Clone Sequence Records
BS14991.3prime Sequence
748 bp (732 high quality bases) assembled on 2006-10-13
> BS14991.3prime
ATGGTCTAGAAAGCTTTTACTTCGTCTCCGCTTCTTCCGCTAGCGCCTTG
CGAGATTTGAATACGCGCACCGTGTTGTCGACACCACCAGATACAATGTA
CTTGGGATTGGACCAGTCGATGTCCAGGACCTTTTCACCGTGACCCAAAA
GATCGTACAGTGGGGCCTTGGGACTCCTGCAGTCCCACAGCTTGTTCTGG
TTGTCATAAGCGCCGGAGACAAATAGGAACTCCTCCGTGGTGGACCACAT
GACGGTCTGCACCCAGGCATTGTGTCCCAGATAGGTATTCCTTACCACTG
ATCCCTGGTTTGTCCTAGGATCATAGAGCCGCAGATTCTTGTCCGCCGAA
GCAGTCAGTATCAGCCGATTCAGCTTTGAGTAGCTCGCATCGAATATGGA
CTTGTTGGTGGATATTTCGGTCTTGATGCCCTCAAGACTCAGATCCCACA
CCTTGAGTGTGTGATCCCAGCTGCCAGTTAGCAGAGTGGTAGCATCCATC
CACTGCACGGCTGATACGCTCTCACGATGTCCCTGCAGCGTAATTTTGGG
GGTTCTCACACCGCTCTCTTTCATCCGCTTTGAGCTGCCCTCGACTGCAT
CGTCCAGCTCTGCTGACCACACCTTCAACATCGTGTCCCAAGAGCCCGTG
GCAAATCTCAGACCATCCGGACTCACGCTGACACTGTCGACGCCTCGCTC
GGGGCCCTTGCACACGGAGACACATTCCACCGAGTTGGAGCCCACGTT
BS14991.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:55:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6724-PA | 1263 | CG6724-RA | 532..1263 | 748..17 | 3610 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:15:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6724-RA | 1535 | CG6724-RA | 751..1482 | 748..17 | 3630 | 99.7 | Minus |
CG6724-RB | 1529 | CG6724-RB | 751..1476 | 748..17 | 3530 | 98.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:15:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10768287..10768576 | 17..306 | 1435 | 99.7 | Plus |
2L | 23513712 | 2L | 10768644..10768890 | 307..553 | 1235 | 100 | Plus |
2L | 23513712 | 2L | 10768948..10769142 | 554..748 | 960 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:15:51 has no hits.
BS14991.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:52 Download gff for
BS14991.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6724-PA | 532..1263 | 17..748 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:40:15 Download gff for
BS14991.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6724-RA | 751..1482 | 17..748 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:55:58 Download gff for
BS14991.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6724-RA | 751..1482 | 17..748 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:55:58 Download gff for
BS14991.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10768287..10768576 | 17..306 | 99 | <- | Plus |
2L | 10768644..10768890 | 307..553 | 100 | <- | Plus |
2L | 10768948..10769142 | 554..748 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:40:15 Download gff for
BS14991.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10768287..10768576 | 17..306 | 99 | <- | Plus |
arm_2L | 10768644..10768890 | 307..553 | 100 | <- | Plus |
arm_2L | 10768948..10769142 | 554..748 | 99 | | Plus |
BS14991.5prime Sequence
794 bp (722 high quality bases) assembled on 2006-10-13
> BS14991.5prime
GAAGTTATCAGTCGACATGGATGTGGATAATGGCGAGGGGCAGGTGCAGG
TGCACCTGAAGACCAAGCAGGAGCATTATGCCGTGCCTGATGTGCCGTAC
GCCATCGATGGCACCGTCACCACCGTGGAACTAAACACATTCGTGAACGC
ACTGTTGCGTCAAAAAGATGGCTCTTCCGACACTGACTTCGACTTCCTGG
TGTTCGATGAGTACCTGCGCGGCCGGCTGTGCGATCACCTGCGCGAGAAA
GCCATCAGTTTCGAGGACGCCATCGAGATCGAGTATGTGGAGCGGTTCCC
GGCGCCAGAGCCACAGGATTGCCTGCTGCACGACGACTGGGTGTCCGCGG
TGAAGGCTAGAGGAAAGTGGATCCTCTCTGGGTGCTACGACAACACCCTG
AATTTGTGGACCAACAAGGGCAAGCACATTCTCACTATTTCTGGTCACAC
GGCGCCCATCAAGGCGGTGGACTGGATATCGCTGGACGAGGAGACGGGAC
GTTTTGTGTCCACATCGCAGGATCAGACCGCCATGCTGTGGCAGTGGAAC
GTGGGCTCCAACTCGGTGGAATGTGTCTCCGTGTGCAAGGGCCACGAGCG
AGGCGTCGACAGTGTCAGCGTGAGTCCGGATGGTCTGAGATTTGCCACGG
GCTCTTGGGACACGATGTTGAAGGTGTGGTCAGCAGAGCTGGACGATGCA
GTCGAGGGCAGCTCAAAGCGGATGAAAGAGAGCGGTGTGAGAACCCCCAA
AATTACGCTGCAGGGACATCGTGAGAGCGTATCACCCGTGCAGT
BS14991.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:55:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6724-PA | 1263 | CG6724-RA | 1..778 | 17..794 | 3640 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:40:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6724-RA | 1535 | CG6724-RA | 220..997 | 17..794 | 3740 | 98.7 | Plus |
CG6724-RB | 1529 | CG6724-RB | 220..991 | 17..794 | 3640 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:40:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10768948..10769613 | 742..77 | 3225 | 98.9 | Minus |
2L | 23513712 | 2L | 10769675..10769733 | 75..17 | 280 | 98.3 | Minus |
2L | 23513712 | 2L | 10768839..10768890 | 794..743 | 245 | 98.1 | Minus |
Blast to na_te.dros performed on 2015-02-08 11:40:19 has no hits.
