Clone BS14987 Report

Search the DGRC for BS14987

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:149
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptCG5323-RA
Protein status:BS14987.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14987.3prime Sequence

471 bp (471 high quality bases) assembled on 2006-10-13

> BS14987.3prime
ATGGTCTAGAAAGCTTTTAGACTTGGGGAATGCTCTCGGGTCCCTTGGAG
AGCACAGCCTTCATGGTCTTCATCATGCCGGGAATGAGGCCCACATGCTT
GTCCACACACTGGATGGCACAGCGCTCGAATTGGTCGGTGTACTTGGCTA
TCTGATCCTCATTGGGACTGGGCGGCATTTTCACCTTCACATCGTCGTTG
CATTGCATGACGCAACGTTGAAGTCTGCCCTGGAACTCGCCCAATTCGTG
TTGAACGTAGTTCTGTGCCCTCGTCATGGGCGCGGAGCATCGATCCACAC
ATCTCTGAACACTGTCCACGCTGGAGGTTCCATCCTGGCAGCACTTGGCC
GCACACAAGTGCATCTCATTCTGCATTTTGCGTAGGTGCGTCTTGTCCAT
GTCGTCGATCATCTCCGTTACCGCGGCCTCGATTTTCTGGCGCTGTTGCT
GGATCATGTCGACTGATAACT

BS14987.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:55:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG5323-PA 441 CG5323-RA 1..441 457..17 2155 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:44:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG5323-RA 783 CG5323-RA 102..542 457..17 2175 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:44:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18615569..18615758 206..17 950 100 Minus
2R 25286936 2R 18615305..18615472 373..206 825 99.4 Minus
2R 25286936 2R 18615161..18615247 457..371 420 98.9 Minus
Blast to na_te.dros performed on 2015-02-02 17:44:15 has no hits.

BS14987.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:50 Download gff for BS14987.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5323-PA 1..441 17..457 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:39:22 Download gff for BS14987.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5323-RA 96..544 12..464 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:11:01 Download gff for BS14987.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5323-RA 96..544 12..464 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:01 Download gff for BS14987.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18615155..18615247 371..464 95 -> Minus
2R 18615308..18615472 206..370 99 -> Minus
2R 18615570..18615760 12..205 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:39:22 Download gff for BS14987.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14502660..14502752 371..464 95 -> Minus
arm_2R 14502813..14502977 206..370 99 -> Minus
arm_2R 14503075..14503265 12..205 98   Minus

BS14987.5prime Sequence

471 bp (471 high quality bases) assembled on 2006-10-13

> BS14987.5prime
GAAGTTATCAGTCGACATGATCCAGCAACAGCGCCAGAAAATCGAGGCCG
CGGTAACGGAGATGATCGACGACATGGACAAGACGCACCTACGCAAAATG
CAGAATGAGATGCACTTGTGTGCGGCCAAGTGCTGCCAGGATGGAACCTC
CAGCGTGGACAGTGTTCAGAGATGTGTGGATCGATGCTCCGCGCCCATGA
CGAGGGCACAGAACTACGTTCAACACGAATTGGGCGAGTTCCAGGGCAGA
CTTCAACGTTGCGTCATGCAATGCAACGACGATGTGAAGGTGAAAATGCC
GCCCAGTCCCAATGAGGATCAGATAGCCAAGTACACCGACCAATTCGAGC
GCTGTGCCATCCAGTGTGTGGACAAGCATGTGGGCCTCATTCCCGGCATG
ATGAAGACCATGAAGGCTGTGCTCTCCAAGGGACCCGAGAGCATTCCCCA
AGTCTAAAAGCTTTCTAGACC

BS14987.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:55:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG5323-PA 441 CG5323-RA 1..441 17..457 2155 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:01:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG5323-RA 783 CG5323-RA 102..542 17..457 2175 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:01:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18615569..18615758 268..457 950 100 Plus
2R 25286936 2R 18615305..18615472 101..268 825 99.4 Plus
2R 25286936 2R 18615161..18615247 17..103 420 98.9 Plus
Blast to na_te.dros performed on 2015-02-12 11:01:24 has no hits.

