Clone Sequence Records
BS15005.complete Sequence
1790 bp assembled on 2009-12-07
GenBank Submission: KX800954
> BS15005.complete
GAAGTTATCAGTCGACATGGACGAAGAGGAGAACTCAGAAATCAATTCTG
TGCAAGCACGGGATGAAGATGTGCAATTGGAGGACCAACAGTCACAGGGG
CTCCAGGATCGGCAGGTAGACGTGATAGAACAGGCTTGGAACAATGCAAT
GCCAGACGAGCCGTCACCGCCGGCAGAAGATGCCTTCCAAGATCCACTGG
CCACCGATGGTGAGGGAGGGGATGCACTTGAGGCCATGGTAGAGAACGTT
TTGCAGGACGACACAGCAAGCGAGGGCAGTCATCCCAGCAGTGACATGTC
TCTGGAAAGTCCAGGAAGTGAAGATGATTCCGATCTGGAGAGCCTGCCCC
ATTGGATGATTCCGCAGAACCGACTGCGCTCCGCCGTAGACATGATGGTC
TCGCAAGCCCGCAATCGGGATGGTGGAATCGCTGCACTGCTCAGTGGGGA
CAACTTCCTACAGCGAGTGCGTAGCATGGTCTTTAGCCAGGAGCGACGGC
GCAGTCGCACAAGCGAGGAAACGAGCCAGGAGGCTGCCGAGCAGCCCGTT
GATCCACCGCCACAGCAGCCACCTCGACCACCAATCGACATTGGCTTTGA
CACCAATCTGCCAGCGGAGCATTCATACTTCGGTAATCATTTGAGTCGCG
TGCCCGGAGTGGACTACTTGGAGGTGGGCAGCGTCCATCACATGCTCATC
TTCTTGCACCAGCACATCCTCTTTCCCGGCGAGGTGCTTCCCTTCATGAT
CGACGGCCGAATGTTTGACGAGGATATGCCCGGTCTGGACGGTCTGATCT
TCGGTGTAAGCTTCCCGCGTTTGCAGCCGCCGGAGGACAACCCACACAAG
TTGTATGGGGTCACGTGTCAGATCTACGAAAGGGGCGAAAGCGGCCGAGG
ATTGGTGTTCTACAAATCACGAGCACTGCAGCGCATTGTCATCAACTGCG
ATGATATAAAAGGGTCACCGCAGTACATTGCTCGCAATCCAACTAGCAAA
TGCTTCAGCAAAGTCAAAATATTGCCCGAGTATTTCCTGCCCGAACCGCT
CCAAACTGTTGACATGGGCTCGATGGCCAGATTTCGGGATATACCCTCGA
TGCGCGACAAGTATCGCAGGTTCCAGCTAAGCACTACCACCTGGCCATCT
GATGCCTGCCAAGAGTATTCGTTTTCTTCAATTGTGGAGCGAGCACGCCA
GAGGCTGGAGTCCCAAAAGATAGACACAATGCCAAAATGCCCCATTCAGT
TGTCCTTCTGGTTGGTGCGTAACCTTCACCTGACCGAGAAGATGATGCGG
CTTACCTTCCTCACCGACTCGGTTAACACTCGCCTCCAATTGATCAAAAG
CACGTTCAAGGACGAGACACTCTTCTTTTGCCGATATTGCAATAGCAGCT
TGGCCCTCTGCTCGGATCTCTTTGCCATGTCCAAACACGGTGTGCAGACA
CAGTATTGCAATCCAGAGGGCTACATCCACGAGACAAACACCGTGTACCG
GGTGATATCCCATGCCATCGGCTACAGCGGCGAGCCGTCCACAAAGTTTA
GCTGGTTCCCCGGCTATCAGTGGCACATTATTCTGTGCAAGTTCTGCGCC
CAGCACGTCGGGTGGGAGTTCAAGGCCGTGCATCCCAACCTAACACCCAA
GGTGTTTTTCGGTTTGGCCGGCTCCAGCGTGCGGATTGGAAAAGCCAGCG
AGTACTCGCCCTTCAATGGAACCACCTATGTGGTGCGGAATATGATGCGG
ATGATCTCAAGCGATATGGAATGAAAGCTTTCTAGACCAT
BS15005.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:59:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3925-RA | 1758 | CG3925-PA | 1..1758 | 17..1774 | 8790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:59:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3925-RA | 2061 | CG3925-RA | 98..1855 | 17..1774 | 8790 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:59:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10049738..10050381 | 322..965 | 3220 | 100 | Plus |
3R | 32079331 | 3R | 10050439..10050942 | 963..1466 | 2520 | 100 | Plus |
3R | 32079331 | 3R | 10051011..10051321 | 1464..1774 | 1555 | 100 | Plus |
3R | 32079331 | 3R | 10049387..10049674 | 36..323 | 1440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:59:16 has no hits.
