Clone BS15005 Report

Search the DGRC for BS15005

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:150
Well:5
Vector:pDNR-Dual
Associated Gene/TranscriptCG3925-RA
Protein status:BS15005.pep: full length peptide match
Sequenced Size:1790

Clone Sequence Records

BS15005.complete Sequence

1790 bp assembled on 2009-12-07

GenBank Submission: KX800954

> BS15005.complete
GAAGTTATCAGTCGACATGGACGAAGAGGAGAACTCAGAAATCAATTCTG
TGCAAGCACGGGATGAAGATGTGCAATTGGAGGACCAACAGTCACAGGGG
CTCCAGGATCGGCAGGTAGACGTGATAGAACAGGCTTGGAACAATGCAAT
GCCAGACGAGCCGTCACCGCCGGCAGAAGATGCCTTCCAAGATCCACTGG
CCACCGATGGTGAGGGAGGGGATGCACTTGAGGCCATGGTAGAGAACGTT
TTGCAGGACGACACAGCAAGCGAGGGCAGTCATCCCAGCAGTGACATGTC
TCTGGAAAGTCCAGGAAGTGAAGATGATTCCGATCTGGAGAGCCTGCCCC
ATTGGATGATTCCGCAGAACCGACTGCGCTCCGCCGTAGACATGATGGTC
TCGCAAGCCCGCAATCGGGATGGTGGAATCGCTGCACTGCTCAGTGGGGA
CAACTTCCTACAGCGAGTGCGTAGCATGGTCTTTAGCCAGGAGCGACGGC
GCAGTCGCACAAGCGAGGAAACGAGCCAGGAGGCTGCCGAGCAGCCCGTT
GATCCACCGCCACAGCAGCCACCTCGACCACCAATCGACATTGGCTTTGA
CACCAATCTGCCAGCGGAGCATTCATACTTCGGTAATCATTTGAGTCGCG
TGCCCGGAGTGGACTACTTGGAGGTGGGCAGCGTCCATCACATGCTCATC
TTCTTGCACCAGCACATCCTCTTTCCCGGCGAGGTGCTTCCCTTCATGAT
CGACGGCCGAATGTTTGACGAGGATATGCCCGGTCTGGACGGTCTGATCT
TCGGTGTAAGCTTCCCGCGTTTGCAGCCGCCGGAGGACAACCCACACAAG
TTGTATGGGGTCACGTGTCAGATCTACGAAAGGGGCGAAAGCGGCCGAGG
ATTGGTGTTCTACAAATCACGAGCACTGCAGCGCATTGTCATCAACTGCG
ATGATATAAAAGGGTCACCGCAGTACATTGCTCGCAATCCAACTAGCAAA
TGCTTCAGCAAAGTCAAAATATTGCCCGAGTATTTCCTGCCCGAACCGCT
CCAAACTGTTGACATGGGCTCGATGGCCAGATTTCGGGATATACCCTCGA
TGCGCGACAAGTATCGCAGGTTCCAGCTAAGCACTACCACCTGGCCATCT
GATGCCTGCCAAGAGTATTCGTTTTCTTCAATTGTGGAGCGAGCACGCCA
GAGGCTGGAGTCCCAAAAGATAGACACAATGCCAAAATGCCCCATTCAGT
TGTCCTTCTGGTTGGTGCGTAACCTTCACCTGACCGAGAAGATGATGCGG
CTTACCTTCCTCACCGACTCGGTTAACACTCGCCTCCAATTGATCAAAAG
CACGTTCAAGGACGAGACACTCTTCTTTTGCCGATATTGCAATAGCAGCT
TGGCCCTCTGCTCGGATCTCTTTGCCATGTCCAAACACGGTGTGCAGACA
CAGTATTGCAATCCAGAGGGCTACATCCACGAGACAAACACCGTGTACCG
GGTGATATCCCATGCCATCGGCTACAGCGGCGAGCCGTCCACAAAGTTTA
GCTGGTTCCCCGGCTATCAGTGGCACATTATTCTGTGCAAGTTCTGCGCC
CAGCACGTCGGGTGGGAGTTCAAGGCCGTGCATCCCAACCTAACACCCAA
GGTGTTTTTCGGTTTGGCCGGCTCCAGCGTGCGGATTGGAAAAGCCAGCG
AGTACTCGCCCTTCAATGGAACCACCTATGTGGTGCGGAATATGATGCGG
ATGATCTCAAGCGATATGGAATGAAAGCTTTCTAGACCAT

BS15005.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:59:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG3925-RA 1758 CG3925-PA 1..1758 17..1774 8790 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:59:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG3925-RA 2061 CG3925-RA 98..1855 17..1774 8790 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:59:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10049738..10050381 322..965 3220 100 Plus
3R 32079331 3R 10050439..10050942 963..1466 2520 100 Plus
3R 32079331 3R 10051011..10051321 1464..1774 1555 100 Plus
3R 32079331 3R 10049387..10049674 36..323 1440 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:59:16 has no hits.

