Clone Sequence Records
BS14985.3prime Sequence
753 bp (711 high quality bases) assembled on 2006-10-13
> BS14985.3prime
ATGGTCTAGAAAGCTTTTATTTCTGCAGCAGGAAGGTGAGATCCGCTAGG
GGTGCTAGCTCCTCGGTGCCACCGTCAGCCTTGAACAGCTTGGCATTGCG
ATCGCCCAGGAGGATGGCCTTCTCGCCCTGAACCCGGACACTGGTGCCCT
CGCGAAGACCCAGCACGGGCAGTCCATGGTATGCGACGAACTCCTCCAGC
CGCTCGTCTCGCGTCTCGCCCTTGTGCCGACTACCCGCCTCCGGATCCAG
ATAGTGCGGATTGATGTTGAAGGGAACGAGGGCGAGTGCCTCAAAGCTCG
GCGGATAGGCCACCGGCATGTCGTTGGTGGTGTGAATGGATCGAGTTGCC
ACATTTGTGCCCGCACTGCTGCCCACGTAAGGCAATCCACGCTGGAGCAC
CAGTTCCCTAATCGGATCGAGCAACTTCATCTCGTAGAGCGAACGCAGCA
GCACAAAGGTGTTGCCGCCGCCCACAAAGATGGCCTGTGCCTCCCGCAAT
GCCTGCTCGCGATCCGGCTTCGTGTGCAGTCCCTCCACATTGAATCCCCA
CGGCTGCAGTGCATCGCGCACGGTGGCAGTGTACTTGTCGTGATCCCGCA
GAGCGTAGGGCACAAAGAGCACGGTCTTCACATTGGCACTCTTGAAGAGA
TCCTCCAGCTGGCCGCGCGCATGCTCCAAGTATCCATGGCCGTGCAAACG
CGACGAGGATAGCAACAATAGGTTCCGTGCACTGGCCATGTCGACTGATA
ACT
BS14985.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:38:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2200-PA | 723 | CG2200-RA | 1..723 | 739..17 | 3615 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:55:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2200-RB | 1224 | CG2200-RB | 275..997 | 739..17 | 3615 | 100 | Minus |
CG2200-RA | 1055 | CG2200-RA | 106..828 | 739..17 | 3615 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:54:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13094771..13095333 | 640..78 | 2815 | 100 | Minus |
X | 23542271 | X | 13094573..13094673 | 739..639 | 505 | 100 | Minus |
X | 23542271 | X | 13095445..13095505 | 77..17 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:54:59 has no hits.
BS14985.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:48 Download gff for
BS14985.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2200-PA | 1..723 | 17..739 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:23:38 Download gff for
BS14985.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2200-RA | 103..834 | 13..742 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:24:46 Download gff for
BS14985.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2200-RA | 103..834 | 13..742 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:24:46 Download gff for
BS14985.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13094570..13094673 | 639..742 | 99 | -> | Minus |
X | 13094773..13095333 | 78..638 | 100 | -> | Minus |
X | 13095445..13095511 | 13..77 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:23:38 Download gff for
BS14985.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12988603..12988706 | 639..742 | 99 | -> | Minus |
arm_X | 12988806..12989366 | 78..638 | 100 | -> | Minus |
arm_X | 12989478..12989544 | 13..77 | 97 | | Minus |
BS14985.5prime Sequence
753 bp (730 high quality bases) assembled on 2006-10-13
> BS14985.5prime
GAAGTTATCAGTCGACATGGCCAGTGCACGGAACCTATTGTTGCTATCCT
CGTCGCGTTTGCACGGCCATGGATACTTGGAGCATGCGCGCGGCCAGCTG
GAGGATCTCTTCAAGAGTGCCAATGTGAAGACCGTGCTCTTTGTGCCCTA
CGCTCTGCGGGATCACGACAAGTACACTGCCACCGTGCGCGATGCACTGC
AGCCGTGGGGATTCAATGTGGAGGGACTGCACACGAAGCCGGATCGCGAG
CAGGCATTGCGGGAGGCACAGGCCATCTTTGTGGGCGGCGGCAACACCTT
TGTGCTGCTGCGTTCGCTCTACGAGATGAAGTTGCTCGATCCGATTAGGG
AACTGGTGCTCCAGCGTGGATTGCCTTACGTGGGCAGCAGTGCGGGCACA
AATGTGGCAACTCGATCCATTCACACCACCAACGACATGCCGGTGGCCTA
TCCGCCGAGCTTTGAGGCACTCGCCCTCGTTCCCTTCAACATCAATCCGC
ACTATCTGGATCCGGAGGCGGGTAGTCGGCACAAGGGCGAGACGCGAGAC
GAGCGGCTGGAGGAGTTCGTCGCATACCATGGACTGCCCGTGCTGGGTCT
TCGCGAGGGCACCAGTGTCCGGGTTCAGGGCGAGAAGGCCATCCTCCTGN
GCGATCGCAATGCCAAGCTGTTCAAGGCTGACGGTGGCACCGAGGAGCTA
GCACCCCTAGCGGATCTCACCTTCCTGCTGCAGAAATAAAAGCTTTCTAG
ACC
BS14985.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:38:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2200-PA | 723 | CG2200-RA | 1..723 | 17..739 | 3596 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:43:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2200-RB | 1224 | CG2200-RB | 275..997 | 17..739 | 3604 | 99.9 | Plus |
CG2200-RA | 1055 | CG2200-RA | 106..828 | 17..739 | 3604 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:43:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13094771..13095333 | 116..678 | 2804 | 99.8 | Plus |
X | 23542271 | X | 13094573..13094673 | 17..117 | 505 | 100 | Plus |
X | 23542271 | X | 13095445..13095505 | 679..739 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:43:10 has no hits.
