Clone BS14985 Report

Search the DGRC for BS14985

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:149
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptCG2200-RA
Protein status:BS14985.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14985.3prime Sequence

753 bp (711 high quality bases) assembled on 2006-10-13

> BS14985.3prime
ATGGTCTAGAAAGCTTTTATTTCTGCAGCAGGAAGGTGAGATCCGCTAGG
GGTGCTAGCTCCTCGGTGCCACCGTCAGCCTTGAACAGCTTGGCATTGCG
ATCGCCCAGGAGGATGGCCTTCTCGCCCTGAACCCGGACACTGGTGCCCT
CGCGAAGACCCAGCACGGGCAGTCCATGGTATGCGACGAACTCCTCCAGC
CGCTCGTCTCGCGTCTCGCCCTTGTGCCGACTACCCGCCTCCGGATCCAG
ATAGTGCGGATTGATGTTGAAGGGAACGAGGGCGAGTGCCTCAAAGCTCG
GCGGATAGGCCACCGGCATGTCGTTGGTGGTGTGAATGGATCGAGTTGCC
ACATTTGTGCCCGCACTGCTGCCCACGTAAGGCAATCCACGCTGGAGCAC
CAGTTCCCTAATCGGATCGAGCAACTTCATCTCGTAGAGCGAACGCAGCA
GCACAAAGGTGTTGCCGCCGCCCACAAAGATGGCCTGTGCCTCCCGCAAT
GCCTGCTCGCGATCCGGCTTCGTGTGCAGTCCCTCCACATTGAATCCCCA
CGGCTGCAGTGCATCGCGCACGGTGGCAGTGTACTTGTCGTGATCCCGCA
GAGCGTAGGGCACAAAGAGCACGGTCTTCACATTGGCACTCTTGAAGAGA
TCCTCCAGCTGGCCGCGCGCATGCTCCAAGTATCCATGGCCGTGCAAACG
CGACGAGGATAGCAACAATAGGTTCCGTGCACTGGCCATGTCGACTGATA
ACT

BS14985.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:38:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG2200-PA 723 CG2200-RA 1..723 739..17 3615 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:55:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG2200-RB 1224 CG2200-RB 275..997 739..17 3615 100 Minus
CG2200-RA 1055 CG2200-RA 106..828 739..17 3615 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:54:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13094771..13095333 640..78 2815 100 Minus
X 23542271 X 13094573..13094673 739..639 505 100 Minus
X 23542271 X 13095445..13095505 77..17 305 100 Minus
Blast to na_te.dros performed on 2015-02-11 15:54:59 has no hits.

BS14985.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:48 Download gff for BS14985.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2200-PA 1..723 17..739 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:23:38 Download gff for BS14985.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2200-RA 103..834 13..742 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:24:46 Download gff for BS14985.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2200-RA 103..834 13..742 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:24:46 Download gff for BS14985.3prime
Subject Subject Range Query Range Percent Splice Strand
X 13094570..13094673 639..742 99 -> Minus
X 13094773..13095333 78..638 100 -> Minus
X 13095445..13095511 13..77 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:23:38 Download gff for BS14985.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12988603..12988706 639..742 99 -> Minus
arm_X 12988806..12989366 78..638 100 -> Minus
arm_X 12989478..12989544 13..77 97   Minus

BS14985.5prime Sequence

753 bp (730 high quality bases) assembled on 2006-10-13

> BS14985.5prime
GAAGTTATCAGTCGACATGGCCAGTGCACGGAACCTATTGTTGCTATCCT
CGTCGCGTTTGCACGGCCATGGATACTTGGAGCATGCGCGCGGCCAGCTG
GAGGATCTCTTCAAGAGTGCCAATGTGAAGACCGTGCTCTTTGTGCCCTA
CGCTCTGCGGGATCACGACAAGTACACTGCCACCGTGCGCGATGCACTGC
AGCCGTGGGGATTCAATGTGGAGGGACTGCACACGAAGCCGGATCGCGAG
CAGGCATTGCGGGAGGCACAGGCCATCTTTGTGGGCGGCGGCAACACCTT
TGTGCTGCTGCGTTCGCTCTACGAGATGAAGTTGCTCGATCCGATTAGGG
AACTGGTGCTCCAGCGTGGATTGCCTTACGTGGGCAGCAGTGCGGGCACA
AATGTGGCAACTCGATCCATTCACACCACCAACGACATGCCGGTGGCCTA
TCCGCCGAGCTTTGAGGCACTCGCCCTCGTTCCCTTCAACATCAATCCGC
ACTATCTGGATCCGGAGGCGGGTAGTCGGCACAAGGGCGAGACGCGAGAC
GAGCGGCTGGAGGAGTTCGTCGCATACCATGGACTGCCCGTGCTGGGTCT
TCGCGAGGGCACCAGTGTCCGGGTTCAGGGCGAGAAGGCCATCCTCCTGN
GCGATCGCAATGCCAAGCTGTTCAAGGCTGACGGTGGCACCGAGGAGCTA
GCACCCCTAGCGGATCTCACCTTCCTGCTGCAGAAATAAAAGCTTTCTAG
ACC

BS14985.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG2200-PA 723 CG2200-RA 1..723 17..739 3596 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:43:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG2200-RB 1224 CG2200-RB 275..997 17..739 3604 99.9 Plus
CG2200-RA 1055 CG2200-RA 106..828 17..739 3604 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:43:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13094771..13095333 116..678 2804 99.8 Plus
X 23542271 X 13094573..13094673 17..117 505 100 Plus
X 23542271 X 13095445..13095505 679..739 305 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:43:10 has no hits.