BS15005.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:44:02 Download gff for
BS15005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3925-RA | 131..1887 | 17..1773 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:02:59 Download gff for
BS15005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3925-RA | 98..1854 | 17..1773 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:25:26 Download gff for
BS15005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3925-RA | 131..1887 | 17..1773 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:01:22 Download gff for
BS15005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3925-RA | 98..1854 | 17..1773 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:01:22 Download gff for
BS15005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10051014..10051320 | 1467..1773 | 100 | | Plus |
3R | 10049296..10049317 | 17..38 | 100 | -> | Plus |
3R | 10049390..10049674 | 39..323 | 100 | -> | Plus |
3R | 10049740..10050379 | 324..963 | 100 | -> | Plus |
3R | 10050440..10050942 | 964..1466 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:02:59 Download gff for
BS15005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5875018..5875039 | 17..38 | 100 | -> | Plus |
arm_3R | 5875112..5875396 | 39..323 | 100 | -> | Plus |
arm_3R | 5875462..5876101 | 324..963 | 100 | -> | Plus |
arm_3R | 5876162..5876664 | 964..1466 | 100 | -> | Plus |
arm_3R | 5876736..5877042 | 1467..1773 | 100 | | Plus |
BS15005.3prime Sequence
890 bp (837 high quality bases) assembled on 2006-10-23
> BS15005.3prime
ATGGTCTAGAAAGCTTTCATTCCATATCGCTTGAGATCATCCGCATCATA
TTCCGCACCACATAGGTGGTTCCATTGAAGGGCGAGTACTCGCTGGCTTT
TCCAATCCGCACGCTGGAGCCGGCCAAACCGAAAAACACCTTGGGTGTTA
GGTTGGGATGCACGGCCTTGAACTCCCACCCGACGTGCTGGGCGCAGAAC
TTGCACAGAATAATGTGCCACTGATAGCCGGGGAACCAGCTAAACTTTGT
GGACGGCTCGCCGCTGTAGCCGATGGCATGGGATATCACCCGGTACACGG
TGTTTGTCTCGTGGATGTAGCCCTCTGGATTGCAATACTGTGTCTGCACA
CCGTGTTTGGACATGGCAAAGAGATCCGAGCAGAGGGCCAAGCTGCTATT
GCAATATCGGCAAAAGAAGAGTGTCTCGTCCTTGAACGTGCTTTTGATCA
ATTGGAGGCGAGTGTTAACCGAGTCGGTGAGGAAGGTAAGCCGCATCATC
TTCTCGGTCAGGTGAAGGTTACGCACCAACCAGAAGGACAACTGAATGGG
GCATTTTGGCATTGTGTCTATCTTTTGGGACTCCAGCCTCTGGCGTGCTC
GCTCCACAATTGAAGAAAACGAATACTCTTGGCAGGCATCAGATGGCCAG
GTGGTAGTGCTTAGCTGGAACCTGCGATACTTGTCGCGCATCGAGGGTAT
ATCCCGAAATCTGGCCATCGAGCCCATGTCAACAGTTTGGAGCGGTTCGG
GCAGGAAATACTCGGGCAATATTTTGACTTTGCTGAAGCATTTGCTAGTT
GGATTGCGAGCAATGTACTGCGGTGACCCTTTTATATCATCGCAGTTGAT
GACAATGCGCTGCAGTGCTCGTGATTTGTAAAACACCAAT
BS15005.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:12:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3925-PA | 1758 | CG3925-RA | 885..1758 | 890..17 | 4345 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:17:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3925-RA | 2061 | CG3925-RA | 982..1855 | 890..17 | 4355 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:16:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10050439..10050942 | 828..325 | 2520 | 100 | Minus |
3R | 32079331 | 3R | 10051011..10051321 | 327..17 | 1555 | 100 | Minus |
3R | 32079331 | 3R | 10050317..10050381 | 890..826 | 310 | 98.5 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:17:00 has no hits.
