Clone Sequence Records
BS14987.3prime Sequence
471 bp (471 high quality bases) assembled on 2006-10-13
> BS14987.3prime
ATGGTCTAGAAAGCTTTTAGACTTGGGGAATGCTCTCGGGTCCCTTGGAG
AGCACAGCCTTCATGGTCTTCATCATGCCGGGAATGAGGCCCACATGCTT
GTCCACACACTGGATGGCACAGCGCTCGAATTGGTCGGTGTACTTGGCTA
TCTGATCCTCATTGGGACTGGGCGGCATTTTCACCTTCACATCGTCGTTG
CATTGCATGACGCAACGTTGAAGTCTGCCCTGGAACTCGCCCAATTCGTG
TTGAACGTAGTTCTGTGCCCTCGTCATGGGCGCGGAGCATCGATCCACAC
ATCTCTGAACACTGTCCACGCTGGAGGTTCCATCCTGGCAGCACTTGGCC
GCACACAAGTGCATCTCATTCTGCATTTTGCGTAGGTGCGTCTTGTCCAT
GTCGTCGATCATCTCCGTTACCGCGGCCTCGATTTTCTGGCGCTGTTGCT
GGATCATGTCGACTGATAACT
BS14987.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:55:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5323-PA | 441 | CG5323-RA | 1..441 | 457..17 | 2155 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:44:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5323-RA | 783 | CG5323-RA | 102..542 | 457..17 | 2175 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:44:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18615569..18615758 | 206..17 | 950 | 100 | Minus |
2R | 25286936 | 2R | 18615305..18615472 | 373..206 | 825 | 99.4 | Minus |
2R | 25286936 | 2R | 18615161..18615247 | 457..371 | 420 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-02 17:44:15 has no hits.
BS14987.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:50 Download gff for
BS14987.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5323-PA | 1..441 | 17..457 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:39:22 Download gff for
BS14987.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5323-RA | 96..544 | 12..464 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:11:01 Download gff for
BS14987.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5323-RA | 96..544 | 12..464 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:01 Download gff for
BS14987.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18615155..18615247 | 371..464 | 95 | -> | Minus |
2R | 18615308..18615472 | 206..370 | 99 | -> | Minus |
2R | 18615570..18615760 | 12..205 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:39:22 Download gff for
BS14987.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14502660..14502752 | 371..464 | 95 | -> | Minus |
arm_2R | 14502813..14502977 | 206..370 | 99 | -> | Minus |
arm_2R | 14503075..14503265 | 12..205 | 98 | | Minus |
BS14987.5prime Sequence
471 bp (471 high quality bases) assembled on 2006-10-13
> BS14987.5prime
GAAGTTATCAGTCGACATGATCCAGCAACAGCGCCAGAAAATCGAGGCCG
CGGTAACGGAGATGATCGACGACATGGACAAGACGCACCTACGCAAAATG
CAGAATGAGATGCACTTGTGTGCGGCCAAGTGCTGCCAGGATGGAACCTC
CAGCGTGGACAGTGTTCAGAGATGTGTGGATCGATGCTCCGCGCCCATGA
CGAGGGCACAGAACTACGTTCAACACGAATTGGGCGAGTTCCAGGGCAGA
CTTCAACGTTGCGTCATGCAATGCAACGACGATGTGAAGGTGAAAATGCC
GCCCAGTCCCAATGAGGATCAGATAGCCAAGTACACCGACCAATTCGAGC
GCTGTGCCATCCAGTGTGTGGACAAGCATGTGGGCCTCATTCCCGGCATG
ATGAAGACCATGAAGGCTGTGCTCTCCAAGGGACCCGAGAGCATTCCCCA
AGTCTAAAAGCTTTCTAGACC
BS14987.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:55:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5323-PA | 441 | CG5323-RA | 1..441 | 17..457 | 2155 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:01:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5323-RA | 783 | CG5323-RA | 102..542 | 17..457 | 2175 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:01:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18615569..18615758 | 268..457 | 950 | 100 | Plus |
2R | 25286936 | 2R | 18615305..18615472 | 101..268 | 825 | 99.4 | Plus |
2R | 25286936 | 2R | 18615161..18615247 | 17..103 | 420 | 98.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:01:24 has no hits.
