Clone BS14978 Report

Search the DGRC for BS14978

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:149
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptCG14434-RA
Protein status:BS14978.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14978.5prime Sequence

594 bp (594 high quality bases) assembled on 2006-10-13

> BS14978.5prime
GAAGTTATCAGTCGACATGTGCGAATCGGTTACTCCGGCGGATCAGCGCA
ATGTGGAGGTGAAGGCACGGATTCCGGGTGGATCTGAGGGCTTTGAGCAG
CGCCTAATCCTGGCCAGAAACCTAAGCGGCAGCCAGGATGCGCAGTTAAT
CGAGCAGAGGGACGTCTTCTTTGAATCTCCGCTGGGTGGACGGCTTAAAT
TGCGCTACTTACAGACGCCATCGCGCTCCCAATTGGTCTACTACGATCGT
CCCGATGTGGCCGGTCCCAAGCTTTCCAAGTTCAACAAGACGGAGGTGGA
CGAACCGGAGGTGCTGGAGAAGATCCTGAGCCAGTCGAACGGCGTACTTG
GTGTCCTGGCCAAGCGACGGCACTTGTTCCTTTGCGGACAGACGCGCATC
CACCTGGACGAGGTAAAGGATCTGGGATACTTCATGGAACTGGAGGTGTG
CCTGACAGAGGATCAAACCCTCGAGGAGGGTCAAGCCATCGCCGAGAAAC
TGTCCAGGGAACTGGGTATCCAGGAGGCGGACCTCATGATCGGCTCGTAT
TTCGATGCTCTCAGAAAGCTCAATCATTAAAAGCTTTCTAGACC

BS14978.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:55:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG14434-PA 564 CG14434-RA 1..564 17..580 2745 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:40:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG14434-RC 1507 CG14434-RC 805..1370 15..580 2785 99.5 Plus
CG14434-RB 987 CG14434-RB 285..850 15..580 2785 99.5 Plus
CG14434-RA 730 CG14434-RA 28..593 15..580 2785 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:40:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6852046..6852611 580..15 2785 99.5 Minus
Blast to na_te.dros performed on 2015-02-02 17:40:47 has no hits.

BS14978.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:43 Download gff for BS14978.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14434-PA 1..564 17..580 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:39:00 Download gff for BS14978.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14434-RA 28..599 15..588 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:10:31 Download gff for BS14978.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14434-RA 28..599 15..588 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:10:31 Download gff for BS14978.5prime
Subject Subject Range Query Range Percent Splice Strand
X 6852040..6852611 15..588 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:39:00 Download gff for BS14978.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6746073..6746644 15..588 98   Minus

BS14978.3prime Sequence

594 bp (594 high quality bases) assembled on 2006-10-13

> BS14978.3prime
ATGGTCTAGAAAGCTTTTAATGATTGAGCTTTCTGAGAGCATCGAAATAC
GAGCCGATCATGAGGTCCGCCTCCTGGATACCCAGTTCCCTGGACAGTTT
CTCGGCGATGGCTTGACCCTCCTCGAGGGTTTGATCCTCTGTCAGGCACA
CCTCCAGTTCCATGAAGTATCCCAGATCCTTTACCTCGTCCAGGTGGATG
CGCGTCTGTCCGCAAAGGAACAAGTGCCGTCGCTTGGCCAGGACACCAAG
TACGCCGTTCGACTGGCTCAGGATCTTCTCCAGCACCTCCGGTTCGTCCA
CCTCCGTCTTGTTGAACTTGGAAAGCTTGGGACCGGCCACATCGGGACGA
TCGTAGTAGACCAATTGGGAGCGCGATGGCGTCTGTAAGTAGCGCAATTT
AAGCCGTCCACCCAGCGGAGATTCAAAGAAGACGTCCCTCTGCTCGATTA
ACTGCGCATCCTGGCTGCCGCTTAGGTTTCTGGCCAGGATTAGGCGCTGC
TCAAAGCCCTCAGATCCACCCGGAATCCGTGCCTTCACCTCCACATTGCG
CTGATCCGCCGGAGTAACCGATTCGCACATGTCGACTGATAACT

BS14978.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:55:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG14434-PA 564 CG14434-RA 1..564 580..17 2745 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:47:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG14434-RC 1507 CG14434-RC 805..1370 582..17 2785 99.5 Minus
CG14434-RB 987 CG14434-RB 285..850 582..17 2785 99.5 Minus
CG14434-RA 730 CG14434-RA 28..593 582..17 2785 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:46:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6852046..6852611 17..582 2785 99.5 Plus
Blast to na_te.dros performed on 2015-02-11 17:46:57 has no hits.

