Clone Sequence Records
BS14979.3prime Sequence
826 bp (733 high quality bases) assembled on 2006-10-13
> BS14979.3prime
ATGGTCTAGAAAGCTTTCAAGTGGACTCCTTTTTTGGCTGAATTGTCAGC
AAGATGTCATCGGCGTTTTTGAACTTTAGCGATATATTTTCGACAAACTG
CAGCTTCTCCAGCTCAAAATCGCTCTGAAAATCAAAGTTCGTTATCAACT
TGACCAGGAAGACCTTCATGATAAAAAGACCATAGCGACGACCAATACAC
GATCGCAGTCCATTGGAGAAGGGCAAAAAGCTGTAGGAGTGTCGACGATC
ACGCTGCCTTCGTTTTTCACCCGATCCCGAATCATTGTGCCCCTTGGACA
GCTGCTCCTCTTCCTGATCGAGAAACCGCTGCGGATCGAATTGCCTGGCG
TTGGCGCCCCACCAACGCTCGTCGCGTTGCATATTAAACGTGTCCAGCAC
AACGATGCTATTTTGTGGCACAATCGTTTCGTGCTGCCTGCCCGCCAGCC
GAAAATCTCGACTAACATGACGCAAATTCATCGGCACGGTGGCCAACAGG
CGCAGCGATTCGCTGACAAAGGCATCGAGATAGCGCAACTGCTGCAACTG
CTCCAAGCCCACTTGGCCAACATCCGGCACCAGTGCCCTAATCTCCGCCA
GCAAACGTCGCTGGCAATCACCCTTGTTGGTGGCCAAGCAGAGCAGGGCC
AGCATTATGCTATTGGATACCGTCTCAAAGGACACCAGTACCATCGACTG
TGCCTCGTCCATGATCTCTTCGAGCGTCATCTCTCCATTGGCGGCCAACT
GAAAGATCTGTTCGATAAAGATGCGCCTCTGCCAGCCGTTAGATGCATCC
TCTCCAGACTTTTCACCGCCAACGGC
BS14979.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:55:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1786-PA | 1611 | Cyp318a1-RA | 802..1611 | 826..17 | 4050 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:41:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp318a1-RA | 1885 | CG1786-RA | 984..1793 | 826..17 | 4050 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:41:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12034411..12034903 | 683..191 | 2465 | 100 | Minus |
X | 23542271 | X | 12035015..12035191 | 193..17 | 885 | 100 | Minus |
X | 23542271 | X | 12034208..12034351 | 826..683 | 720 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 17:41:30 has no hits.
BS14979.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:44 Download gff for
BS14979.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1786-PA | 802..1611 | 17..826 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:39:05 Download gff for
BS14979.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp318a1-RA | 984..1801 | 10..826 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:10:38 Download gff for
BS14979.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp318a1-RA | 984..1801 | 10..826 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:10:38 Download gff for
BS14979.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12034208..12034351 | 683..826 | 100 | -> | Minus |
X | 12034412..12034901 | 193..682 | 100 | -> | Minus |
X | 12035016..12035199 | 10..192 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:39:05 Download gff for
BS14979.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11928241..11928384 | 683..826 | 100 | -> | Minus |
arm_X | 11928445..11928934 | 193..682 | 100 | -> | Minus |
arm_X | 11929049..11929232 | 10..192 | 98 | | Minus |
BS14979.5prime Sequence
862 bp (783 high quality bases) assembled on 2006-10-13
> BS14979.5prime