BS15005.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:44:02 Download gff for BS15005.complete
Subject Subject Range Query Range Percent Splice Strand
CG3925-RA 131..1887 17..1773 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:02:59 Download gff for BS15005.complete
Subject Subject Range Query Range Percent Splice Strand
CG3925-RA 98..1854 17..1773 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:25:26 Download gff for BS15005.complete
Subject Subject Range Query Range Percent Splice Strand
CG3925-RA 131..1887 17..1773 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:01:22 Download gff for BS15005.complete
Subject Subject Range Query Range Percent Splice Strand
CG3925-RA 98..1854 17..1773 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:01:22 Download gff for BS15005.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10051014..10051320 1467..1773 100   Plus
3R 10049296..10049317 17..38 100 -> Plus
3R 10049390..10049674 39..323 100 -> Plus
3R 10049740..10050379 324..963 100 -> Plus
3R 10050440..10050942 964..1466 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:02:59 Download gff for BS15005.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5875018..5875039 17..38 100 -> Plus
arm_3R 5875112..5875396 39..323 100 -> Plus
arm_3R 5875462..5876101 324..963 100 -> Plus
arm_3R 5876162..5876664 964..1466 100 -> Plus
arm_3R 5876736..5877042 1467..1773 100   Plus

BS15005.3prime Sequence

890 bp (837 high quality bases) assembled on 2006-10-23

> BS15005.3prime
ATGGTCTAGAAAGCTTTCATTCCATATCGCTTGAGATCATCCGCATCATA
TTCCGCACCACATAGGTGGTTCCATTGAAGGGCGAGTACTCGCTGGCTTT
TCCAATCCGCACGCTGGAGCCGGCCAAACCGAAAAACACCTTGGGTGTTA
GGTTGGGATGCACGGCCTTGAACTCCCACCCGACGTGCTGGGCGCAGAAC
TTGCACAGAATAATGTGCCACTGATAGCCGGGGAACCAGCTAAACTTTGT
GGACGGCTCGCCGCTGTAGCCGATGGCATGGGATATCACCCGGTACACGG
TGTTTGTCTCGTGGATGTAGCCCTCTGGATTGCAATACTGTGTCTGCACA
CCGTGTTTGGACATGGCAAAGAGATCCGAGCAGAGGGCCAAGCTGCTATT
GCAATATCGGCAAAAGAAGAGTGTCTCGTCCTTGAACGTGCTTTTGATCA
ATTGGAGGCGAGTGTTAACCGAGTCGGTGAGGAAGGTAAGCCGCATCATC
TTCTCGGTCAGGTGAAGGTTACGCACCAACCAGAAGGACAACTGAATGGG
GCATTTTGGCATTGTGTCTATCTTTTGGGACTCCAGCCTCTGGCGTGCTC
GCTCCACAATTGAAGAAAACGAATACTCTTGGCAGGCATCAGATGGCCAG
GTGGTAGTGCTTAGCTGGAACCTGCGATACTTGTCGCGCATCGAGGGTAT
ATCCCGAAATCTGGCCATCGAGCCCATGTCAACAGTTTGGAGCGGTTCGG
GCAGGAAATACTCGGGCAATATTTTGACTTTGCTGAAGCATTTGCTAGTT
GGATTGCGAGCAATGTACTGCGGTGACCCTTTTATATCATCGCAGTTGAT
GACAATGCGCTGCAGTGCTCGTGATTTGTAAAACACCAAT

BS15005.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:12:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG3925-PA 1758 CG3925-RA 885..1758 890..17 4345 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:17:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG3925-RA 2061 CG3925-RA 982..1855 890..17 4355 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:16:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10050439..10050942 828..325 2520 100 Minus
3R 32079331 3R 10051011..10051321 327..17 1555 100 Minus
3R 32079331 3R 10050317..10050381 890..826 310 98.5 Minus
Blast to na_te.dros performed on 2015-02-11 17:17:00 has no hits.

