Clone BS14990 Report

Search the DGRC for BS14990

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:149
Well:90
Vector:pDNR-Dual
Associated Gene/Transcripttrsn-RA
Protein status:BS14990.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14990.3prime Sequence

738 bp (686 high quality bases) assembled on 2006-10-13

> BS14990.3prime
ATGGTCTAGAAAGCTTCTATTCGGTTGCAGGAACAGCCGGCTCCTCCTGC
TGGTCCTTTTCCTTGCTGGACAGACCGCGTATGCTGACATCGTAGACGAC
CTCCTCGATCTTCTTGACATCATACTTTAAGGCATCGAAGCGCTTTCGCA
AGCCATCGTTCTTCAGGTTCAGCAGACGGAAGCCCGTGTTCAGGTCACCA
ATAAAATGGGAGATATTCAGGGGACGCTCGTAGTCGCCCATGGTGACGGA
ATTGGTAGCGAATCGGGAGAGCTCCGACGCCAACTGCAGTATGCCCAGTA
GATAGTCCTCCACATCCAGATGGAAGCCCTCAGACTGGCTGATCTTCAAT
CCCAGCATTTCGGCCACTGTTTCGCGGGTGACCAAGAAGCCCGCCTCCAG
GTAAATAACCAAGGCAATGATGAAGATCAAACGCTGCGTAATGAAGGTCC
AGTGATCGGAGTATCTGTAGTACTGCCCAGCTGGCACCAGTTCGGCCAAT
TTCTGGTACTTTTGGGCACACAGCTCAACCTGTTTGCGGGCTAAGCCGCA
GGCGGCACTAATCTGGCTCAAATCGCTATGAATAATCTGCAGTTTAATCT
GCGCTTCCTTTGACAAATGCTCGATTTCGCGCACCACAATGCGAATGTTC
TCCCTGACTTCCTGTTCATTGTCTATGTACTTTTGGTAGTTGGAGAAGAT
GTCCAAGTTCACGAAGTTCGACATGTCGACTGATAACT

BS14990.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:55:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG11761-PA 708 translin-RA 1..708 724..17 3515 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:23:12
Subject Length Description Subject Range Query Range Score Percent Strand
trsn-RA 864 CG11761-RA 74..781 724..17 3525 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:23:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10479094..10479425 17..348 1660 100 Plus
2R 25286936 2R 10479482..10479600 349..467 595 100 Plus
2R 25286936 2R 10479660..10479756 465..561 485 100 Plus
2R 25286936 2R 10479823..10479912 562..651 435 98.9 Plus
2R 25286936 2R 10479964..10480038 650..724 375 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:23:09 has no hits.

BS14990.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:51 Download gff for BS14990.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11761-PA 1..708 17..724 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:21:04 Download gff for BS14990.3prime
Subject Subject Range Query Range Percent Splice Strand
trsn-RA 67..784 10..731 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:09:11 Download gff for BS14990.3prime
Subject Subject Range Query Range Percent Splice Strand
trsn-RA 67..784 10..731 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:09:11 Download gff for BS14990.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10479091..10479425 10..348 98 <- Plus
2R 10479482..10479597 349..464 100 <- Plus
2R 10479660..10479756 465..561 100 <- Plus
2R 10479823..10479910 562..649 98 <- Plus
2R 10479964..10480045 650..731 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:21:04 Download gff for BS14990.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6366987..6367102 349..464 100 <- Plus
arm_2R 6367165..6367261 465..561 100 <- Plus
arm_2R 6367328..6367415 562..649 98 <- Plus
arm_2R 6367469..6367550 650..731 95   Plus
arm_2R 6366596..6366930 10..348 98 <- Plus

