Clone BS14984 Report

Search the DGRC for BS14984

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:149
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptArl1-RA
Protein status:BS14984.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14984.3prime Sequence

573 bp (573 high quality bases) assembled on 2006-10-13

> BS14984.3prime
ATGGTCTAGAAAGCTTCTACTTGCGACTCTGCAGGGTGTTGGACAGCCAG
TCCATGGCCTGGTCGAGTCCCTCGCCCTTGGTGGCCGACGTTTTGAATAT
TTGAAATGTGCGGTTCTTTAGGTTCTCCAGTCCTAACGCATGATGGACCT
CGGCGACGGTCATGCATCCGTCCATGTCCTGCTTGTTCGCCAGGACGACC
AGTATCGCGCCGGCCAGCTCCTCCTCACGCAGCATGTACAGCAGCTCGTC
CTTGGAGATGCCAATGCGGTCCCGGTCCGCCGAGTCCACCACATAGATGA
TTGCGTCCGTGTTGCTGTAGTAGCAACGCCAATAAGGTCTAATACTTGTC
TGTCCGCCCAAATCCCAGACCTGGAACTTGAGGTTCTTGTAGGTGACCTG
CTCCACGTTGAAGCCGATGGTGGGTATCGTGGTGACCACCTCGCCCACCT
GCAGTCTGTAGAGGATCGTGGTCTTGCCGGCGCCGTCCAGGCCCAGGATC
AAGATGCGCATCTCCCGGGAGCCGAGCAGTCCGCGAAAGTAGCTGAGCAC
CCCACCCATGTCGACTGATAACT

BS14984.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:55:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG6025-PA 543 Arf72A-RA 1..543 559..17 2715 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:09:13
Subject Length Description Subject Range Query Range Score Percent Strand
Arl1-RA 863 CG6025-RA 142..686 560..16 2725 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:09:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15983860..15984185 341..16 1630 100 Minus
3L 28110227 3L 15983377..15983594 556..339 1090 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:09:10 has no hits.

BS14984.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:47 Download gff for BS14984.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6025-PA 1..543 17..559 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:04:18 Download gff for BS14984.3prime
Subject Subject Range Query Range Percent Splice Strand
Arl1-RA 131..691 11..568 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:38:48 Download gff for BS14984.3prime
Subject Subject Range Query Range Percent Splice Strand
Arl1-RA 131..691 11..568 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:38:48 Download gff for BS14984.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 15983373..15983594 339..564 98 -> Minus
3L 15983863..15984190 11..338 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:04:18 Download gff for BS14984.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15976473..15976694 339..564 98 -> Minus
arm_3L 15976963..15977290 11..338 99   Minus

BS14984.5prime Sequence

573 bp (573 high quality bases) assembled on 2006-10-13

> BS14984.5prime
GAAGTTATCAGTCGACATGGGTGGGGTGCTCAGCTACTTTCGCGGACTGC
TCGGCTCCCGGGAGATGCGCATCTTGATCCTGGGCCTGGACGGCGCCGGC
AAGACCACGATCCTCTACAGACTGCAGGTGGGCGAGGTGGTCACCACGAT
ACCCACCATCGGCTTCAACGTGGAGCAGGTCACCTACAAGAACCTCAAGT
TCCAGGTCTGGGATTTGGGCGGACAGACAAGTATTAGACCTTATTGGCGT
TGCTACTACAGCAACACGGACGCAATCATCTATGTGGTGGACTCGGCGGA
CCGGGACCGCATTGGCATCTCCAAGGACGAGCTGCTGTACATGCTGCGTG
AGGAGGAGCTGGCCGGCGCGATACTGGTCGTCCTGGCGAACAAGCAGGAC
ATGGACGGATGCATGACCGTCGCCGAGGTCCATCATGCGTTAGGACTGGA
GAACCTAAAGAACCGCACATTTCAAATATTCAAAACGTCGGCCACCAAGG
GCGAGGGACTCGACCAGGCCATGGACTGGCTGTCCAACACCCTGCAGAGT
CGCAAGTAGAAGCTTTCTAGACC

BS14984.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:55:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG6025-PA 543 Arf72A-RA 1..543 17..559 2715 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:30:31
Subject Length Description Subject Range Query Range Score Percent Strand
Arl1-RA 863 CG6025-RA 142..686 16..560 2725 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:30:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15983860..15984185 235..560 1630 100 Plus
3L 28110227 3L 15983377..15983594 20..237 1090 100 Plus
Blast to na_te.dros performed on 2015-02-03 06:30:28 has no hits.

