Clone BS14994 Report

Search the DGRC for BS14994

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:149
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptMED28-RA
Protein status:BS14994.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14994.3prime Sequence

600 bp (600 high quality bases) assembled on 2006-10-13

> BS14994.3prime
ATGGTCTAGAAAGCTTTCATTTGGGTGGCATTTGTCTGCTTATCATGCGG
AGCTGCTGCATCTGCTGTGCCTGCAGCATGTGTGGACTGGGCTGCATGGG
TCCGCCGGGTTGCATTGCACCCGGAGGCATTCCGGGCATCATTCCCGGTC
GCGGCGGTGTACCTCCCATGGGTGGCATTCCGCCACCGGGACCTTGCAGC
ATTCCAGAGCCGATGGGCGGCGTGGGGCGACTGTGTACGCCCTGTTGGAT
GTCCGATAGGCAGGCCTTCCACTCCTCCAGGCGATTGTAGTGCTTCTGCA
GGAGTGCCTCCTTGCGTTGAATCTCGATGCTCAGGTCCTGATTCTCGTCC
TTGATCAGCATGTAGGGCTTCAGCGTGGAGACGAGAAAACGCTTCTGCAG
GAAGAACGCCTCCATTTGGCGGGCGACGTCTATGAAGCGATTTGTGGTCT
TCTGTACCTCCAGATCGATTTCCTCCTTGTTTGTCCCGGAATTCGGCTCC
TGTTTGGTCAGCGTCAGCAGGCACGACTGGAAGGCCTCCTCGAACTCGTC
CATCAGGTTACCGCCGCCGGACTCATTGCTGGCCATGTCGACTGATAACT

BS14994.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:55:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG5121-PA 570 MED28-RA 1..570 586..17 2850 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:40:51
Subject Length Description Subject Range Query Range Score Percent Strand
MED28-RA 743 CG5121-RA 99..671 587..15 2865 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:40:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25477101..25477673 587..15 2865 100 Minus
Blast to na_te.dros performed on 2015-02-08 11:40:46 has no hits.

BS14994.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:55 Download gff for BS14994.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5121-PA 1..570 17..586 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:36:02 Download gff for BS14994.3prime
Subject Subject Range Query Range Percent Splice Strand
MED28-RA 99..671 15..587 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:41:25 Download gff for BS14994.3prime
Subject Subject Range Query Range Percent Splice Strand
MED28-RA 99..671 15..587 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:25 Download gff for BS14994.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25477101..25477673 15..587 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:36:02 Download gff for BS14994.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21302823..21303395 15..587 100   Minus

BS14994.5prime Sequence

600 bp (600 high quality bases) assembled on 2006-10-13

> BS14994.5prime
GAAGTTATCAGTCGACATGGCCAGCAATGAGTCCGGCGGCGGTAACCTGA
TGGACGAGTTCGAGGAGGCCTTCCAGTCGTGCCTGCTGACGCTGACCAAA
CAGGAGCCGAATTCCGGGACAAACAAGGAGGAAATCGATCTGGAGGTACA
GAAGACCACAAATCGCTTCATAGACGTCGCCCGCCAAATGGAGGCGTTCT
TCCTGCAGAAGCGTTTTCTCGTCTCCACGCTGAAGCCCTACATGCTGATC
AAGGACGAGAATCAGGACCTGAGCATCGAGATTCAACGCAAGGAGGCACT
CCTGCAGAAGCACTACAATCGCCTGGAGGAGTGGAAGGCCTGCCTATCGG
ACATCCAACAGGGCGTACACAGTCGCCCCACGCCGCCCATCGGCTCTGGA
ATGCTGCAAGGTCCCGGTGGCGGAATGCCACCCATGGGAGGTACACCGCC
GCGACCGGGAATGATGCCCGGAATGCCTCCGGGTGCAATGCAACCCGGCG
GACCCATGCAGCCCAGTCCACACATGCTGCAGGCACAGCAGATGCAGCAG
CTCCGCATGATAAGCAGACAAATGCCACCCAAATGAAAGCTTTCTAGACC

BS14994.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:55:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG5121-PA 570 MED28-RA 1..570 17..586 2850 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:45:49
Subject Length Description Subject Range Query Range Score Percent Strand
MED28-RA 743 CG5121-RA 99..671 16..588 2865 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:45:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25477101..25477673 16..588 2865 100 Plus
Blast to na_te.dros performed on 2015-02-02 17:45:46 has no hits.