BS15005.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:14:16 Download gff for
BS15005.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3925-PA | 885..1758 | 17..890 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:46:52 Download gff for
BS15005.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3925-PA | 885..1758 | 17..890 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:53:43 Download gff for
BS15005.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3925-RA | 982..1859 | 12..890 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:10:21 Download gff for
BS15005.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3925-RA | 982..1859 | 12..890 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:10:21 Download gff for
BS15005.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10050317..10050379 | 828..890 | 98 | -> | Minus |
3R | 10050440..10050942 | 325..827 | 100 | -> | Minus |
3R | 10051014..10051325 | 12..324 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:53:43 Download gff for
BS15005.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5876039..5876101 | 828..890 | 98 | -> | Minus |
arm_3R | 5876162..5876664 | 325..827 | 100 | -> | Minus |
arm_3R | 5876736..5877047 | 12..324 | 99 | | Minus |
BS15005.5prime Sequence
820 bp (769 high quality bases) assembled on 2006-10-23
> BS15005.5prime
GAAGTTATCAGTCGACATGGACGAAGAGGAGAACTCAGAAATCAATTCTG
TGCAAGCACGGGATGAAGATGTGCAATTGGAGGACCAACAGTCACAGGGG
CTCCAGGATCGGCAGGTAGACGTGATAGAACAGGCTTGGAACAATGCAAT
GCCAGACGAGCCGTCACCGCCGGCAGAAGATGCCTTCCAAGATCCACTGG
CCACCGATGGTGAGGGAGGGGATGCACTTGAGGCCATGGTAGAGAACGTT
TTGCAGGACGACACAGCAAGCGAGGGCAGTCATCCCAGCAGTGACATGTC
TCTGGAAAGTCCAGGAAGTGAAGATGATTCCGATCTGGAGAGCCTGCCCC
ATTGGATGATTCCGCAGAACCGACTGCGCTCCGCCGTAGACATGATGGTC
TCGCAAGCCCGCAATCGGGATGGTGGAATCGCTGCACTGCTCAGTGGGGA
CAACTTCCTACAGCGAGTGCGTAGCATGGTCTTTAGCCAGGAGCGACGGC
GCAGTCGCACAAGCGAGGAAACGAGCCAGGAGGCTGCCGAGCAGCCCGTT
GATCCACCGCCACAGCAGCCACCTCGACCACCAATCGACATTGGCTTTGA
CACCAATCTGCCAGCGGAGCATTCATACTTCGGTAATCATTTGAGTCGCG
TGCCCGGAGTGGACTACTTGGAGGTGGGCAGCGTCCATCACATGCTCATC
TTCTTGCACCAGCACATCCTCTTTCCCGGCGAGGTGCTTCCCTTCATGAT
CGACGGCCGAATGTTTGACGAGGATATGCCCGGTCTGGACGGTCTGATCT
TCGGTGTAAGCTTCCCGCGT
BS15005.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:12:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3925-PA | 1758 | CG3925-RA | 1..804 | 17..820 | 4020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:15:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3925-RA | 2061 | CG3925-RA | 98..901 | 17..820 | 4020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:15:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10049738..10050236 | 322..820 | 2495 | 100 | Plus |
3R | 32079331 | 3R | 10049387..10049674 | 36..323 | 1440 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:15:29 has no hits.
BS15005.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:14:17 Download gff for
BS15005.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3925-PA | 1..804 | 17..820 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:46:53 Download gff for
BS15005.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3925-PA | 1..804 | 17..820 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:53:09 Download gff for
BS15005.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3925-RA | 94..901 | 12..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:19:39 Download gff for
BS15005.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3925-RA | 94..901 | 12..820 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:19:39 Download gff for
BS15005.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10049292..10049317 | 12..38 | 92 | -> | Plus |
3R | 10049390..10049674 | 39..323 | 100 | -> | Plus |
3R | 10049740..10050236 | 324..820 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:53:09 Download gff for
BS15005.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5875014..5875039 | 12..38 | 92 | -> | Plus |
arm_3R | 5875112..5875396 | 39..323 | 100 | -> | Plus |
arm_3R | 5875462..5875958 | 324..820 | 100 | | Plus |
BS15005.pep Sequence
Translation from 16 to 1773
> BS15005.pep
MDEEENSEINSVQARDEDVQLEDQQSQGLQDRQVDVIEQAWNNAMPDEPS
PPAEDAFQDPLATDGEGGDALEAMVENVLQDDTASEGSHPSSDMSLESPG
SEDDSDLESLPHWMIPQNRLRSAVDMMVSQARNRDGGIAALLSGDNFLQR
VRSMVFSQERRRSRTSEETSQEAAEQPVDPPPQQPPRPPIDIGFDTNLPA
EHSYFGNHLSRVPGVDYLEVGSVHHMLIFLHQHILFPGEVLPFMIDGRMF
DEDMPGLDGLIFGVSFPRLQPPEDNPHKLYGVTCQIYERGESGRGLVFYK
SRALQRIVINCDDIKGSPQYIARNPTSKCFSKVKILPEYFLPEPLQTVDM
GSMARFRDIPSMRDKYRRFQLSTTTWPSDACQEYSFSSIVERARQRLESQ
KIDTMPKCPIQLSFWLVRNLHLTEKMMRLTFLTDSVNTRLQLIKSTFKDE
TLFFCRYCNSSLALCSDLFAMSKHGVQTQYCNPEGYIHETNTVYRVISHA
IGYSGEPSTKFSWFPGYQWHIILCKFCAQHVGWEFKAVHPNLTPKVFFGL
AGSSVRIGKASEYSPFNGTTYVVRNMMRMISSDME*
BS15005.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:56:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3925-PA | 585 | CG3925-PA | 1..585 | 1..585 | 3110 | 100 | Plus |