BS14984.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:48 Download gff for BS14984.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6025-PA 1..543 17..559 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:28:14 Download gff for BS14984.5prime
Subject Subject Range Query Range Percent Splice Strand
Arl1-RA 131..691 8..565 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:02 Download gff for BS14984.5prime
Subject Subject Range Query Range Percent Splice Strand
Arl1-RA 131..691 8..565 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:02 Download gff for BS14984.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15983373..15983594 12..237 98 -> Plus
3L 15983863..15984190 238..565 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:28:14 Download gff for BS14984.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15976473..15976694 12..237 98 -> Plus
arm_3L 15976963..15977290 238..565 99   Plus

BS14984.complete Sequence

575 bp assembled on 2006-11-01

GenBank Submission: FJ637847

> BS14984.complete
GAAGTTATCAGTCGACATGGGTGGGGTGCTCAGCTACTTTCGCGGACTGC
TCGGCTCCCGGGAGATGCGCATCTTGATCCTGGGCCTGGACGGCGCCGGC
AAGACCACGATCCTCTACAGACTGCAGGTGGGCGAGGTGGTCACCACGAT
ACCCACCATCGGCTTCAACGTGGAGCAGGTCACCTACAAGAACCTCAAGT
TCCAGGTCTGGGATTTGGGCGGACAGACAAGTATTAGACCTTATTGGCGT
TGCTACTACAGCAACACGGACGCAATCATCTATGTGGTGGACTCGGCGGA
CCGGGACCGCATTGGCATCTCCAAGGACGAGCTGCTGTACATGCTGCGTG
AGGAGGAGCTGGCCGGCGCGATACTGGTCGTCCTGGCGAACAAGCAGGAC
ATGGACGGATGCATGACCGTCGCCGAGGTCCATCATGCGTTAGGACTGGA
GAACCTAAAGAACCGCACATTTCAAATATTCAAAACGTCGGCCACCAAGG
GCGAGGGACTCGACCAGGCCATGGACTGGCTGTCCAACACCCTGCAGAGT
CGCAAGTAGAAGCTTTCTAGACCAT

BS14984.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:02:35
Subject Length Description Subject Range Query Range Score Percent Strand
Arl1-RA 543 CG6025-PA 1..543 17..559 2715 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:02:36
Subject Length Description Subject Range Query Range Score Percent Strand
Arl1-RA 863 CG6025-RA 142..686 16..560 2725 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:02:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15983860..15984185 235..560 1630 100 Plus
3L 28110227 3L 15983377..15983594 20..237 1090 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:02:34 has no hits.

BS14984.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:53 Download gff for BS14984.complete
Subject Subject Range Query Range Percent Splice Strand
Arf72A-RA 1..543 17..559 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:06:36 Download gff for BS14984.complete
Subject Subject Range Query Range Percent Splice Strand
Arf72A-RA 145..705 8..565 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:50:57 Download gff for BS14984.complete
Subject Subject Range Query Range Percent Splice Strand
Arl1-RA 143..685 17..559 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:55 Download gff for BS14984.complete
Subject Subject Range Query Range Percent Splice Strand
Arf72A-RA 145..705 8..565 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:09:54 Download gff for BS14984.complete
Subject Subject Range Query Range Percent Splice Strand
Arl1-RA 143..685 17..559 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:09:54 Download gff for BS14984.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15983376..15983594 17..237 99 -> Plus
3L 15983863..15984184 238..559 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:50:57 Download gff for BS14984.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15976476..15976694 17..237 99 -> Plus
arm_3L 15976963..15977284 238..559 100   Plus

BS14984.pep Sequence

Translation from 16 to 558

> BS14984.pep
MGGVLSYFRGLLGSREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGF
NVEQVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSADRDRIG
ISKDELLYMLREEELAGAILVVLANKQDMDGCMTVAEVHHALGLENLKNR
TFQIFKTSATKGEGLDQAMDWLSNTLQSRK*

BS14984.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:29:44
Subject Length Description Subject Range Query Range Score Percent Strand
Arl1-PA 180 CG6025-PA 1..180 1..180 926 100 Plus
Arf79F-PJ 182 CG8385-PJ 1..179 1..178 548 57.5 Plus
Arf79F-PI 182 CG8385-PI 1..179 1..178 548 57.5 Plus
Arf79F-PH 182 CG8385-PH 1..179 1..178 548 57.5 Plus
Arf79F-PF 182 CG8385-PF 1..179 1..178 548 57.5 Plus