BS14985.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:49 Download gff for BS14985.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2200-PA 1..723 17..739 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:41:55 Download gff for BS14985.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2200-RA 103..834 14..743 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:15:27 Download gff for BS14985.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2200-RA 103..834 14..743 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:15:27 Download gff for BS14985.5prime
Subject Subject Range Query Range Percent Splice Strand
X 13094570..13094673 14..117 99 -> Plus
X 13094773..13095333 118..678 99 -> Plus
X 13095445..13095511 679..743 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:41:55 Download gff for BS14985.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12988603..12988706 14..117 99 -> Plus
arm_X 12988806..12989366 118..678 99 -> Plus
arm_X 12989478..12989544 679..743 97   Plus

BS14985.complete Sequence

755 bp assembled on 2007-10-17

GenBank Submission: KX800734

> BS14985.complete
GAAGTTATCAGTCGACATGGCCAGTGCACGGAACCTATTGTTGCTATCCT
CGTCGCGTTTGCACGGCCATGGATACTTGGAGCATGCGCGCGGCCAGCTG
GAGGATCTCTTCAAGAGTGCCAATGTGAAGACCGTGCTCTTTGTGCCCTA
CGCTCTGCGGGATCACGACAAGTACACTGCCACCGTGCGCGATGCACTGC
AGCCGTGGGGATTCAATGTGGAGGGACTGCACACGAAGCCGGATCGCGAG
CAGGCATTGCGGGAGGCACAGGCCATCTTTGTGGGCGGCGGCAACACCTT
TGTGCTGCTGCGTTCGCTCTACGAGATGAAGTTGCTCGATCCGATTAGGG
AACTGGTGCTCCAGCGTGGATTGCCTTACGTGGGCAGCAGTGCGGGCACA
AATGTGGCAACTCGATCCATTCACACCACCAACGACATGCCGGTGGCCTA
TCCGCCGAGCTTTGAGGCACTCGCCCTCGTTCCCTTCAACATCAATCCGC
ACTATCTGGATCCGGAGGCGGGTAGTCGGCACAAGGGCGAGACGCGAGAC
GAGCGGCTGGAGGAGTTCGTCGCATACCATGGACTGCCCGTGCTGGGTCT
TCGCGAGGGCACCAGTGTCCGGGTTCAGGGCGAGAAGGCCATCCTCCTGG
GCGATCGCAATGCCAAGCTGTTCAAGGCTGACGGTGGCACCGAGGAGCTA
GCACCCCTAGCGGATCTCACCTTCCTGCTGCAGAAATAAAAGCTTTCTAG
ACCAT

BS14985.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:58:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG2200-RB 723 CG2200-PB 1..723 17..739 3615 100 Plus
CG2200-RA 723 CG2200-PA 1..723 17..739 3615 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:58:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG2200-RB 1224 CG2200-RB 275..997 17..739 3615 100 Plus
CG2200-RA 1055 CG2200-RA 106..828 17..739 3615 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:58:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13094771..13095333 116..678 2815 100 Plus
X 23542271 X 13094573..13094673 17..117 505 100 Plus
X 23542271 X 13095445..13095505 679..739 305 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:58:28 has no hits.

BS14985.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:16:47 Download gff for BS14985.complete
Subject Subject Range Query Range Percent Splice Strand
CG2200-RA 1..723 17..739 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:47:58 Download gff for BS14985.complete
Subject Subject Range Query Range Percent Splice Strand
CG2200-RA 57..788 14..743 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:30:08 Download gff for BS14985.complete
Subject Subject Range Query Range Percent Splice Strand
CG2200-RA 106..820 17..731 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:48:13 Download gff for BS14985.complete
Subject Subject Range Query Range Percent Splice Strand
CG2200-RA 60..774 17..731 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:29 Download gff for BS14985.complete
Subject Subject Range Query Range Percent Splice Strand
CG2200-RA 106..820 17..731 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:29 Download gff for BS14985.complete
Subject Subject Range Query Range Percent Splice Strand
X 13094573..13094673 17..117 100 -> Plus
X 13094773..13095333 118..678 100 -> Plus
X 13095445..13095497 679..731 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:30:08 Download gff for BS14985.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12988606..12988706 17..117 100 -> Plus
arm_X 12988806..12989366 118..678 100 -> Plus
arm_X 12989478..12989530 679..731 100   Plus

BS14985.pep Sequence

Translation from 16 to 738

> BS14985.pep
MASARNLLLLSSSRLHGHGYLEHARGQLEDLFKSANVKTVLFVPYALRDH
DKYTATVRDALQPWGFNVEGLHTKPDREQALREAQAIFVGGGNTFVLLRS
LYEMKLLDPIRELVLQRGLPYVGSSAGTNVATRSIHTTNDMPVAYPPSFE
ALALVPFNINPHYLDPEAGSRHKGETRDERLEEFVAYHGLPVLGLREGTS
VRVQGEKAILLGDRNAKLFKADGGTEELAPLADLTFLLQK*

BS14985.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:18:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG2200-PB 240 CG2200-PB 1..240 1..240 1235 100 Plus
CG2200-PA 240 CG2200-PA 1..240 1..240 1235 100 Plus