BS14990.5prime Sequence

738 bp (738 high quality bases) assembled on 2006-10-13

> BS14990.5prime
GAAGTTATCAGTCGACATGTCGAACTTCGTGAACTTGGACATCTTCTCCA
ACTACCAAAAGTACATAGACAATGAACAGGAAGTCAGGGAGAACATTCGC
ATTGTGGTGCGCGAAATCGAGCATTTGTCAAAGGAAGCGCAGATTAAACT
GCAGATTATTCATAGCGATTTGAGCCAGATTAGTGCCGCCTGCGGCTTAG
CCCGCAAACAGGTTGAGCTGTGTGCCCAAAAGTACCAGAAATTGGCCGAA
CTGGTGCCAGCTGGGCAGTACTACAGATACTCCGATCACTGGACCTTCAT
TACGCAGCGTTTGATCTTCATCATTGCCTTGGTTATTTACCTGGAGGCGG
GCTTCTTGGTCACCCGCGAAACAGTGGCCGAAATGCTGGGATTGAAGATC
AGCCAGTCTGAGGGCTTCCATCTGGATGTGGAGGACTATCTACTGGGCAT
ACTGCAGTTGGCGTCGGAGCTCTCCCGATTCGCTACCAATTCCGTCACCA
TGGGCGACTACGAGCGTCCCCTGAATATCTCCCATTTTATTGGTGACCTG
AACACGGGCTTCCGTCTGCTGAACCTGAAGAACGATGGCTTGCGAAAGCG
CTTCGATGCCTTAAAGTATGATGTCAAGAAGATCGAGGAGGTCGTCTACG
ATGTCAGCATACGCGGTCTGTCCAGCAAGGAAAAGGACCAGCAGGAGGAG
CCGGCTGTTCCTGCAACCGAATAGAAGCTTTCTAGACC

BS14990.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:55:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG11761-PA 708 translin-RA 1..708 17..724 3515 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:29:52
Subject Length Description Subject Range Query Range Score Percent Strand
trsn-RA 864 CG11761-RA 74..781 17..724 3525 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:29:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10479094..10479425 724..393 1660 100 Minus
2R 25286936 2R 10479482..10479600 392..274 595 100 Minus
2R 25286936 2R 10479660..10479756 276..180 485 100 Minus
2R 25286936 2R 10479823..10479912 179..90 435 98.9 Minus
2R 25286936 2R 10479964..10480038 91..17 375 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:29:48 has no hits.

BS14990.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:52 Download gff for BS14990.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11761-PA 1..708 17..724 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:17:02 Download gff for BS14990.5prime
Subject Subject Range Query Range Percent Splice Strand
trsn-RA 67..784 10..731 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:02:22 Download gff for BS14990.5prime
Subject Subject Range Query Range Percent Splice Strand
trsn-RA 67..784 10..731 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:02:22 Download gff for BS14990.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10479482..10479597 277..392 100 <- Minus
2R 10479660..10479756 180..276 100 <- Minus
2R 10479823..10479910 92..179 98 <- Minus
2R 10479964..10480045 10..91 95   Minus
2R 10479091..10479425 393..731 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:17:02 Download gff for BS14990.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6366596..6366930 393..731 98 <- Minus
arm_2R 6366987..6367102 277..392 100 <- Minus
arm_2R 6367165..6367261 180..276 100 <- Minus
arm_2R 6367328..6367415 92..179 98 <- Minus
arm_2R 6367469..6367550 10..91 95   Minus

