Clone Sequence Records
BS14978.5prime Sequence
594 bp (594 high quality bases) assembled on 2006-10-13
> BS14978.5prime
GAAGTTATCAGTCGACATGTGCGAATCGGTTACTCCGGCGGATCAGCGCA
ATGTGGAGGTGAAGGCACGGATTCCGGGTGGATCTGAGGGCTTTGAGCAG
CGCCTAATCCTGGCCAGAAACCTAAGCGGCAGCCAGGATGCGCAGTTAAT
CGAGCAGAGGGACGTCTTCTTTGAATCTCCGCTGGGTGGACGGCTTAAAT
TGCGCTACTTACAGACGCCATCGCGCTCCCAATTGGTCTACTACGATCGT
CCCGATGTGGCCGGTCCCAAGCTTTCCAAGTTCAACAAGACGGAGGTGGA
CGAACCGGAGGTGCTGGAGAAGATCCTGAGCCAGTCGAACGGCGTACTTG
GTGTCCTGGCCAAGCGACGGCACTTGTTCCTTTGCGGACAGACGCGCATC
CACCTGGACGAGGTAAAGGATCTGGGATACTTCATGGAACTGGAGGTGTG
CCTGACAGAGGATCAAACCCTCGAGGAGGGTCAAGCCATCGCCGAGAAAC
TGTCCAGGGAACTGGGTATCCAGGAGGCGGACCTCATGATCGGCTCGTAT
TTCGATGCTCTCAGAAAGCTCAATCATTAAAAGCTTTCTAGACC
BS14978.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:55:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14434-PA | 564 | CG14434-RA | 1..564 | 17..580 | 2745 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:40:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14434-RC | 1507 | CG14434-RC | 805..1370 | 15..580 | 2785 | 99.5 | Plus |
CG14434-RB | 987 | CG14434-RB | 285..850 | 15..580 | 2785 | 99.5 | Plus |
CG14434-RA | 730 | CG14434-RA | 28..593 | 15..580 | 2785 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:40:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6852046..6852611 | 580..15 | 2785 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-02 17:40:47 has no hits.
BS14978.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:43 Download gff for
BS14978.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14434-PA | 1..564 | 17..580 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:39:00 Download gff for
BS14978.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14434-RA | 28..599 | 15..588 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:10:31 Download gff for
BS14978.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14434-RA | 28..599 | 15..588 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:10:31 Download gff for
BS14978.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6852040..6852611 | 15..588 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:39:00 Download gff for
BS14978.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6746073..6746644 | 15..588 | 98 | | Minus |
BS14978.3prime Sequence
594 bp (594 high quality bases) assembled on 2006-10-13
> BS14978.3prime
ATGGTCTAGAAAGCTTTTAATGATTGAGCTTTCTGAGAGCATCGAAATAC
GAGCCGATCATGAGGTCCGCCTCCTGGATACCCAGTTCCCTGGACAGTTT
CTCGGCGATGGCTTGACCCTCCTCGAGGGTTTGATCCTCTGTCAGGCACA
CCTCCAGTTCCATGAAGTATCCCAGATCCTTTACCTCGTCCAGGTGGATG
CGCGTCTGTCCGCAAAGGAACAAGTGCCGTCGCTTGGCCAGGACACCAAG
TACGCCGTTCGACTGGCTCAGGATCTTCTCCAGCACCTCCGGTTCGTCCA
CCTCCGTCTTGTTGAACTTGGAAAGCTTGGGACCGGCCACATCGGGACGA
TCGTAGTAGACCAATTGGGAGCGCGATGGCGTCTGTAAGTAGCGCAATTT
AAGCCGTCCACCCAGCGGAGATTCAAAGAAGACGTCCCTCTGCTCGATTA
ACTGCGCATCCTGGCTGCCGCTTAGGTTTCTGGCCAGGATTAGGCGCTGC
TCAAAGCCCTCAGATCCACCCGGAATCCGTGCCTTCACCTCCACATTGCG
CTGATCCGCCGGAGTAACCGATTCGCACATGTCGACTGATAACT
BS14978.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:55:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14434-PA | 564 | CG14434-RA | 1..564 | 580..17 | 2745 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:47:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14434-RC | 1507 | CG14434-RC | 805..1370 | 582..17 | 2785 | 99.5 | Minus |
CG14434-RB | 987 | CG14434-RB | 285..850 | 582..17 | 2785 | 99.5 | Minus |
CG14434-RA | 730 | CG14434-RA | 28..593 | 582..17 | 2785 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:46:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6852046..6852611 | 17..582 | 2785 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:46:57 has no hits.