BS14991.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:53 Download gff for
BS14991.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6724-PA | 1..778 | 17..794 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:35:57 Download gff for
BS14991.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6724-RA | 214..997 | 9..794 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:41:23 Download gff for
BS14991.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6724-RA | 214..997 | 9..794 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:23 Download gff for
BS14991.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10768839..10768890 | 743..794 | 98 | <- | Minus |
2L | 10768948..10769614 | 76..742 | 98 | <- | Minus |
2L | 10769675..10769739 | 9..75 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:35:57 Download gff for
BS14991.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10768839..10768890 | 743..794 | 98 | <- | Minus |
arm_2L | 10768948..10769614 | 76..742 | 98 | <- | Minus |
arm_2L | 10769675..10769739 | 9..75 | 94 | | Minus |
BS14991.complete Sequence
1295 bp assembled on 2006-11-01
GenBank Submission: FJ637851
> BS14991.complete
GAAGTTATCAGTCGACATGGATGTGGATAATGGCGAGGGGCAGGTGCAGG
TGCACCTGAAGACCAAGCAGGAGCATTATGCCGTGCCTGATGTGCCGTAC
GCCATCGATGGCACCGTCACCACCGTGGAACTAAACACATTCGTGAACGC
ACTGTTGCGTCAAAAAGATGGCTCTTCCGACACTGACTTCGACTTCCTGG
TGTTCGATGAGTACCTGCGCGGCCGGCTGTGCGATCACCTGCGCGAGAAA
GCCATCAGTTTCGAGGACGCCATCGAGATCGAGTATGTGGAGCGGTTCCC
GGCGCCAGAGCCACAGGATTGCCTGCTGCACGACGACTGGGTGTCCGCGG
TGAAGGCTAGAGGAAAGTGGATCCTCTCTGGGTGCTACGACAACACCCTG
AATTTGTGGACCAACAAGGGCAAGCACATTCTCACTATTTCTGGTCACAC
GGCGCCCATCAAGGCGGTGGACTGGATATCGCTGGACGAGGAGACGGGAC
GTTTTGTGTCCACATCGCAGGATCAGACCGCCATGCTGTGGCAGTGGAAC
GTGGGCTCCAACTCGGTGGAATGTGTCTCCGTGTGCAAGGGCCACGAGCG
AGGCGTCGACAGTGTCAGCGTGAGTCCGGATGGTCTGAGATTTGCCACGG
GCTCTTGGGACACGATGTTGAAGGTGTGGTCAGCAGAGCTGGACGATGCA
GTCGAGGGCAGCTCAAAGCGGATGAAAGAGAGCGGTGTGAGAACCCCCAA
AATTACGCTGCAGGGACATCGTGAGAGCGTATCAGCCGTGCAGTGGATGG
ATGCTACCACTCTGCTAACTGGCAGCTGGGATCACACACTCAAGGTGTGG
GATCTGAGTCTTGAGGGCATCAAGACCGAAATATCCACCAACAAGTCCAT
ATTCGATGCGAGCTACTCAAAGCTGAATCGGCTGATACTGACTGCTTCGG
CGGACAAGAATCTGCGGCTCTATGATCCTAGGACAAACCAGGGATCAGTG
GTAAGGAATACCTATCTGGGACACAATGCCTGGGTGCAGACCGTCATGTG
GTCCACCACGGAGGAGTTCCTATTTGTCTCCGGCGCTTATGACAACCAGA
ACAAGCTGTGGGACTGCAGGAGTCCCAAGGCCCCACTGTACGATCTTTTG
GGTCACGGTGAAAAGGTCCTGGACATCGACTGGTCCAATCCCAAGTACAT
TGTATCTGGTGGTGTCGACAACACGGTGCGCGTATTCAAATCTCGCAAGG
CGCTAGCGGAAGAAGCGGAGACGAAGTAAAAGCTTTCTAGACCAT
BS14991.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:47:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6724-RA | 1263 | CG6724-PA | 1..1263 | 17..1279 | 6165 | 99.2 | Plus |
CG6724-RB | 1257 | CG6724-PB | 1..1257 | 17..1279 | 6040 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:47:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6724-RA | 1535 | CG6724-RA | 220..1482 | 17..1279 | 6165 | 99.2 | Plus |
CG6724-RB | 1529 | CG6724-RB | 220..1476 | 17..1279 | 6040 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:47:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10768948..10769613 | 742..77 | 3225 | 98.9 | Minus |
2L | 23513712 | 2L | 10768287..10768576 | 1279..990 | 1435 | 99.7 | Minus |
2L | 23513712 | 2L | 10768644..10768890 | 989..743 | 1235 | 100 | Minus |
2L | 23513712 | 2L | 10769675..10769733 | 75..17 | 280 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:47:01 has no hits.
