Clone Sequence Records
BS14994.3prime Sequence
600 bp (600 high quality bases) assembled on 2006-10-13
> BS14994.3prime
ATGGTCTAGAAAGCTTTCATTTGGGTGGCATTTGTCTGCTTATCATGCGG
AGCTGCTGCATCTGCTGTGCCTGCAGCATGTGTGGACTGGGCTGCATGGG
TCCGCCGGGTTGCATTGCACCCGGAGGCATTCCGGGCATCATTCCCGGTC
GCGGCGGTGTACCTCCCATGGGTGGCATTCCGCCACCGGGACCTTGCAGC
ATTCCAGAGCCGATGGGCGGCGTGGGGCGACTGTGTACGCCCTGTTGGAT
GTCCGATAGGCAGGCCTTCCACTCCTCCAGGCGATTGTAGTGCTTCTGCA
GGAGTGCCTCCTTGCGTTGAATCTCGATGCTCAGGTCCTGATTCTCGTCC
TTGATCAGCATGTAGGGCTTCAGCGTGGAGACGAGAAAACGCTTCTGCAG
GAAGAACGCCTCCATTTGGCGGGCGACGTCTATGAAGCGATTTGTGGTCT
TCTGTACCTCCAGATCGATTTCCTCCTTGTTTGTCCCGGAATTCGGCTCC
TGTTTGGTCAGCGTCAGCAGGCACGACTGGAAGGCCTCCTCGAACTCGTC
CATCAGGTTACCGCCGCCGGACTCATTGCTGGCCATGTCGACTGATAACT
BS14994.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:55:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5121-PA | 570 | MED28-RA | 1..570 | 586..17 | 2850 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:40:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED28-RA | 743 | CG5121-RA | 99..671 | 587..15 | 2865 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:40:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25477101..25477673 | 587..15 | 2865 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 11:40:46 has no hits.
BS14994.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:55 Download gff for
BS14994.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5121-PA | 1..570 | 17..586 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:36:02 Download gff for
BS14994.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED28-RA | 99..671 | 15..587 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:41:25 Download gff for
BS14994.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED28-RA | 99..671 | 15..587 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:25 Download gff for
BS14994.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25477101..25477673 | 15..587 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:36:02 Download gff for
BS14994.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21302823..21303395 | 15..587 | 100 | | Minus |
BS14994.5prime Sequence
600 bp (600 high quality bases) assembled on 2006-10-13
> BS14994.5prime
GAAGTTATCAGTCGACATGGCCAGCAATGAGTCCGGCGGCGGTAACCTGA
TGGACGAGTTCGAGGAGGCCTTCCAGTCGTGCCTGCTGACGCTGACCAAA
CAGGAGCCGAATTCCGGGACAAACAAGGAGGAAATCGATCTGGAGGTACA
GAAGACCACAAATCGCTTCATAGACGTCGCCCGCCAAATGGAGGCGTTCT
TCCTGCAGAAGCGTTTTCTCGTCTCCACGCTGAAGCCCTACATGCTGATC
AAGGACGAGAATCAGGACCTGAGCATCGAGATTCAACGCAAGGAGGCACT
CCTGCAGAAGCACTACAATCGCCTGGAGGAGTGGAAGGCCTGCCTATCGG
ACATCCAACAGGGCGTACACAGTCGCCCCACGCCGCCCATCGGCTCTGGA
ATGCTGCAAGGTCCCGGTGGCGGAATGCCACCCATGGGAGGTACACCGCC
GCGACCGGGAATGATGCCCGGAATGCCTCCGGGTGCAATGCAACCCGGCG
GACCCATGCAGCCCAGTCCACACATGCTGCAGGCACAGCAGATGCAGCAG
CTCCGCATGATAAGCAGACAAATGCCACCCAAATGAAAGCTTTCTAGACC
BS14994.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:55:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5121-PA | 570 | MED28-RA | 1..570 | 17..586 | 2850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:45:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED28-RA | 743 | CG5121-RA | 99..671 | 16..588 | 2865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:45:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25477101..25477673 | 16..588 | 2865 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 17:45:46 has no hits.
BS14994.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:55 Download gff for
BS14994.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5121-PA | 1..570 | 17..586 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:39:33 Download gff for
BS14994.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED28-RA | 99..671 | 16..588 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:11:10 Download gff for
BS14994.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED28-RA | 99..671 | 16..588 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:10 Download gff for
BS14994.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25477101..25477673 | 16..588 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:39:33 Download gff for
BS14994.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21302823..21303395 | 16..588 | 100 | | Plus |
BS14994.complete Sequence
602 bp assembled on 2006-11-01
GenBank Submission: FJ637852
> BS14994.complete
GAAGTTATCAGTCGACATGGCCAGCAATGAGTCCGGCGGCGGTAACCTGA
TGGACGAGTTCGAGGAGGCCTTCCAGTCGTGCCTGCTGACGCTGACCAAA
CAGGAGCCGAATTCCGGGACAAACAAGGAGGAAATCGATCTGGAGGTACA
GAAGACCACAAATCGCTTCATAGACGTCGCCCGCCAAATGGAGGCGTTCT
TCCTGCAGAAGCGTTTTCTCGTCTCCACGCTGAAGCCCTACATGCTGATC
AAGGACGAGAATCAGGACCTGAGCATCGAGATTCAACGCAAGGAGGCACT
CCTGCAGAAGCACTACAATCGCCTGGAGGAGTGGAAGGCCTGCCTATCGG
ACATCCAACAGGGCGTACACAGTCGCCCCACGCCGCCCATCGGCTCTGGA
ATGCTGCAAGGTCCCGGTGGCGGAATGCCACCCATGGGAGGTACACCGCC
GCGACCGGGAATGATGCCCGGAATGCCTCCGGGTGCAATGCAACCCGGCG
GACCCATGCAGCCCAGTCCACACATGCTGCAGGCACAGCAGATGCAGCAG
CTCCGCATGATAAGCAGACAAATGCCACCCAAATGAAAGCTTTCTAGACC
AT
BS14994.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:41:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED28-RA | 570 | CG5121-PA | 1..570 | 17..586 | 2850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:41:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED28-RA | 743 | CG5121-RA | 99..671 | 16..588 | 2865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:41:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25477101..25477673 | 16..588 | 2865 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:41:12 has no hits.
BS14994.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:00 Download gff for
BS14994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED28-RA | 1..570 | 17..586 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:06:42 Download gff for
BS14994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED28-RA | 99..671 | 16..588 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:20:09 Download gff for
BS14994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED28-RA | 100..668 | 17..585 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:00 Download gff for
BS14994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED28-RA | 99..671 | 16..588 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:28:14 Download gff for
BS14994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED28-RA | 100..668 | 17..585 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:28:14 Download gff for
BS14994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25477102..25477670 | 17..585 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:20:09 Download gff for
BS14994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21302824..21303392 | 17..585 | 100 | | Plus |
BS14994.pep Sequence
Translation from 16 to 585
> BS14994.pep
MASNESGGGNLMDEFEEAFQSCLLTLTKQEPNSGTNKEEIDLEVQKTTNR
FIDVARQMEAFFLQKRFLVSTLKPYMLIKDENQDLSIEIQRKEALLQKHY
NRLEEWKACLSDIQQGVHSRPTPPIGSGMLQGPGGGMPPMGGTPPRPGMM
PGMPPGAMQPGGPMQPSPHMLQAQQMQQLRMISRQMPPK*
BS14994.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:29:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED28-PA | 189 | CG5121-PA | 1..189 | 1..189 | 1001 | 100 | Plus |