Clone Sequence Records
BS14984.3prime Sequence
573 bp (573 high quality bases) assembled on 2006-10-13
> BS14984.3prime
ATGGTCTAGAAAGCTTCTACTTGCGACTCTGCAGGGTGTTGGACAGCCAG
TCCATGGCCTGGTCGAGTCCCTCGCCCTTGGTGGCCGACGTTTTGAATAT
TTGAAATGTGCGGTTCTTTAGGTTCTCCAGTCCTAACGCATGATGGACCT
CGGCGACGGTCATGCATCCGTCCATGTCCTGCTTGTTCGCCAGGACGACC
AGTATCGCGCCGGCCAGCTCCTCCTCACGCAGCATGTACAGCAGCTCGTC
CTTGGAGATGCCAATGCGGTCCCGGTCCGCCGAGTCCACCACATAGATGA
TTGCGTCCGTGTTGCTGTAGTAGCAACGCCAATAAGGTCTAATACTTGTC
TGTCCGCCCAAATCCCAGACCTGGAACTTGAGGTTCTTGTAGGTGACCTG
CTCCACGTTGAAGCCGATGGTGGGTATCGTGGTGACCACCTCGCCCACCT
GCAGTCTGTAGAGGATCGTGGTCTTGCCGGCGCCGTCCAGGCCCAGGATC
AAGATGCGCATCTCCCGGGAGCCGAGCAGTCCGCGAAAGTAGCTGAGCAC
CCCACCCATGTCGACTGATAACT
BS14984.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:55:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6025-PA | 543 | Arf72A-RA | 1..543 | 559..17 | 2715 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:09:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arl1-RA | 863 | CG6025-RA | 142..686 | 560..16 | 2725 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:09:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15983860..15984185 | 341..16 | 1630 | 100 | Minus |
3L | 28110227 | 3L | 15983377..15983594 | 556..339 | 1090 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:09:10 has no hits.
BS14984.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:47 Download gff for
BS14984.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6025-PA | 1..543 | 17..559 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:04:18 Download gff for
BS14984.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arl1-RA | 131..691 | 11..568 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:38:48 Download gff for
BS14984.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arl1-RA | 131..691 | 11..568 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:38:48 Download gff for
BS14984.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15983373..15983594 | 339..564 | 98 | -> | Minus |
3L | 15983863..15984190 | 11..338 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:04:18 Download gff for
BS14984.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15976473..15976694 | 339..564 | 98 | -> | Minus |
arm_3L | 15976963..15977290 | 11..338 | 99 | | Minus |
BS14984.5prime Sequence
573 bp (573 high quality bases) assembled on 2006-10-13
> BS14984.5prime
GAAGTTATCAGTCGACATGGGTGGGGTGCTCAGCTACTTTCGCGGACTGC
TCGGCTCCCGGGAGATGCGCATCTTGATCCTGGGCCTGGACGGCGCCGGC
AAGACCACGATCCTCTACAGACTGCAGGTGGGCGAGGTGGTCACCACGAT
ACCCACCATCGGCTTCAACGTGGAGCAGGTCACCTACAAGAACCTCAAGT
TCCAGGTCTGGGATTTGGGCGGACAGACAAGTATTAGACCTTATTGGCGT
TGCTACTACAGCAACACGGACGCAATCATCTATGTGGTGGACTCGGCGGA
CCGGGACCGCATTGGCATCTCCAAGGACGAGCTGCTGTACATGCTGCGTG
AGGAGGAGCTGGCCGGCGCGATACTGGTCGTCCTGGCGAACAAGCAGGAC
ATGGACGGATGCATGACCGTCGCCGAGGTCCATCATGCGTTAGGACTGGA
GAACCTAAAGAACCGCACATTTCAAATATTCAAAACGTCGGCCACCAAGG
GCGAGGGACTCGACCAGGCCATGGACTGGCTGTCCAACACCCTGCAGAGT
CGCAAGTAGAAGCTTTCTAGACC
BS14984.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:55:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6025-PA | 543 | Arf72A-RA | 1..543 | 17..559 | 2715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:30:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arl1-RA | 863 | CG6025-RA | 142..686 | 16..560 | 2725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:30:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15983860..15984185 | 235..560 | 1630 | 100 | Plus |
3L | 28110227 | 3L | 15983377..15983594 | 20..237 | 1090 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:30:28 has no hits.