BS14991.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:59 Download gff for
BS14991.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6724-RA | 1..1263 | 17..1279 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:06:40 Download gff for
BS14991.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6724-RA | 226..1494 | 9..1279 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:22:40 Download gff for
BS14991.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6724-RA | 220..1480 | 17..1277 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:59 Download gff for
BS14991.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6724-RA | 226..1494 | 9..1279 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:16:52 Download gff for
BS14991.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6724-RA | 220..1480 | 17..1277 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:16:52 Download gff for
BS14991.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10769675..10769733 | 17..75 | 98 | | Minus |
2L | 10768644..10768890 | 743..989 | 100 | <- | Minus |
2L | 10768289..10768576 | 990..1277 | 99 | <- | Minus |
2L | 10768948..10769614 | 76..742 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:22:40 Download gff for
BS14991.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10768289..10768576 | 990..1277 | 99 | <- | Minus |
arm_2L | 10768644..10768890 | 743..989 | 100 | <- | Minus |
arm_2L | 10768948..10769614 | 76..742 | 98 | <- | Minus |
arm_2L | 10769675..10769733 | 17..75 | 98 | | Minus |
BS14991.pep Sequence
Translation from 16 to 1278
> BS14991.pep
MDVDNGEGQVQVHLKTKQEHYAVPDVPYAIDGTVTTVELNTFVNALLRQK
DGSSDTDFDFLVFDEYLRGRLCDHLREKAISFEDAIEIEYVERFPAPEPQ
DCLLHDDWVSAVKARGKWILSGCYDNTLNLWTNKGKHILTISGHTAPIKA
VDWISLDEETGRFVSTSQDQTAMLWQWNVGSNSVECVSVCKGHERGVDSV
SVSPDGLRFATGSWDTMLKVWSAELDDAVEGSSKRMKESGVRTPKITLQG
HRESVSAVQWMDATTLLTGSWDHTLKVWDLSLEGIKTEISTNKSIFDASY
SKLNRLILTASADKNLRLYDPRTNQGSVVRNTYLGHNAWVQTVMWSTTEE
FLFVSGAYDNQNKLWDCRSPKAPLYDLLGHGEKVLDIDWSNPKYIVSGGV
DNTVRVFKSRKALAEEAETK*
BS14991.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:29:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6724-PA | 420 | CG6724-PA | 1..420 | 1..420 | 2233 | 100 | Plus |
CG6724-PB | 418 | CG6724-PB | 1..418 | 1..420 | 2211 | 99.5 | Plus |
wds-PB | 361 | CG17437-PB | 71..359 | 105..409 | 251 | 28.9 | Plus |
wds-PA | 361 | CG17437-PA | 71..359 | 105..409 | 251 | 28.9 | Plus |
wds-PB | 361 | CG17437-PB | 70..272 | 192..411 | 219 | 29.1 | Plus |
wds-PA | 361 | CG17437-PA | 70..272 | 192..411 | 219 | 29.1 | Plus |
Lis-1-PG | 411 | CG8440-PG | 123..411 | 119..410 | 217 | 25 | Plus |
wds-PB | 361 | CG17437-PB | 63..225 | 243..407 | 154 | 29.8 | Plus |
wds-PA | 361 | CG17437-PA | 63..225 | 243..407 | 154 | 29.8 | Plus |