GAAGTTATCAGTCGACATGCACCTGAACATTGCCCTTTGGGCATGCGGCG
CCCTTCTGGCGGTGCTCCTCGCCTGGCAGCAGCGAAAGTGCTGGCGACTC
ATCTGGCAGCTGAACGGATGGCGCGGAGTGATCCAGCAGCCGGTGCTATG
GTTACTACTCTGCATCAATCTGCATCCGAACAGCATACTGGAGAAGGTAT
CCCAATATCGGGTGCACTTCCAGCGACCGCTGGCCGTTCTCGTTGGCACC
CGAGTCCTGCTCTATATCGATGATCCCGCCGGCATGGAGTGCGTTCTCAA
TGCGCCCGAATGCCTGGACAAGACCTTTCTGCAGGATGGCTTCTTTGTTC
GACGCGGTCTGCTCCATGCCAGAGGGCAAAAATGGAAATTGCGCCGCAAG
CAACTGAATCCCGCCTTCAGTCACAATATCGTGGCCAGTTTCTTCGATGT
CTTCAATTCGGTGGGCAATCAGATGGTGGAACAGTTCCAAACGCAGACGA
ATCTTCATGGACAGGCGGTTAAGTTTACGGCTGCCGAGGATTTGCTTAGT
CGAGCTGTACTCGAGGTATCCTGTTTGACCATTATGGGCACTCCAACCAA
TTTCACCCAATTGGATGACGCGCACATTGCCCACAGTTACAAGCGACTAT
TGGAAATCTCCGCCGTTCGCGTGGTGAAGCCATGGCTACAGATTCGCCTT
TTGCATCGCCTATTGGCGCCGGAACTTTACGAGGAGTCCAAAAAGTGCGC
CAAATTGCTGGAGGATTTCGTTGGCGGCATTGTGAGAACAAAGCATCGCA
ATTGGCGGCTAAGGGACGCCGTTGGCGGTGAAAGTCTGGAGAGGATGCAT
CTAACGGCTGGC
BS14979.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:55:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1786-PA | 1611 | Cyp318a1-RA | 1..817 | 17..833 | 4085 | 100 | Plus |
CG1786-PA | 1611 | Cyp318a1-RA | 816..847 | 831..862 | 160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:00:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp318a1-RA | 1885 | CG1786-RA | 183..1029 | 17..862 | 4210 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:59:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12034035..12034253 | 645..862 | 1045 | 99.5 | Plus |
X | 23542271 | X | 12033297..12033500 | 372..575 | 1020 | 100 | Plus |
X | 23542271 | X | 12033042..12033234 | 183..375 | 965 | 100 | Plus |
X | 23542271 | X | 12032814..12032980 | 17..183 | 835 | 100 | Plus |
X | 23542271 | X | 12033902..12033971 | 576..645 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:59:58 has no hits.
BS14979.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:44 Download gff for
BS14979.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1786-PA | 1..847 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:42:41 Download gff for
BS14979.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp318a1-RA | 179..1029 | 10..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:37:15 Download gff for
BS14979.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp318a1-RA | 179..1029 | 10..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:37:15 Download gff for
BS14979.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12032810..12032979 | 10..182 | 98 | -> | Plus |
X | 12033042..12033233 | 183..374 | 100 | -> | Plus |
X | 12033300..12033500 | 375..575 | 100 | -> | Plus |
X | 12033902..12033971 | 576..645 | 100 | -> | Plus |
X | 12034036..12034253 | 646..862 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:42:41 Download gff for
BS14979.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11926843..11927012 | 10..182 | 98 | -> | Plus |