BS14978.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:43 Download gff for BS14978.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14434-PA 1..564 17..580 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:25:29 Download gff for BS14978.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14434-RA 28..599 9..582 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:14:53 Download gff for BS14978.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14434-RA 28..599 9..582 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:14:53 Download gff for BS14978.3prime
Subject Subject Range Query Range Percent Splice Strand
X 6852040..6852611 9..582 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:25:29 Download gff for BS14978.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6746073..6746644 9..582 98   Plus

BS14978.complete Sequence

596 bp assembled on 2006-11-01

GenBank Submission: FJ637845

> BS14978.complete
GAAGTTATCAGTCGACATGTGCGAATCGGTTACTCCGGCGGATCAGCGCA
ATGTGGAGGTGAAGGCACGGATTCCGGGTGGATCTGAGGGCTTTGAGCAG
CGCCTAATCCTGGCCAGAAACCTAAGCGGCAGCCAGGATGCGCAGTTAAT
CGAGCAGAGGGACGTCTTCTTTGAATCTCCGCTGGGTGGACGGCTTAAAT
TGCGCTACTTACAGACGCCATCGCGCTCCCAATTGGTCTACTACGATCGT
CCCGATGTGGCCGGTCCCAAGCTTTCCAAGTTCAACAAGACGGAGGTGGA
CGAACCGGAGGTGCTGGAGAAGATCCTGAGCCAGTCGAACGGCGTACTTG
GTGTCCTGGCCAAGCGACGGCACTTGTTCCTTTGCGGACAGACGCGCATC
CACCTGGACGAGGTAAAGGATCTGGGATACTTCATGGAACTGGAGGTGTG
CCTGACAGAGGATCAAACCCTCGAGGAGGGTCAAGCCATCGCCGAGAAAC
TGTCCAGGGAACTGGGTATCCAGGAGGCGGACCTCATGATCGGCTCGTAT
TTCGATGCTCTCAGAAAGCTCAATCATTAAAAGCTTTCTAGACCAT

BS14978.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:04:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG14434-RC 645 CG14434-PC 80..645 15..580 2785 99.5 Plus
CG14434-RB 564 CG14434-PB 1..564 17..580 2775 99.5 Plus
CG14434-RA 564 CG14434-PA 1..564 17..580 2775 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:04:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG14434-RC 1507 CG14434-RC 805..1370 15..580 2785 99.5 Plus
CG14434-RB 987 CG14434-RB 285..850 15..580 2785 99.5 Plus
CG14434-RA 730 CG14434-RA 28..593 15..580 2785 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:04:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6852046..6852611 580..15 2785 99.5 Minus
Blast to na_te.dros performed on 2014-11-27 01:04:48 has no hits.

BS14978.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:35 Download gff for BS14978.complete
Subject Subject Range Query Range Percent Splice Strand
CG14434-RA 1..564 17..580 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:53:28 Download gff for BS14978.complete
Subject Subject Range Query Range Percent Splice Strand
CG14434-RA 28..599 15..588 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:44:21 Download gff for BS14978.complete
Subject Subject Range Query Range Percent Splice Strand
CG14434-RA 30..591 17..578 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:35 Download gff for BS14978.complete
Subject Subject Range Query Range Percent Splice Strand
CG14434-RA 13..584 15..588 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:18:00 Download gff for BS14978.complete
Subject Subject Range Query Range Percent Splice Strand
CG14434-RA 30..591 17..578 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:18:00 Download gff for BS14978.complete
Subject Subject Range Query Range Percent Splice Strand
X 6852048..6852609 17..578 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:44:21 Download gff for BS14978.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6746081..6746642 17..578 99   Minus

BS14978.pep Sequence

Translation from 16 to 579

> BS14978.pep
MCESVTPADQRNVEVKARIPGGSEGFEQRLILARNLSGSQDAQLIEQRDV
FFESPLGGRLKLRYLQTPSRSQLVYYDRPDVAGPKLSKFNKTEVDEPEVL
EKILSQSNGVLGVLAKRRHLFLCGQTRIHLDEVKDLGYFMELEVCLTEDQ
TLEEGQAIAEKLSRELGIQEADLMIGSYFDALRKLNH*

BS14978.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG14434-PB 187 CG14434-PB 1..187 1..187 949 100 Plus
CG14434-PA 187 CG14434-PA 1..187 1..187 949 100 Plus
CG14434-PC 214 CG14434-PC 28..214 1..187 949 100 Plus