BS14987.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:50 Download gff for
BS14987.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5323-PA | 1..441 | 17..457 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:42:59 Download gff for
BS14987.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5323-RA | 96..544 | 10..462 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:41:02 Download gff for
BS14987.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5323-RA | 96..544 | 10..462 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:41:02 Download gff for
BS14987.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18615570..18615760 | 269..462 | 98 | | Plus |
2R | 18615155..18615247 | 10..103 | 95 | -> | Plus |
2R | 18615308..18615472 | 104..268 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:42:59 Download gff for
BS14987.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14502660..14502752 | 10..103 | 95 | -> | Plus |
arm_2R | 14502813..14502977 | 104..268 | 99 | -> | Plus |
arm_2R | 14503075..14503265 | 269..462 | 98 | | Plus |
BS14987.complete Sequence
473 bp assembled on 2006-11-01
GenBank Submission: FJ637849
> BS14987.complete
GAAGTTATCAGTCGACATGATCCAGCAACAGCGCCAGAAAATCGAGGCCG
CGGTAACGGAGATGATCGACGACATGGACAAGACGCACCTACGCAAAATG
CAGAATGAGATGCACTTGTGTGCGGCCAAGTGCTGCCAGGATGGAACCTC
CAGCGTGGACAGTGTTCAGAGATGTGTGGATCGATGCTCCGCGCCCATGA
CGAGGGCACAGAACTACGTTCAACACGAATTGGGCGAGTTCCAGGGCAGA
CTTCAACGTTGCGTCATGCAATGCAACGACGATGTGAAGGTGAAAATGCC
GCCCAGTCCCAATGAGGATCAGATAGCCAAGTACACCGACCAATTCGAGC
GCTGTGCCATCCAGTGTGTGGACAAGCATGTGGGCCTCATTCCCGGCATG
ATGAAGACCATGAAGGCTGTGCTCTCCAAGGGACCCGAGAGCATTCCCCA
AGTCTAAAAGCTTTCTAGACCAT
BS14987.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:55:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5323-RA | 441 | CG5323-PA | 1..441 | 17..457 | 2175 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:55:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5323-RA | 783 | CG5323-RA | 102..542 | 17..457 | 2175 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:55:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18615569..18615758 | 268..457 | 950 | 100 | Plus |
2R | 25286936 | 2R | 18615305..18615472 | 101..268 | 825 | 99.4 | Plus |
2R | 25286936 | 2R | 18615161..18615247 | 17..103 | 420 | 98.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:55:30 has no hits.
BS14987.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:56 Download gff for
BS14987.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5323-RA | 1..441 | 17..457 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:06:37 Download gff for
BS14987.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5323-RA | 75..523 | 10..462 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:49 Download gff for
BS14987.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5323-RA | 102..540 | 17..455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:56 Download gff for
BS14987.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5323-RA | 75..523 | 10..462 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:12 Download gff for
BS14987.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5323-RA | 102..540 | 17..455 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:30:12 Download gff for
BS14987.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18615161..18615247 | 17..103 | 98 | -> | Plus |
2R | 18615308..18615472 | 104..268 | 99 | -> | Plus |
2R | 18615570..18615756 | 269..455 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:49 Download gff for
BS14987.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14503075..14503261 | 269..455 | 100 | | Plus |
arm_2R | 14502666..14502752 | 17..103 | 98 | -> | Plus |
arm_2R | 14502813..14502977 | 104..268 | 99 | -> | Plus |
BS14987.pep Sequence
Translation from 16 to 456
> BS14987.pep
MIQQQRQKIEAAVTEMIDDMDKTHLRKMQNEMHLCAAKCCQDGTSSVDSV
QRCVDRCSAPMTRAQNYVQHELGEFQGRLQRCVMQCNDDVKVKMPPSPNE
DQIAKYTDQFERCAIQCVDKHVGLIPGMMKTMKAVLSKGPESIPQV*
BS14987.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:29:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5323-PA | 146 | CG5323-PA | 1..146 | 1..146 | 778 | 100 | Plus |
CG5327-PA | 149 | CG5327-PA | 1..140 | 1..140 | 424 | 47.1 | Plus |
CG12661-PB | 131 | CG12661-PB | 8..130 | 2..139 | 287 | 34.8 | Plus |
CG12661-PA | 131 | CG12661-PA | 8..130 | 2..139 | 287 | 34.8 | Plus |