BS14984.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:48 Download gff for
BS14984.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6025-PA | 1..543 | 17..559 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:28:14 Download gff for
BS14984.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arl1-RA | 131..691 | 8..565 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:02 Download gff for
BS14984.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arl1-RA | 131..691 | 8..565 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:02 Download gff for
BS14984.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15983373..15983594 | 12..237 | 98 | -> | Plus |
3L | 15983863..15984190 | 238..565 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:28:14 Download gff for
BS14984.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15976473..15976694 | 12..237 | 98 | -> | Plus |
arm_3L | 15976963..15977290 | 238..565 | 99 | | Plus |
BS14984.complete Sequence
575 bp assembled on 2006-11-01
GenBank Submission: FJ637847
> BS14984.complete
GAAGTTATCAGTCGACATGGGTGGGGTGCTCAGCTACTTTCGCGGACTGC
TCGGCTCCCGGGAGATGCGCATCTTGATCCTGGGCCTGGACGGCGCCGGC
AAGACCACGATCCTCTACAGACTGCAGGTGGGCGAGGTGGTCACCACGAT
ACCCACCATCGGCTTCAACGTGGAGCAGGTCACCTACAAGAACCTCAAGT
TCCAGGTCTGGGATTTGGGCGGACAGACAAGTATTAGACCTTATTGGCGT
TGCTACTACAGCAACACGGACGCAATCATCTATGTGGTGGACTCGGCGGA
CCGGGACCGCATTGGCATCTCCAAGGACGAGCTGCTGTACATGCTGCGTG
AGGAGGAGCTGGCCGGCGCGATACTGGTCGTCCTGGCGAACAAGCAGGAC
ATGGACGGATGCATGACCGTCGCCGAGGTCCATCATGCGTTAGGACTGGA
GAACCTAAAGAACCGCACATTTCAAATATTCAAAACGTCGGCCACCAAGG
GCGAGGGACTCGACCAGGCCATGGACTGGCTGTCCAACACCCTGCAGAGT
CGCAAGTAGAAGCTTTCTAGACCAT
BS14984.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:02:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arl1-RA | 543 | CG6025-PA | 1..543 | 17..559 | 2715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:02:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arl1-RA | 863 | CG6025-RA | 142..686 | 16..560 | 2725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:02:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15983860..15984185 | 235..560 | 1630 | 100 | Plus |
3L | 28110227 | 3L | 15983377..15983594 | 20..237 | 1090 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:02:34 has no hits.
BS14984.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:53 Download gff for
BS14984.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arf72A-RA | 1..543 | 17..559 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:06:36 Download gff for
BS14984.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arf72A-RA | 145..705 | 8..565 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:50:57 Download gff for
BS14984.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arl1-RA | 143..685 | 17..559 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:55 Download gff for
BS14984.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arf72A-RA | 145..705 | 8..565 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:09:54 Download gff for
BS14984.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arl1-RA | 143..685 | 17..559 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:09:54 Download gff for
BS14984.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15983376..15983594 | 17..237 | 99 | -> | Plus |
3L | 15983863..15984184 | 238..559 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:50:57 Download gff for
BS14984.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15976476..15976694 | 17..237 | 99 | -> | Plus |
arm_3L | 15976963..15977284 | 238..559 | 100 | | Plus |
BS14984.pep Sequence
Translation from 16 to 558
> BS14984.pep
MGGVLSYFRGLLGSREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGF
NVEQVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSADRDRIG
ISKDELLYMLREEELAGAILVVLANKQDMDGCMTVAEVHHALGLENLKNR
TFQIFKTSATKGEGLDQAMDWLSNTLQSRK*
BS14984.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:29:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arl1-PA | 180 | CG6025-PA | 1..180 | 1..180 | 926 | 100 | Plus |
Arf79F-PJ | 182 | CG8385-PJ | 1..179 | 1..178 | 548 | 57.5 | Plus |
Arf79F-PI | 182 | CG8385-PI | 1..179 | 1..178 | 548 | 57.5 | Plus |
Arf79F-PH | 182 | CG8385-PH | 1..179 | 1..178 | 548 | 57.5 | Plus |
Arf79F-PF | 182 | CG8385-PF | 1..179 | 1..178 | 548 | 57.5 | Plus |