BS14994.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:55 Download gff for BS14994.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5121-PA 1..570 17..586 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:39:33 Download gff for BS14994.5prime
Subject Subject Range Query Range Percent Splice Strand
MED28-RA 99..671 16..588 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:11:10 Download gff for BS14994.5prime
Subject Subject Range Query Range Percent Splice Strand
MED28-RA 99..671 16..588 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:10 Download gff for BS14994.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25477101..25477673 16..588 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:39:33 Download gff for BS14994.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21302823..21303395 16..588 100   Plus

BS14994.complete Sequence

602 bp assembled on 2006-11-01

GenBank Submission: FJ637852

> BS14994.complete
GAAGTTATCAGTCGACATGGCCAGCAATGAGTCCGGCGGCGGTAACCTGA
TGGACGAGTTCGAGGAGGCCTTCCAGTCGTGCCTGCTGACGCTGACCAAA
CAGGAGCCGAATTCCGGGACAAACAAGGAGGAAATCGATCTGGAGGTACA
GAAGACCACAAATCGCTTCATAGACGTCGCCCGCCAAATGGAGGCGTTCT
TCCTGCAGAAGCGTTTTCTCGTCTCCACGCTGAAGCCCTACATGCTGATC
AAGGACGAGAATCAGGACCTGAGCATCGAGATTCAACGCAAGGAGGCACT
CCTGCAGAAGCACTACAATCGCCTGGAGGAGTGGAAGGCCTGCCTATCGG
ACATCCAACAGGGCGTACACAGTCGCCCCACGCCGCCCATCGGCTCTGGA
ATGCTGCAAGGTCCCGGTGGCGGAATGCCACCCATGGGAGGTACACCGCC
GCGACCGGGAATGATGCCCGGAATGCCTCCGGGTGCAATGCAACCCGGCG
GACCCATGCAGCCCAGTCCACACATGCTGCAGGCACAGCAGATGCAGCAG
CTCCGCATGATAAGCAGACAAATGCCACCCAAATGAAAGCTTTCTAGACC
AT

BS14994.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:41:13
Subject Length Description Subject Range Query Range Score Percent Strand
MED28-RA 570 CG5121-PA 1..570 17..586 2850 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:41:14
Subject Length Description Subject Range Query Range Score Percent Strand
MED28-RA 743 CG5121-RA 99..671 16..588 2865 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:41:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25477101..25477673 16..588 2865 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:41:12 has no hits.

BS14994.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:00 Download gff for BS14994.complete
Subject Subject Range Query Range Percent Splice Strand
MED28-RA 1..570 17..586 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:06:42 Download gff for BS14994.complete
Subject Subject Range Query Range Percent Splice Strand
MED28-RA 99..671 16..588 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:20:09 Download gff for BS14994.complete
Subject Subject Range Query Range Percent Splice Strand
MED28-RA 100..668 17..585 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:00 Download gff for BS14994.complete
Subject Subject Range Query Range Percent Splice Strand
MED28-RA 99..671 16..588 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:28:14 Download gff for BS14994.complete
Subject Subject Range Query Range Percent Splice Strand
MED28-RA 100..668 17..585 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:28:14 Download gff for BS14994.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25477102..25477670 17..585 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:20:09 Download gff for BS14994.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21302824..21303392 17..585 100   Plus

BS14994.pep Sequence

Translation from 16 to 585

> BS14994.pep
MASNESGGGNLMDEFEEAFQSCLLTLTKQEPNSGTNKEEIDLEVQKTTNR
FIDVARQMEAFFLQKRFLVSTLKPYMLIKDENQDLSIEIQRKEALLQKHY
NRLEEWKACLSDIQQGVHSRPTPPIGSGMLQGPGGGMPPMGGTPPRPGMM
PGMPPGAMQPGGPMQPSPHMLQAQQMQQLRMISRQMPPK*

BS14994.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:29:37
Subject Length Description Subject Range Query Range Score Percent Strand
MED28-PA 189 CG5121-PA 1..189 1..189 1001 100 Plus