arm_X | 11927075..11927266 | 183..374 | 100 | -> | Plus |
arm_X | 11927333..11927533 | 375..575 | 100 | -> | Plus |
arm_X | 11927935..11928004 | 576..645 | 100 | -> | Plus |
arm_X | 11928069..11928286 | 646..862 | 99 | | Plus |
BS14979.complete Sequence
1643 bp assembled on 2006-11-01
GenBank Submission: FJ637846
> BS14979.complete
GAAGTTATCAGTCGACATGCACCTGAACATTGCCCTTTGGGCATGCGGCG
CCCTTCTGGCGGTGCTCCTCGCCTGGCAGCAGCGAAAGTGCTGGCGACTC
ATCTGGCAGCTGAACGGATGGCGCGGAGTGATCCAGCAGCCGGTGCTATG
GTTACTACTCTGCATCAATCTGCATCCGAACAGCATACTGGAGAAGGTAT
CCCAATATCGGGTGCACTTCCAGCGACCGCTGGCCGTTCTCGTTGGCACC
CGAGTCCTGCTCTATATCGATGATCCCGCCGGCATGGAGTGCGTTCTCAA
TGCGCCCGAATGCCTGGACAAGACCTTTCTGCAGGATGGCTTCTTTGTTC
GACGCGGTCTGCTCCATGCCAGAGGGCAAAAATGGAAATTGCGCCGCAAG
CAACTGAATCCCGCCTTCAGTCACAATATCGTGGCCAGTTTCTTCGATGT
CTTCAATTCGGTGGGCAATCAGATGGTGGAACAGTTCCAAACGCAGACGA
ATCTTCATGGACAGGCGGTTAAGTTTACGGCTGCCGAGGATTTGCTTAGT
CGAGCTGTACTCGAGGTATCCTGTTTGACCATTATGGGCACTCCAACCAA
TTTCACCCAATTGGATGACGCGCACATTGCCCACAGTTACAAGCGACTAT
TGGAAATCTCCGCCGTTCGCGTGGTGAAGCCATGGCTACAGATTCGCCTT
TTGCATCGCCTATTGGCGCCGGAACTTTACGAGGAGTCCAAAAAGTGCGC
CAAATTGCTGGAGGATTTCGTTGGCGGCATTGTGAGAACAAAGCATCGCA
ATTGGCGGCTAAGGGACGCCGTTGGCGGTGAAAAGTCTGGAGAGGATGCA
TCTAACGGCTGGCAGAGGCGCATCTTTATCGAACAGATCTTTCAGTTGGC
CGCCAATGGAGAGATGACGCTCGAAGAGATCATGGACGAGGCACAGTCGA
TGGTACTGGTGTCCTTTGAGACGGTATCCAATAGCATAATGCTGGCCCTG
CTCTGCTTGGCCACCAACAAGGGTGATTGCCAGCGACGTTTGCTGGCGGA
GATTAGGGCACTGGTGCCGGATGTTGGCCAAGTGGGCTTGGAGCAGTTGC
AGCAGTTGCGCTATCTCGATGCCTTTGTCAGCGAATCGCTGCGCCTGTTG
GCCACCGTGCCGATGAATTTGCGTCATGTTAGTCGAGATTTTCGGCTGGC
GGGCAGGCAGCACGAAACGATTGTGCCACAAAATAGCATCGTTGTGCTGG
ACACGTTTAATATGCAACGCGACGAGCGTTGGTGGGGCGCCAACGCCAGG
CAATTCGATCCGCAGCGGTTTCTCGATCAGGAAGAGGAGCAGCTGTCCAA
GGGGCACAATGATTCGGGATCGGGTGAAAAACGAAGGCAGCGTGATCGTC
GACACTCCTACAGCTTTTTGCCCTTCTCCAATGGACTGCGATCGTGTATT
GGTCGTCGCTATGGTCTTTTTATCATGAAGGTCTTCCTGGTCAAGTTGAT
AACGAACTTTGATTTTCAGAGCGATTTTGAGCTGGAGAAGCTGCAGTTTG
TCGAAAATATATCGCTAAAGTTCAAAAACGCCGATGACATCTTGCTGACA
ATTCAGCCAAAAAAGGAGTCCACTTGAAAGCTTTCTAGACCAT
BS14979.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:54:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp318a1-RA | 1611 | CG1786-PA | 1..1611 | 17..1627 | 8055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp318a1-RA | 1885 | CG1786-RA | 183..1793 | 17..1627 | 8055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12034411..12034903 | 961..1453 | 2465 | 100 | Plus |
X | 23542271 | X | 12034035..12034351 | 645..961 | 1585 | 100 | Plus |
X | 23542271 | X | 12033297..12033500 | 372..575 | 1020 | 100 | Plus |
X | 23542271 | X | 12033042..12033234 | 183..375 | 965 | 100 | Plus |
X | 23542271 | X | 12035015..12035191 | 1451..1627 | 885 | 100 | Plus |
X | 23542271 | X | 12032814..12032980 | 17..183 | 835 | 100 | Plus |
X | 23542271 | X | 12033902..12033971 | 576..645 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:54:03 has no hits.
