Clone Sequence Records
BS14990.3prime Sequence
738 bp (686 high quality bases) assembled on 2006-10-13
> BS14990.3prime
ATGGTCTAGAAAGCTTCTATTCGGTTGCAGGAACAGCCGGCTCCTCCTGC
TGGTCCTTTTCCTTGCTGGACAGACCGCGTATGCTGACATCGTAGACGAC
CTCCTCGATCTTCTTGACATCATACTTTAAGGCATCGAAGCGCTTTCGCA
AGCCATCGTTCTTCAGGTTCAGCAGACGGAAGCCCGTGTTCAGGTCACCA
ATAAAATGGGAGATATTCAGGGGACGCTCGTAGTCGCCCATGGTGACGGA
ATTGGTAGCGAATCGGGAGAGCTCCGACGCCAACTGCAGTATGCCCAGTA
GATAGTCCTCCACATCCAGATGGAAGCCCTCAGACTGGCTGATCTTCAAT
CCCAGCATTTCGGCCACTGTTTCGCGGGTGACCAAGAAGCCCGCCTCCAG
GTAAATAACCAAGGCAATGATGAAGATCAAACGCTGCGTAATGAAGGTCC
AGTGATCGGAGTATCTGTAGTACTGCCCAGCTGGCACCAGTTCGGCCAAT
TTCTGGTACTTTTGGGCACACAGCTCAACCTGTTTGCGGGCTAAGCCGCA
GGCGGCACTAATCTGGCTCAAATCGCTATGAATAATCTGCAGTTTAATCT
GCGCTTCCTTTGACAAATGCTCGATTTCGCGCACCACAATGCGAATGTTC
TCCCTGACTTCCTGTTCATTGTCTATGTACTTTTGGTAGTTGGAGAAGAT
GTCCAAGTTCACGAAGTTCGACATGTCGACTGATAACT
BS14990.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:55:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11761-PA | 708 | translin-RA | 1..708 | 724..17 | 3515 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:23:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
trsn-RA | 864 | CG11761-RA | 74..781 | 724..17 | 3525 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:23:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10479094..10479425 | 17..348 | 1660 | 100 | Plus |
2R | 25286936 | 2R | 10479482..10479600 | 349..467 | 595 | 100 | Plus |
2R | 25286936 | 2R | 10479660..10479756 | 465..561 | 485 | 100 | Plus |
2R | 25286936 | 2R | 10479823..10479912 | 562..651 | 435 | 98.9 | Plus |
2R | 25286936 | 2R | 10479964..10480038 | 650..724 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:23:09 has no hits.
BS14990.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:51 Download gff for
BS14990.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11761-PA | 1..708 | 17..724 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:21:04 Download gff for
BS14990.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
trsn-RA | 67..784 | 10..731 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:09:11 Download gff for
BS14990.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
trsn-RA | 67..784 | 10..731 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:09:11 Download gff for
BS14990.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10479091..10479425 | 10..348 | 98 | <- | Plus |
2R | 10479482..10479597 | 349..464 | 100 | <- | Plus |
2R | 10479660..10479756 | 465..561 | 100 | <- | Plus |
2R | 10479823..10479910 | 562..649 | 98 | <- | Plus |
2R | 10479964..10480045 | 650..731 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:21:04 Download gff for
BS14990.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6366987..6367102 | 349..464 | 100 | <- | Plus |
arm_2R | 6367165..6367261 | 465..561 | 100 | <- | Plus |
arm_2R | 6367328..6367415 | 562..649 | 98 | <- | Plus |
arm_2R | 6367469..6367550 | 650..731 | 95 | | Plus |
arm_2R | 6366596..6366930 | 10..348 | 98 | <- | Plus |
BS14990.5prime Sequence
738 bp (738 high quality bases) assembled on 2006-10-13
> BS14990.5prime
GAAGTTATCAGTCGACATGTCGAACTTCGTGAACTTGGACATCTTCTCCA
ACTACCAAAAGTACATAGACAATGAACAGGAAGTCAGGGAGAACATTCGC
ATTGTGGTGCGCGAAATCGAGCATTTGTCAAAGGAAGCGCAGATTAAACT