BS14987.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:50 Download gff for BS14987.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5323-PA 1..441 17..457 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:42:59 Download gff for BS14987.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5323-RA 96..544 10..462 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:41:02 Download gff for BS14987.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5323-RA 96..544 10..462 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:41:02 Download gff for BS14987.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18615570..18615760 269..462 98   Plus
2R 18615155..18615247 10..103 95 -> Plus
2R 18615308..18615472 104..268 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:42:59 Download gff for BS14987.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14502660..14502752 10..103 95 -> Plus
arm_2R 14502813..14502977 104..268 99 -> Plus
arm_2R 14503075..14503265 269..462 98   Plus

BS14987.complete Sequence

473 bp assembled on 2006-11-01

GenBank Submission: FJ637849

> BS14987.complete
GAAGTTATCAGTCGACATGATCCAGCAACAGCGCCAGAAAATCGAGGCCG
CGGTAACGGAGATGATCGACGACATGGACAAGACGCACCTACGCAAAATG
CAGAATGAGATGCACTTGTGTGCGGCCAAGTGCTGCCAGGATGGAACCTC
CAGCGTGGACAGTGTTCAGAGATGTGTGGATCGATGCTCCGCGCCCATGA
CGAGGGCACAGAACTACGTTCAACACGAATTGGGCGAGTTCCAGGGCAGA
CTTCAACGTTGCGTCATGCAATGCAACGACGATGTGAAGGTGAAAATGCC
GCCCAGTCCCAATGAGGATCAGATAGCCAAGTACACCGACCAATTCGAGC
GCTGTGCCATCCAGTGTGTGGACAAGCATGTGGGCCTCATTCCCGGCATG
ATGAAGACCATGAAGGCTGTGCTCTCCAAGGGACCCGAGAGCATTCCCCA
AGTCTAAAAGCTTTCTAGACCAT

BS14987.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:55:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG5323-RA 441 CG5323-PA 1..441 17..457 2175 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:55:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG5323-RA 783 CG5323-RA 102..542 17..457 2175 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:55:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18615569..18615758 268..457 950 100 Plus
2R 25286936 2R 18615305..18615472 101..268 825 99.4 Plus
2R 25286936 2R 18615161..18615247 17..103 420 98.9 Plus
Blast to na_te.dros performed on 2014-11-27 16:55:30 has no hits.

BS14987.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:56 Download gff for BS14987.complete
Subject Subject Range Query Range Percent Splice Strand
CG5323-RA 1..441 17..457 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:06:37 Download gff for BS14987.complete
Subject Subject Range Query Range Percent Splice Strand
CG5323-RA 75..523 10..462 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:49 Download gff for BS14987.complete
Subject Subject Range Query Range Percent Splice Strand
CG5323-RA 102..540 17..455 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:56 Download gff for BS14987.complete
Subject Subject Range Query Range Percent Splice Strand
CG5323-RA 75..523 10..462 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:12 Download gff for BS14987.complete
Subject Subject Range Query Range Percent Splice Strand
CG5323-RA 102..540 17..455 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:30:12 Download gff for BS14987.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18615161..18615247 17..103 98 -> Plus
2R 18615308..18615472 104..268 99 -> Plus
2R 18615570..18615756 269..455 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:49 Download gff for BS14987.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14503075..14503261 269..455 100   Plus
arm_2R 14502666..14502752 17..103 98 -> Plus
arm_2R 14502813..14502977 104..268 99 -> Plus

BS14987.pep Sequence

Translation from 16 to 456

> BS14987.pep
MIQQQRQKIEAAVTEMIDDMDKTHLRKMQNEMHLCAAKCCQDGTSSVDSV
QRCVDRCSAPMTRAQNYVQHELGEFQGRLQRCVMQCNDDVKVKMPPSPNE
DQIAKYTDQFERCAIQCVDKHVGLIPGMMKTMKAVLSKGPESIPQV*

BS14987.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:29:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG5323-PA 146 CG5323-PA 1..146 1..146 778 100 Plus
CG5327-PA 149 CG5327-PA 1..140 1..140 424 47.1 Plus
CG12661-PB 131 CG12661-PB 8..130 2..139 287 34.8 Plus
CG12661-PA 131 CG12661-PA 8..130 2..139 287 34.8 Plus