Clone BS14974 Report

Search the DGRC for BS14974

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:149
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptCG7770-RA
Protein status:BS14974.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14974.3prime Sequence

408 bp (408 high quality bases) assembled on 2006-10-13

> BS14974.3prime
ATGGTCTAGAAAGCTTTTACTGCATGGCCGCCGCCACCTGACACTGCTGT
TGGTACTTGGCCACGGATTCCCGATGCTTCAGCATGTCCTTCTCCATGTT
CTCCAGTGCGTCGGTGGAGCTCTTCAGCTCCTTGGAGATGTACTCGATGC
GCTTTCCGACATTCTGGCGCGACTCCTCCAGCTCCTGTTTGACCAGAACG
GGCCCGAAGAGCTTGTAGACCTTGTTGTCGGGGCCCAGAAGATTCAGCTC
GTCCAGGACGCACTTGTTCTCGTTCAGCTGGCTTTCGAGCACTGCTCGCT
GCTTCACCATCTTCAAGCAGGATTTTTGCAGGTTCTGGTACGACTCAATC
TCGGCCTGCATCTTTTTGTACAACGCTGCGCTCTTCTTGTCCATGTCGAC
TGATAACT

BS14974.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:55:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG7770-PA 378 CG7770-RA 1..378 394..17 1890 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:23:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG7770-RB 847 CG7770-RB 152..530 394..16 1895 100 Minus
CG7770-RA 650 CG7770-RA 152..530 394..16 1895 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:23:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19923982..19924208 321..95 1135 100 Minus
3L 28110227 3L 19924292..19924371 95..16 400 100 Minus
3L 28110227 3L 19923822..19923894 394..322 365 100 Minus
Blast to na_te.dros performed on 2015-01-31 10:23:08 has no hits.

BS14974.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:40 Download gff for BS14974.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7770-PA 1..378 17..394 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:37:48 Download gff for BS14974.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7770-RA 152..530 16..394 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:46:40 Download gff for BS14974.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7770-RA 152..530 16..394 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:46:40 Download gff for BS14974.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19923822..19923894 322..394 100 -> Minus
3L 19923982..19924207 96..321 100 -> Minus
3L 19924292..19924371 16..95 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:37:48 Download gff for BS14974.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19916922..19916994 322..394 100 -> Minus
arm_3L 19917082..19917307 96..321 100 -> Minus
arm_3L 19917392..19917471 16..95 100   Minus

BS14974.5prime Sequence

408 bp (408 high quality bases) assembled on 2006-10-13

> BS14974.5prime
GAAGTTATCAGTCGACATGGACAAGAAGAGCGCAGCGTTGTACAAAAAGA
TGCAGGCCGAGATTGAGTCGTACCAGAACCTGCAAAAATCCTGCTTGAAG
ATGGTGAAGCAGCGAGCAGTGCTCGAAAGCCAGCTGAACGAGAACAAGTG
CGTCCTGGACGAGCTGAATCTTCTGGGCCCCGACAACAAGGTCTACAAGC
TCTTCGGGCCCGTTCTGGTCAAACAGGAGCTGGAGGAGTCGCGCCAGAAT
GTCGGAAAGCGCATCGAGTACATCTCCAAGGAGCTGAAGAGCTCCACCGA
CGCACTGGAGAACATGGAGAAGGACATGCTGAAGCATCGGGAATCCGTGG
CCAAGTACCAACAGCAGTGTCAGGTGGCGGCGGCCATGCAGTAAAAGCTT
TCTAGACC

BS14974.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:55:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG7770-PA 378 CG7770-RA 1..378 17..394 1890 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:37:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG7770-RB 847 CG7770-RB 152..530 17..395 1895 100 Plus
CG7770-RA 650 CG7770-RA 152..530 17..395 1895 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:36:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19923982..19924208 90..316 1135 100 Plus
3L 28110227 3L 19924292..19924371 316..395 400 100 Plus
3L 28110227 3L 19923822..19923894 17..89 365 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:37:00 has no hits.