GCAGATTATTCATAGCGATTTGAGCCAGATTAGTGCCGCCTGCGGCTTAG
CCCGCAAACAGGTTGAGCTGTGTGCCCAAAAGTACCAGAAATTGGCCGAA
CTGGTGCCAGCTGGGCAGTACTACAGATACTCCGATCACTGGACCTTCAT
TACGCAGCGTTTGATCTTCATCATTGCCTTGGTTATTTACCTGGAGGCGG
GCTTCTTGGTCACCCGCGAAACAGTGGCCGAAATGCTGGGATTGAAGATC
AGCCAGTCTGAGGGCTTCCATCTGGATGTGGAGGACTATCTACTGGGCAT
ACTGCAGTTGGCGTCGGAGCTCTCCCGATTCGCTACCAATTCCGTCACCA
TGGGCGACTACGAGCGTCCCCTGAATATCTCCCATTTTATTGGTGACCTG
AACACGGGCTTCCGTCTGCTGAACCTGAAGAACGATGGCTTGCGAAAGCG
CTTCGATGCCTTAAAGTATGATGTCAAGAAGATCGAGGAGGTCGTCTACG
ATGTCAGCATACGCGGTCTGTCCAGCAAGGAAAAGGACCAGCAGGAGGAG
CCGGCTGTTCCTGCAACCGAATAGAAGCTTTCTAGACC
BS14990.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:55:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11761-PA | 708 | translin-RA | 1..708 | 17..724 | 3515 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:29:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
trsn-RA | 864 | CG11761-RA | 74..781 | 17..724 | 3525 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:29:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10479094..10479425 | 724..393 | 1660 | 100 | Minus |
2R | 25286936 | 2R | 10479482..10479600 | 392..274 | 595 | 100 | Minus |
2R | 25286936 | 2R | 10479660..10479756 | 276..180 | 485 | 100 | Minus |
2R | 25286936 | 2R | 10479823..10479912 | 179..90 | 435 | 98.9 | Minus |
2R | 25286936 | 2R | 10479964..10480038 | 91..17 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:29:48 has no hits.
BS14990.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:52 Download gff for
BS14990.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11761-PA | 1..708 | 17..724 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:17:02 Download gff for
BS14990.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
trsn-RA | 67..784 | 10..731 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:02:22 Download gff for
BS14990.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
trsn-RA | 67..784 | 10..731 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:02:22 Download gff for
BS14990.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10479482..10479597 | 277..392 | 100 | <- | Minus |
2R | 10479660..10479756 | 180..276 | 100 | <- | Minus |
2R | 10479823..10479910 | 92..179 | 98 | <- | Minus |
2R | 10479964..10480045 | 10..91 | 95 | | Minus |
2R | 10479091..10479425 | 393..731 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:17:02 Download gff for
BS14990.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6366596..6366930 | 393..731 | 98 | <- | Minus |
arm_2R | 6366987..6367102 | 277..392 | 100 | <- | Minus |
arm_2R | 6367165..6367261 | 180..276 | 100 | <- | Minus |
arm_2R | 6367328..6367415 | 92..179 | 98 | <- | Minus |
arm_2R | 6367469..6367550 | 10..91 | 95 | | Minus |
BS14990.complete Sequence
740 bp assembled on 2006-11-01
GenBank Submission: FJ637850
> BS14990.complete
GAAGTTATCAGTCGACATGTCGAACTTCGTGAACTTGGACATCTTCTCCA
ACTACCAAAAGTACATAGACAATGAACAGGAAGTCAGGGAGAACATTCGC
ATTGTGGTGCGCGAAATCGAGCATTTGTCAAAGGAAGCGCAGATTAAACT
GCAGATTATTCATAGCGATTTGAGCCAGATTAGTGCCGCCTGCGGCTTAG
CCCGCAAACAGGTTGAGCTGTGTGCCCAAAAGTACCAGAAATTGGCCGAA
CTGGTGCCAGCTGGGCAGTACTACAGATACTCCGATCACTGGACCTTCAT
TACGCAGCGTTTGATCTTCATCATTGCCTTGGTTATTTACCTGGAGGCGG
