Clone Sequence Records
BS14974.3prime Sequence
408 bp (408 high quality bases) assembled on 2006-10-13
> BS14974.3prime
ATGGTCTAGAAAGCTTTTACTGCATGGCCGCCGCCACCTGACACTGCTGT
TGGTACTTGGCCACGGATTCCCGATGCTTCAGCATGTCCTTCTCCATGTT
CTCCAGTGCGTCGGTGGAGCTCTTCAGCTCCTTGGAGATGTACTCGATGC
GCTTTCCGACATTCTGGCGCGACTCCTCCAGCTCCTGTTTGACCAGAACG
GGCCCGAAGAGCTTGTAGACCTTGTTGTCGGGGCCCAGAAGATTCAGCTC
GTCCAGGACGCACTTGTTCTCGTTCAGCTGGCTTTCGAGCACTGCTCGCT
GCTTCACCATCTTCAAGCAGGATTTTTGCAGGTTCTGGTACGACTCAATC
TCGGCCTGCATCTTTTTGTACAACGCTGCGCTCTTCTTGTCCATGTCGAC
TGATAACT
BS14974.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:55:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7770-PA | 378 | CG7770-RA | 1..378 | 394..17 | 1890 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:23:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7770-RB | 847 | CG7770-RB | 152..530 | 394..16 | 1895 | 100 | Minus |
CG7770-RA | 650 | CG7770-RA | 152..530 | 394..16 | 1895 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:23:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19923982..19924208 | 321..95 | 1135 | 100 | Minus |
3L | 28110227 | 3L | 19924292..19924371 | 95..16 | 400 | 100 | Minus |
3L | 28110227 | 3L | 19923822..19923894 | 394..322 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:23:08 has no hits.
BS14974.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:40 Download gff for
BS14974.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7770-PA | 1..378 | 17..394 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:37:48 Download gff for
BS14974.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7770-RA | 152..530 | 16..394 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:46:40 Download gff for
BS14974.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7770-RA | 152..530 | 16..394 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:46:40 Download gff for
BS14974.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19923822..19923894 | 322..394 | 100 | -> | Minus |
3L | 19923982..19924207 | 96..321 | 100 | -> | Minus |
3L | 19924292..19924371 | 16..95 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:37:48 Download gff for
BS14974.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19916922..19916994 | 322..394 | 100 | -> | Minus |
arm_3L | 19917082..19917307 | 96..321 | 100 | -> | Minus |
arm_3L | 19917392..19917471 | 16..95 | 100 | | Minus |
BS14974.5prime Sequence
408 bp (408 high quality bases) assembled on 2006-10-13
> BS14974.5prime
GAAGTTATCAGTCGACATGGACAAGAAGAGCGCAGCGTTGTACAAAAAGA
TGCAGGCCGAGATTGAGTCGTACCAGAACCTGCAAAAATCCTGCTTGAAG
ATGGTGAAGCAGCGAGCAGTGCTCGAAAGCCAGCTGAACGAGAACAAGTG
CGTCCTGGACGAGCTGAATCTTCTGGGCCCCGACAACAAGGTCTACAAGC
TCTTCGGGCCCGTTCTGGTCAAACAGGAGCTGGAGGAGTCGCGCCAGAAT
GTCGGAAAGCGCATCGAGTACATCTCCAAGGAGCTGAAGAGCTCCACCGA
CGCACTGGAGAACATGGAGAAGGACATGCTGAAGCATCGGGAATCCGTGG
CCAAGTACCAACAGCAGTGTCAGGTGGCGGCGGCCATGCAGTAAAAGCTT
TCTAGACC
BS14974.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:55:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7770-PA | 378 | CG7770-RA | 1..378 | 17..394 | 1890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:37:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7770-RB | 847 | CG7770-RB | 152..530 | 17..395 | 1895 | 100 | Plus |
CG7770-RA | 650 | CG7770-RA | 152..530 | 17..395 | 1895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:36:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19923982..19924208 | 90..316 | 1135 | 100 | Plus |
3L | 28110227 | 3L | 19924292..19924371 | 316..395 | 400 | 100 | Plus |
3L | 28110227 | 3L | 19923822..19923894 | 17..89 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:37:00 has no hits.