BS15005.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:14:16 Download gff for BS15005.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3925-PA 885..1758 17..890 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:46:52 Download gff for BS15005.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3925-PA 885..1758 17..890 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:53:43 Download gff for BS15005.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3925-RA 982..1859 12..890 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:10:21 Download gff for BS15005.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3925-RA 982..1859 12..890 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:10:21 Download gff for BS15005.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 10050317..10050379 828..890 98 -> Minus
3R 10050440..10050942 325..827 100 -> Minus
3R 10051014..10051325 12..324 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:53:43 Download gff for BS15005.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5876039..5876101 828..890 98 -> Minus
arm_3R 5876162..5876664 325..827 100 -> Minus
arm_3R 5876736..5877047 12..324 99   Minus

BS15005.5prime Sequence

820 bp (769 high quality bases) assembled on 2006-10-23

> BS15005.5prime
GAAGTTATCAGTCGACATGGACGAAGAGGAGAACTCAGAAATCAATTCTG
TGCAAGCACGGGATGAAGATGTGCAATTGGAGGACCAACAGTCACAGGGG
CTCCAGGATCGGCAGGTAGACGTGATAGAACAGGCTTGGAACAATGCAAT
GCCAGACGAGCCGTCACCGCCGGCAGAAGATGCCTTCCAAGATCCACTGG
CCACCGATGGTGAGGGAGGGGATGCACTTGAGGCCATGGTAGAGAACGTT
TTGCAGGACGACACAGCAAGCGAGGGCAGTCATCCCAGCAGTGACATGTC
TCTGGAAAGTCCAGGAAGTGAAGATGATTCCGATCTGGAGAGCCTGCCCC
ATTGGATGATTCCGCAGAACCGACTGCGCTCCGCCGTAGACATGATGGTC
TCGCAAGCCCGCAATCGGGATGGTGGAATCGCTGCACTGCTCAGTGGGGA
CAACTTCCTACAGCGAGTGCGTAGCATGGTCTTTAGCCAGGAGCGACGGC
GCAGTCGCACAAGCGAGGAAACGAGCCAGGAGGCTGCCGAGCAGCCCGTT
GATCCACCGCCACAGCAGCCACCTCGACCACCAATCGACATTGGCTTTGA
CACCAATCTGCCAGCGGAGCATTCATACTTCGGTAATCATTTGAGTCGCG
TGCCCGGAGTGGACTACTTGGAGGTGGGCAGCGTCCATCACATGCTCATC
TTCTTGCACCAGCACATCCTCTTTCCCGGCGAGGTGCTTCCCTTCATGAT
CGACGGCCGAATGTTTGACGAGGATATGCCCGGTCTGGACGGTCTGATCT
TCGGTGTAAGCTTCCCGCGT

BS15005.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:12:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG3925-PA 1758 CG3925-RA 1..804 17..820 4020 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:15:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG3925-RA 2061 CG3925-RA 98..901 17..820 4020 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:15:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10049738..10050236 322..820 2495 100 Plus
3R 32079331 3R 10049387..10049674 36..323 1440 100 Plus
Blast to na_te.dros performed on 2015-02-13 06:15:29 has no hits.

BS15005.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:14:17 Download gff for BS15005.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3925-PA 1..804 17..820 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:46:53 Download gff for BS15005.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3925-PA 1..804 17..820 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:53:09 Download gff for BS15005.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3925-RA 94..901 12..820 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:19:39 Download gff for BS15005.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3925-RA 94..901 12..820 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:19:39 Download gff for BS15005.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10049292..10049317 12..38 92 -> Plus
3R 10049390..10049674 39..323 100 -> Plus
3R 10049740..10050236 324..820 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:53:09 Download gff for BS15005.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5875014..5875039 12..38 92 -> Plus
arm_3R 5875112..5875396 39..323 100 -> Plus
arm_3R 5875462..5875958 324..820 100   Plus

BS15005.pep Sequence

Translation from 16 to 1773

> BS15005.pep
MDEEENSEINSVQARDEDVQLEDQQSQGLQDRQVDVIEQAWNNAMPDEPS
PPAEDAFQDPLATDGEGGDALEAMVENVLQDDTASEGSHPSSDMSLESPG
SEDDSDLESLPHWMIPQNRLRSAVDMMVSQARNRDGGIAALLSGDNFLQR
VRSMVFSQERRRSRTSEETSQEAAEQPVDPPPQQPPRPPIDIGFDTNLPA
EHSYFGNHLSRVPGVDYLEVGSVHHMLIFLHQHILFPGEVLPFMIDGRMF
DEDMPGLDGLIFGVSFPRLQPPEDNPHKLYGVTCQIYERGESGRGLVFYK
SRALQRIVINCDDIKGSPQYIARNPTSKCFSKVKILPEYFLPEPLQTVDM
GSMARFRDIPSMRDKYRRFQLSTTTWPSDACQEYSFSSIVERARQRLESQ
KIDTMPKCPIQLSFWLVRNLHLTEKMMRLTFLTDSVNTRLQLIKSTFKDE
TLFFCRYCNSSLALCSDLFAMSKHGVQTQYCNPEGYIHETNTVYRVISHA
IGYSGEPSTKFSWFPGYQWHIILCKFCAQHVGWEFKAVHPNLTPKVFFGL
AGSSVRIGKASEYSPFNGTTYVVRNMMRMISSDME*

BS15005.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:56:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG3925-PA 585 CG3925-PA 1..585 1..585 3110 100 Plus