BS14979.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:52 Download gff for
BS14979.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp318a1-RA | 1..1611 | 17..1627 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:06:34 Download gff for
BS14979.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp318a1-RA | 179..1801 | 10..1634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:43 Download gff for
BS14979.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp318a1-RA | 183..1792 | 17..1626 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:52 Download gff for
BS14979.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp318a1-RA | 179..1801 | 10..1634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:55:15 Download gff for
BS14979.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp318a1-RA | 183..1792 | 17..1626 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:55:15 Download gff for
BS14979.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12034036..12034351 | 646..961 | 100 | -> | Plus |
X | 12032814..12032979 | 17..182 | 100 | -> | Plus |
X | 12033042..12033233 | 183..374 | 100 | -> | Plus |
X | 12033300..12033500 | 375..575 | 100 | -> | Plus |
X | 12033902..12033971 | 576..645 | 100 | -> | Plus |
X | 12034412..12034901 | 962..1451 | 100 | -> | Plus |
X | 12035016..12035190 | 1452..1626 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:43 Download gff for
BS14979.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11926847..11927012 | 17..182 | 100 | -> | Plus |
arm_X | 11927075..11927266 | 183..374 | 100 | -> | Plus |
arm_X | 11927333..11927533 | 375..575 | 100 | -> | Plus |
arm_X | 11927935..11928004 | 576..645 | 100 | -> | Plus |
arm_X | 11928069..11928384 | 646..961 | 100 | -> | Plus |
arm_X | 11928445..11928934 | 962..1451 | 100 | -> | Plus |
arm_X | 11929049..11929223 | 1452..1626 | 100 | | Plus |
BS14979.pep Sequence
Translation from 16 to 1626
> BS14979.pep
MHLNIALWACGALLAVLLAWQQRKCWRLIWQLNGWRGVIQQPVLWLLLCI
NLHPNSILEKVSQYRVHFQRPLAVLVGTRVLLYIDDPAGMECVLNAPECL
DKTFLQDGFFVRRGLLHARGQKWKLRRKQLNPAFSHNIVASFFDVFNSVG
NQMVEQFQTQTNLHGQAVKFTAAEDLLSRAVLEVSCLTIMGTPTNFTQLD
DAHIAHSYKRLLEISAVRVVKPWLQIRLLHRLLAPELYEESKKCAKLLED
FVGGIVRTKHRNWRLRDAVGGEKSGEDASNGWQRRIFIEQIFQLAANGEM
TLEEIMDEAQSMVLVSFETVSNSIMLALLCLATNKGDCQRRLLAEIRALV
PDVGQVGLEQLQQLRYLDAFVSESLRLLATVPMNLRHVSRDFRLAGRQHE
TIVPQNSIVVLDTFNMQRDERWWGANARQFDPQRFLDQEEEQLSKGHNDS
GSGEKRRQRDRRHSYSFLPFSNGLRSCIGRRYGLFIMKVFLVKLITNFDF
QSDFELEKLQFVENISLKFKNADDILLTIQPKKEST*
BS14979.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:29:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp318a1-PA | 536 | CG1786-PA | 1..536 | 1..536 | 2784 | 100 | Plus |
Cyp313b1-PB | 502 | CG9716-PB | 20..493 | 20..521 | 623 | 29.2 | Plus |
Cyp313b1-PA | 502 | CG9716-PA | 20..493 | 20..521 | 623 | 29.2 | Plus |
Cyp313a2-PB | 493 | CG10094-PB | 7..486 | 7..525 | 505 | 28.2 | Plus |
Cyp313a4-PA | 494 | CG6802-PA | 2..493 | 3..532 | 473 | 27.1 | Plus |