BS14974.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:40 Download gff for BS14974.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7770-PA 1..378 17..394 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:27:00 Download gff for BS14974.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7770-RA 152..530 17..395 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:10:18 Download gff for BS14974.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7770-RA 152..530 17..395 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:10:18 Download gff for BS14974.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19923982..19924207 90..315 100 -> Plus
3L 19924292..19924371 316..395 100   Plus
3L 19923822..19923894 17..89 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:27:00 Download gff for BS14974.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19916922..19916994 17..89 100 -> Plus
arm_3L 19917082..19917307 90..315 100 -> Plus
arm_3L 19917392..19917471 316..395 100   Plus

BS14974.complete Sequence

410 bp assembled on 2006-11-01

GenBank Submission: FJ637844

> BS14974.complete
GAAGTTATCAGTCGACATGGACAAGAAGAGCGCAGCGTTGTACAAAAAGA
TGCAGGCCGAGATTGAGTCGTACCAGAACCTGCAAAAATCCTGCTTGAAG
ATGGTGAAGCAGCGAGCAGTGCTCGAAAGCCAGCTGAACGAGAACAAGTG
CGTCCTGGACGAGCTGAATCTTCTGGGCCCCGACAACAAGGTCTACAAGC
TCTTCGGGCCCGTTCTGGTCAAACAGGAGCTGGAGGAGTCGCGCCAGAAT
GTCGGAAAGCGCATCGAGTACATCTCCAAGGAGCTGAAGAGCTCCACCGA
CGCACTGGAGAACATGGAGAAGGACATGCTGAAGCATCGGGAATCCGTGG
CCAAGTACCAACAGCAGTGTCAGGTGGCGGCGGCCATGCAGTAAAAGCTT
TCTAGACCAT

BS14974.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:49:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG7770-RB 378 CG7770-PB 1..378 17..394 1890 100 Plus
CG7770-RA 378 CG7770-PA 1..378 17..394 1890 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:49:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG7770-RB 847 CG7770-RB 152..530 17..395 1895 100 Plus
CG7770-RA 650 CG7770-RA 152..530 17..395 1895 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:49:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19923982..19924208 90..316 1135 100 Plus
3L 28110227 3L 19924292..19924371 316..395 400 100 Plus
3L 28110227 3L 19923822..19923894 17..89 365 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:49:06 has no hits.

BS14974.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:22:36 Download gff for BS14974.complete
Subject Subject Range Query Range Percent Splice Strand
CG7770-RA 1..378 17..394 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:54:41 Download gff for BS14974.complete
Subject Subject Range Query Range Percent Splice Strand
CG7770-RA 130..508 17..395 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:33:22 Download gff for BS14974.complete
Subject Subject Range Query Range Percent Splice Strand
CG7770-RA 152..527 17..392 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:22:36 Download gff for BS14974.complete
Subject Subject Range Query Range Percent Splice Strand
CG7770-RA 130..508 17..395 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:24 Download gff for BS14974.complete
Subject Subject Range Query Range Percent Splice Strand
CG7770-RA 152..527 17..392 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:53:24 Download gff for BS14974.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19923822..19923894 17..89 100 -> Plus
3L 19923982..19924207 90..315 100 -> Plus
3L 19924292..19924368 316..392 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:33:22 Download gff for BS14974.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19916922..19916994 17..89 100 -> Plus
arm_3L 19917082..19917307 90..315 100 -> Plus
arm_3L 19917392..19917468 316..392 100   Plus

BS14974.pep Sequence

Translation from 16 to 393

> BS14974.pep
MDKKSAALYKKMQAEIESYQNLQKSCLKMVKQRAVLESQLNENKCVLDEL
NLLGPDNKVYKLFGPVLVKQELEESRQNVGKRIEYISKELKSSTDALENM
EKDMLKHRESVAKYQQQCQVAAAMQ*

BS14974.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG7770-PB 125 CG7770-PB 1..125 1..125 625 100 Plus
CG7770-PA 125 CG7770-PA 1..125 1..125 625 100 Plus