BS14974.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:40 Download gff for
BS14974.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7770-PA | 1..378 | 17..394 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:27:00 Download gff for
BS14974.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7770-RA | 152..530 | 17..395 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:10:18 Download gff for
BS14974.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7770-RA | 152..530 | 17..395 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:10:18 Download gff for
BS14974.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19923982..19924207 | 90..315 | 100 | -> | Plus |
3L | 19924292..19924371 | 316..395 | 100 | | Plus |
3L | 19923822..19923894 | 17..89 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:27:00 Download gff for
BS14974.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19916922..19916994 | 17..89 | 100 | -> | Plus |
arm_3L | 19917082..19917307 | 90..315 | 100 | -> | Plus |
arm_3L | 19917392..19917471 | 316..395 | 100 | | Plus |
BS14974.complete Sequence
410 bp assembled on 2006-11-01
GenBank Submission: FJ637844
> BS14974.complete
GAAGTTATCAGTCGACATGGACAAGAAGAGCGCAGCGTTGTACAAAAAGA
TGCAGGCCGAGATTGAGTCGTACCAGAACCTGCAAAAATCCTGCTTGAAG
ATGGTGAAGCAGCGAGCAGTGCTCGAAAGCCAGCTGAACGAGAACAAGTG
CGTCCTGGACGAGCTGAATCTTCTGGGCCCCGACAACAAGGTCTACAAGC
TCTTCGGGCCCGTTCTGGTCAAACAGGAGCTGGAGGAGTCGCGCCAGAAT
GTCGGAAAGCGCATCGAGTACATCTCCAAGGAGCTGAAGAGCTCCACCGA
CGCACTGGAGAACATGGAGAAGGACATGCTGAAGCATCGGGAATCCGTGG
CCAAGTACCAACAGCAGTGTCAGGTGGCGGCGGCCATGCAGTAAAAGCTT
TCTAGACCAT
BS14974.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:49:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7770-RB | 378 | CG7770-PB | 1..378 | 17..394 | 1890 | 100 | Plus |
CG7770-RA | 378 | CG7770-PA | 1..378 | 17..394 | 1890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:49:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7770-RB | 847 | CG7770-RB | 152..530 | 17..395 | 1895 | 100 | Plus |
CG7770-RA | 650 | CG7770-RA | 152..530 | 17..395 | 1895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:49:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19923982..19924208 | 90..316 | 1135 | 100 | Plus |
3L | 28110227 | 3L | 19924292..19924371 | 316..395 | 400 | 100 | Plus |
3L | 28110227 | 3L | 19923822..19923894 | 17..89 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:49:06 has no hits.
BS14974.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:22:36 Download gff for
BS14974.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7770-RA | 1..378 | 17..394 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:54:41 Download gff for
BS14974.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7770-RA | 130..508 | 17..395 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:33:22 Download gff for
BS14974.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7770-RA | 152..527 | 17..392 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:22:36 Download gff for
BS14974.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7770-RA | 130..508 | 17..395 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:24 Download gff for
BS14974.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7770-RA | 152..527 | 17..392 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:53:24 Download gff for
BS14974.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19923822..19923894 | 17..89 | 100 | -> | Plus |
3L | 19923982..19924207 | 90..315 | 100 | -> | Plus |
3L | 19924292..19924368 | 316..392 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:33:22 Download gff for
BS14974.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19916922..19916994 | 17..89 | 100 | -> | Plus |
arm_3L | 19917082..19917307 | 90..315 | 100 | -> | Plus |
arm_3L | 19917392..19917468 | 316..392 | 100 | | Plus |
BS14974.pep Sequence
Translation from 16 to 393
> BS14974.pep
MDKKSAALYKKMQAEIESYQNLQKSCLKMVKQRAVLESQLNENKCVLDEL
NLLGPDNKVYKLFGPVLVKQELEESRQNVGKRIEYISKELKSSTDALENM
EKDMLKHRESVAKYQQQCQVAAAMQ*
BS14974.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7770-PB | 125 | CG7770-PB | 1..125 | 1..125 | 625 | 100 | Plus |
CG7770-PA | 125 | CG7770-PA | 1..125 | 1..125 | 625 | 100 | Plus |