GCTTCTTGGTCACCCGCGAAACAGTGGCCGAAATGCTGGGATTGAAGATC
AGCCAGTCTGAGGGCTTCCATCTGGATGTGGAGGACTATCTACTGGGCAT
ACTGCAGTTGGCGTCGGAGCTCTCCCGATTCGCTACCAATTCCGTCACCA
TGGGCGACTACGAGCGTCCCCTGAATATCTCCCATTTTATTGGTGACCTG
AACACGGGCTTCCGTCTGCTGAACCTGAAGAACGATGGCTTGCGAAAGCG
CTTCGATGCCTTAAAGTATGATGTCAAGAAGATCGAGGAGGTCGTCTACG
ATGTCAGCATACGCGGTCTGTCCAGCAAGGAAAAGGACCAGCAGGAGGAG
CCGGCTGTTCCTGCAACCGAATAGAAGCTTTCTAGACCAT
BS14990.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:31:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
trsn-RA | 708 | CG11761-PA | 1..708 | 17..724 | 3525 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
trsn-RA | 864 | CG11761-RA | 74..781 | 17..724 | 3525 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10479094..10479425 | 724..393 | 1660 | 100 | Minus |
2R | 25286936 | 2R | 10479482..10479600 | 392..274 | 595 | 100 | Minus |
2R | 25286936 | 2R | 10479660..10479756 | 276..180 | 485 | 100 | Minus |
2R | 25286936 | 2R | 10479823..10479912 | 179..90 | 435 | 98.9 | Minus |
2R | 25286936 | 2R | 10479964..10480038 | 91..17 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:31:25 has no hits.
BS14990.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:57 Download gff for
BS14990.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
trsn-RA | 1..708 | 17..724 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:06:39 Download gff for
BS14990.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
trsn-RA | 63..780 | 10..731 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:29:24 Download gff for
BS14990.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
trsn-RA | 74..781 | 17..724 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:58 Download gff for
BS14990.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
trsn-RA | 63..780 | 10..731 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:47:17 Download gff for
BS14990.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
trsn-RA | 74..781 | 17..724 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:47:17 Download gff for
BS14990.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10479964..10480038 | 17..91 | 100 | | Minus |
2R | 10479094..10479425 | 393..724 | 100 | <- | Minus |
2R | 10479482..10479597 | 277..392 | 100 | <- | Minus |
2R | 10479660..10479756 | 180..276 | 100 | <- | Minus |
2R | 10479823..10479910 | 92..179 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:29:24 Download gff for
BS14990.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6366599..6366930 | 393..724 | 100 | <- | Minus |
arm_2R | 6366987..6367102 | 277..392 | 100 | <- | Minus |
arm_2R | 6367165..6367261 | 180..276 | 100 | <- | Minus |
arm_2R | 6367328..6367415 | 92..179 | 98 | <- | Minus |
arm_2R | 6367469..6367543 | 17..91 | 100 | | Minus |
BS14990.pep Sequence
Translation from 16 to 723
> BS14990.pep
MSNFVNLDIFSNYQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQIIHS
DLSQISAACGLARKQVELCAQKYQKLAELVPAGQYYRYSDHWTFITQRLI
FIIALVIYLEAGFLVTRETVAEMLGLKISQSEGFHLDVEDYLLGILQLAS
ELSRFATNSVTMGDYERPLNISHFIGDLNTGFRLLNLKNDGLRKRFDALK
YDVKKIEEVVYDVSIRGLSSKEKDQQEEPAVPATE*
BS14990.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:29:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
trsn-PA | 235 | CG11761-PA | 1..235 | 1..235 | 1183 | 100 | Plus |