAGGGCGGAAAACCTGAAAGCTTTCTAGACCAT
BS14973.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:34:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3290-RA | 1617 | CG3290-PA | 1..1617 | 17..1633 | 8085 | 100 | Plus |
CG3264-RB | 1602 | CG3264-PB | 41..1594 | 60..1610 | 3865 | 83.4 | Plus |
CG3264-RA | 1602 | CG3264-PA | 41..1594 | 60..1610 | 3865 | 83.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3290-RA | 1762 | CG3290-RA | 19..1638 | 17..1636 | 8100 | 100 | Plus |
CG3264-RB | 2182 | CG3264-RB | 83..1636 | 60..1610 | 3865 | 83.4 | Plus |
CG3264-RA | 1737 | CG3264-RA | 83..1636 | 60..1610 | 3865 | 83.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22206717..22207409 | 1117..425 | 3465 | 100 | Minus |
2R | 25286936 | 2R | 22206129..22206650 | 1636..1115 | 2610 | 100 | Minus |
2R | 25286936 | 2R | 22207562..22207969 | 424..17 | 2040 | 100 | Minus |
2R | 25286936 | 2R | 22209559..22210256 | 1119..425 | 1745 | 83.7 | Minus |
2R | 25286936 | 2R | 22209010..22209505 | 1610..1115 | 1310 | 84.3 | Minus |
2R | 25286936 | 2R | 22210320..22210683 | 423..60 | 845 | 82.1 | Minus |
2R | 25286936 | 2R | 22204593..22205002 | 828..428 | 500 | 75.4 | Minus |
2R | 25286936 | 2R | 22203759..22203851 | 1597..1505 | 300 | 88.2 | Minus |
2R | 25286936 | 2R | 22204014..22204188 | 1407..1233 | 215 | 74.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:34:42 has no hits.
BS14973.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:22 Download gff for
BS14973.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3290-RA | 19..1634 | 17..1632 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:51:35 Download gff for
BS14973.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3290-RA | 19..1634 | 17..1632 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:54 Download gff for
BS14973.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3290-RA | 19..1634 | 17..1632 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:54 Download gff for
BS14973.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22207562..22207969 | 17..424 | 100 | | Minus |
2R | 22206133..22206649 | 1116..1632 | 100 | <- | Minus |
2R | 22206719..22207409 | 425..1115 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:51:35 Download gff for
BS14973.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18093638..18094154 | 1116..1632 | 100 | <- | Minus |
arm_2R | 18094224..18094914 | 425..1115 | 100 | <- | Minus |
arm_2R | 18095067..18095474 | 17..424 | 100 | | Minus |
BS14973.pep Sequence
Translation from 16 to 1632
> BS14973.pep
MHISQRRCLYPIFLFLLAFVGTALGRVQEVHNVLELTGQKASKLRFSTDV
ATGKYTPPEEMDPQFWYKLADEEIAKRLQLPQPNSDRAKNVIMFLGDGMP
ISTVTAARILKGQRQGNTGEESSLSFEKFPYSGLSRTYCANAQVPDSACT
ATAYLCGVKTNIINIGVSAAVNFNNCTASQDPANRLTSIAEWAQNAGKST
GFVTTTTLTHASPSGAYAKTANRMWQSDTDVTSYGVDASTCVDMATQLVT
QTPGKNFEVMFGGGMGKFLPKTTKDSHGKYGERSDGVNLLSRWQGLHDKG
VLVTNRKQLLNLDVSAASSIIGTFQSGLMDFHMDADPTYQPTLSELTEVA
IKKLSHNENGYFVFIEGGLIDYGNHYTQAGYALDEALEFEKAIQLAREMT
NISDTLIVVTADHGHAVSIAGYPGRGTPILGLNQHDTDINGVKYSVLNYA
AGPNQYLDEHGQRIPLDDILGPDDAISPSYIDKEIGVHSGEDVGIWASGP
QSHLFTGVMQQSTIPHLMAYASCVGSGKQVCGSSGRKT*
BS14973.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:32:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3290-PA | 538 | CG3290-PA | 1..538 | 1..538 | 2817 | 100 | Plus |
CG3264-PB | 533 | CG3264-PB | 1..531 | 1..531 | 2396 | 85.9 | Plus |
CG3264-PA | 533 | CG3264-PA | 1..531 | 1..531 | 2396 | 85.9 | Plus |
CG3292-PA | 543 | CG3292-PA | 7..539 | 12..531 | 1781 | 64 | Plus |
CG5656-PA | 523 | CG5656-PA | 22..513 | 54..531 | 1101 | 47 | Plus |