BS14990.complete Sequence

740 bp assembled on 2006-11-01

GenBank Submission: FJ637850

> BS14990.complete
GAAGTTATCAGTCGACATGTCGAACTTCGTGAACTTGGACATCTTCTCCA
ACTACCAAAAGTACATAGACAATGAACAGGAAGTCAGGGAGAACATTCGC
ATTGTGGTGCGCGAAATCGAGCATTTGTCAAAGGAAGCGCAGATTAAACT
GCAGATTATTCATAGCGATTTGAGCCAGATTAGTGCCGCCTGCGGCTTAG
CCCGCAAACAGGTTGAGCTGTGTGCCCAAAAGTACCAGAAATTGGCCGAA
CTGGTGCCAGCTGGGCAGTACTACAGATACTCCGATCACTGGACCTTCAT
TACGCAGCGTTTGATCTTCATCATTGCCTTGGTTATTTACCTGGAGGCGG
GCTTCTTGGTCACCCGCGAAACAGTGGCCGAAATGCTGGGATTGAAGATC
AGCCAGTCTGAGGGCTTCCATCTGGATGTGGAGGACTATCTACTGGGCAT
ACTGCAGTTGGCGTCGGAGCTCTCCCGATTCGCTACCAATTCCGTCACCA
TGGGCGACTACGAGCGTCCCCTGAATATCTCCCATTTTATTGGTGACCTG
AACACGGGCTTCCGTCTGCTGAACCTGAAGAACGATGGCTTGCGAAAGCG
CTTCGATGCCTTAAAGTATGATGTCAAGAAGATCGAGGAGGTCGTCTACG
ATGTCAGCATACGCGGTCTGTCCAGCAAGGAAAAGGACCAGCAGGAGGAG
CCGGCTGTTCCTGCAACCGAATAGAAGCTTTCTAGACCAT

BS14990.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:31:26
Subject Length Description Subject Range Query Range Score Percent Strand
trsn-RA 708 CG11761-PA 1..708 17..724 3525 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:27
Subject Length Description Subject Range Query Range Score Percent Strand
trsn-RA 864 CG11761-RA 74..781 17..724 3525 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10479094..10479425 724..393 1660 100 Minus
2R 25286936 2R 10479482..10479600 392..274 595 100 Minus
2R 25286936 2R 10479660..10479756 276..180 485 100 Minus
2R 25286936 2R 10479823..10479912 179..90 435 98.9 Minus
2R 25286936 2R 10479964..10480038 91..17 375 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:31:25 has no hits.

BS14990.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:57 Download gff for BS14990.complete
Subject Subject Range Query Range Percent Splice Strand
trsn-RA 1..708 17..724 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:06:39 Download gff for BS14990.complete
Subject Subject Range Query Range Percent Splice Strand
trsn-RA 63..780 10..731 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:29:24 Download gff for BS14990.complete
Subject Subject Range Query Range Percent Splice Strand
trsn-RA 74..781 17..724 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:58 Download gff for BS14990.complete
Subject Subject Range Query Range Percent Splice Strand
trsn-RA 63..780 10..731 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:47:17 Download gff for BS14990.complete
Subject Subject Range Query Range Percent Splice Strand
trsn-RA 74..781 17..724 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:47:17 Download gff for BS14990.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10479964..10480038 17..91 100   Minus
2R 10479094..10479425 393..724 100 <- Minus
2R 10479482..10479597 277..392 100 <- Minus
2R 10479660..10479756 180..276 100 <- Minus
2R 10479823..10479910 92..179 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:29:24 Download gff for BS14990.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6366599..6366930 393..724 100 <- Minus
arm_2R 6366987..6367102 277..392 100 <- Minus
arm_2R 6367165..6367261 180..276 100 <- Minus
arm_2R 6367328..6367415 92..179 98 <- Minus
arm_2R 6367469..6367543 17..91 100   Minus

BS14990.pep Sequence

Translation from 16 to 723

> BS14990.pep
MSNFVNLDIFSNYQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQIIHS
DLSQISAACGLARKQVELCAQKYQKLAELVPAGQYYRYSDHWTFITQRLI
FIIALVIYLEAGFLVTRETVAEMLGLKISQSEGFHLDVEDYLLGILQLAS
ELSRFATNSVTMGDYERPLNISHFIGDLNTGFRLLNLKNDGLRKRFDALK
YDVKKIEEVVYDVSIRGLSSKEKDQQEEPAVPATE*

BS14990.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:29:41
Subject Length Description Subject Range Query Range Score Percent Strand
trsn-PA 235 CG11761-PA 1..235 1..235 1183 100 Plus