BS14985.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:49 Download gff for
BS14985.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2200-PA | 1..723 | 17..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:41:55 Download gff for
BS14985.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2200-RA | 103..834 | 14..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:15:27 Download gff for
BS14985.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2200-RA | 103..834 | 14..743 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:15:27 Download gff for
BS14985.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13094570..13094673 | 14..117 | 99 | -> | Plus |
X | 13094773..13095333 | 118..678 | 99 | -> | Plus |
X | 13095445..13095511 | 679..743 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:41:55 Download gff for
BS14985.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12988603..12988706 | 14..117 | 99 | -> | Plus |
arm_X | 12988806..12989366 | 118..678 | 99 | -> | Plus |
arm_X | 12989478..12989544 | 679..743 | 97 | | Plus |
BS14985.complete Sequence
755 bp assembled on 2007-10-17
GenBank Submission: KX800734
> BS14985.complete
GAAGTTATCAGTCGACATGGCCAGTGCACGGAACCTATTGTTGCTATCCT
CGTCGCGTTTGCACGGCCATGGATACTTGGAGCATGCGCGCGGCCAGCTG
GAGGATCTCTTCAAGAGTGCCAATGTGAAGACCGTGCTCTTTGTGCCCTA
CGCTCTGCGGGATCACGACAAGTACACTGCCACCGTGCGCGATGCACTGC
AGCCGTGGGGATTCAATGTGGAGGGACTGCACACGAAGCCGGATCGCGAG
CAGGCATTGCGGGAGGCACAGGCCATCTTTGTGGGCGGCGGCAACACCTT
TGTGCTGCTGCGTTCGCTCTACGAGATGAAGTTGCTCGATCCGATTAGGG
AACTGGTGCTCCAGCGTGGATTGCCTTACGTGGGCAGCAGTGCGGGCACA
AATGTGGCAACTCGATCCATTCACACCACCAACGACATGCCGGTGGCCTA
TCCGCCGAGCTTTGAGGCACTCGCCCTCGTTCCCTTCAACATCAATCCGC
ACTATCTGGATCCGGAGGCGGGTAGTCGGCACAAGGGCGAGACGCGAGAC
GAGCGGCTGGAGGAGTTCGTCGCATACCATGGACTGCCCGTGCTGGGTCT
TCGCGAGGGCACCAGTGTCCGGGTTCAGGGCGAGAAGGCCATCCTCCTGG
GCGATCGCAATGCCAAGCTGTTCAAGGCTGACGGTGGCACCGAGGAGCTA
GCACCCCTAGCGGATCTCACCTTCCTGCTGCAGAAATAAAAGCTTTCTAG
ACCAT
BS14985.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:58:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2200-RB | 723 | CG2200-PB | 1..723 | 17..739 | 3615 | 100 | Plus |
CG2200-RA | 723 | CG2200-PA | 1..723 | 17..739 | 3615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:58:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2200-RB | 1224 | CG2200-RB | 275..997 | 17..739 | 3615 | 100 | Plus |
CG2200-RA | 1055 | CG2200-RA | 106..828 | 17..739 | 3615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:58:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13094771..13095333 | 116..678 | 2815 | 100 | Plus |
X | 23542271 | X | 13094573..13094673 | 17..117 | 505 | 100 | Plus |
X | 23542271 | X | 13095445..13095505 | 679..739 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:58:28 has no hits.
BS14985.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:16:47 Download gff for
BS14985.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2200-RA | 1..723 | 17..739 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:47:58 Download gff for
BS14985.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2200-RA | 57..788 | 14..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:30:08 Download gff for
BS14985.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2200-RA | 106..820 | 17..731 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:48:13 Download gff for
BS14985.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2200-RA | 60..774 | 17..731 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:29 Download gff for
BS14985.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2200-RA | 106..820 | 17..731 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:29 Download gff for
BS14985.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13094573..13094673 | 17..117 | 100 | -> | Plus |
X | 13094773..13095333 | 118..678 | 100 | -> | Plus |
X | 13095445..13095497 | 679..731 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:30:08 Download gff for
BS14985.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12988606..12988706 | 17..117 | 100 | -> | Plus |
arm_X | 12988806..12989366 | 118..678 | 100 | -> | Plus |
arm_X | 12989478..12989530 | 679..731 | 100 | | Plus |
BS14985.pep Sequence
Translation from 16 to 738
> BS14985.pep
MASARNLLLLSSSRLHGHGYLEHARGQLEDLFKSANVKTVLFVPYALRDH
DKYTATVRDALQPWGFNVEGLHTKPDREQALREAQAIFVGGGNTFVLLRS
LYEMKLLDPIRELVLQRGLPYVGSSAGTNVATRSIHTTNDMPVAYPPSFE
ALALVPFNINPHYLDPEAGSRHKGETRDERLEEFVAYHGLPVLGLREGTS
VRVQGEKAILLGDRNAKLFKADGGTEELAPLADLTFLLQK*
BS14985.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:18:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2200-PB | 240 | CG2200-PB | 1..240 | 1..240 | 1235 | 100 | Plus |
CG2200-PA | 240 | CG2200-PA | 1..240 | 1..240 | 1235 | 100 | Plus |