BS14978.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:43 Download gff for
BS14978.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14434-PA | 1..564 | 17..580 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:25:29 Download gff for
BS14978.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14434-RA | 28..599 | 9..582 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:14:53 Download gff for
BS14978.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14434-RA | 28..599 | 9..582 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:14:53 Download gff for
BS14978.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6852040..6852611 | 9..582 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:25:29 Download gff for
BS14978.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6746073..6746644 | 9..582 | 98 | | Plus |
BS14978.complete Sequence
596 bp assembled on 2006-11-01
GenBank Submission: FJ637845
> BS14978.complete
GAAGTTATCAGTCGACATGTGCGAATCGGTTACTCCGGCGGATCAGCGCA
ATGTGGAGGTGAAGGCACGGATTCCGGGTGGATCTGAGGGCTTTGAGCAG
CGCCTAATCCTGGCCAGAAACCTAAGCGGCAGCCAGGATGCGCAGTTAAT
CGAGCAGAGGGACGTCTTCTTTGAATCTCCGCTGGGTGGACGGCTTAAAT
TGCGCTACTTACAGACGCCATCGCGCTCCCAATTGGTCTACTACGATCGT
CCCGATGTGGCCGGTCCCAAGCTTTCCAAGTTCAACAAGACGGAGGTGGA
CGAACCGGAGGTGCTGGAGAAGATCCTGAGCCAGTCGAACGGCGTACTTG
GTGTCCTGGCCAAGCGACGGCACTTGTTCCTTTGCGGACAGACGCGCATC
CACCTGGACGAGGTAAAGGATCTGGGATACTTCATGGAACTGGAGGTGTG
CCTGACAGAGGATCAAACCCTCGAGGAGGGTCAAGCCATCGCCGAGAAAC
TGTCCAGGGAACTGGGTATCCAGGAGGCGGACCTCATGATCGGCTCGTAT
TTCGATGCTCTCAGAAAGCTCAATCATTAAAAGCTTTCTAGACCAT
BS14978.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:04:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14434-RC | 645 | CG14434-PC | 80..645 | 15..580 | 2785 | 99.5 | Plus |
CG14434-RB | 564 | CG14434-PB | 1..564 | 17..580 | 2775 | 99.5 | Plus |
CG14434-RA | 564 | CG14434-PA | 1..564 | 17..580 | 2775 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:04:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14434-RC | 1507 | CG14434-RC | 805..1370 | 15..580 | 2785 | 99.5 | Plus |
CG14434-RB | 987 | CG14434-RB | 285..850 | 15..580 | 2785 | 99.5 | Plus |
CG14434-RA | 730 | CG14434-RA | 28..593 | 15..580 | 2785 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:04:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6852046..6852611 | 580..15 | 2785 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:04:48 has no hits.
BS14978.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:35 Download gff for
BS14978.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14434-RA | 1..564 | 17..580 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:53:28 Download gff for
BS14978.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14434-RA | 28..599 | 15..588 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:44:21 Download gff for
BS14978.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14434-RA | 30..591 | 17..578 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:35 Download gff for
BS14978.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14434-RA | 13..584 | 15..588 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:18:00 Download gff for
BS14978.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14434-RA | 30..591 | 17..578 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:18:00 Download gff for
BS14978.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6852048..6852609 | 17..578 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:44:21 Download gff for
BS14978.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6746081..6746642 | 17..578 | 99 | | Minus |
BS14978.pep Sequence
Translation from 16 to 579
> BS14978.pep
MCESVTPADQRNVEVKARIPGGSEGFEQRLILARNLSGSQDAQLIEQRDV
FFESPLGGRLKLRYLQTPSRSQLVYYDRPDVAGPKLSKFNKTEVDEPEVL
EKILSQSNGVLGVLAKRRHLFLCGQTRIHLDEVKDLGYFMELEVCLTEDQ
TLEEGQAIAEKLSRELGIQEADLMIGSYFDALRKLNH*
BS14978.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14434-PB | 187 | CG14434-PB | 1..187 | 1..187 | 949 | 100 | Plus |
CG14434-PA | 187 | CG14434-PA | 1..187 | 1..187 | 949 | 100 | Plus |
CG14434-PC | 214 | CG14434-PC | 28..214 | 1..187 | 949 | 100 | Plus |