Clone Sequence Records
BS15006.3prime Sequence
414 bp (414 high quality bases) assembled on 2006-10-23
> BS15006.3prime
ATGGTCTAGAAAGCTTTTATCTTGGTATATATTTATTTTGAATATTTAAA
TCTTTACCGTCATATGTTATGTCCTCATAAAAAAACTTTCGATTCGAGCG
ACATTGGGGACCACACCTGGTAGAGCCACAACTTCGGCAATTATACCAGC
AACCATCACATTCTTGATTCATACAGTCGCATATGTCCAGACCGTTTGAG
CGAATATTTCCGTATTCATCATATGCGCTATTTTGACATTTCTTTCTGCC
TTTTTTTTTATTTTCGGAATCTAAATAATTTGAGTATTCGTTAGAAACTC
CTTTTTTTCTATGTCTCTGACGCAAATTGCGACTGATGGAATAATCTGAA
TCTAAATACGGCTTCATATCTTGGCGAGAATTTGTTATACTAAAGTGCAT
GTCGACTGATAACT
BS15006.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:12:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14464-PA | 384 | CG14464-RA | 1..384 | 400..17 | 1920 | 100 | Minus |
CG14464-PB | 267 | CG14464-RB | 1..42 | 222..181 | 210 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:27:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14464-RD | 1289 | CG14464-RD | 28..413 | 401..16 | 1930 | 100 | Minus |
CG14464-RC | 637 | CG14464-RC | 28..413 | 401..16 | 1930 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:27:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 4829273..4829494 | 401..180 | 1110 | 100 | Minus |
2R | 25286936 | 2R | 4829547..4829711 | 180..16 | 825 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 03:27:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
FB | 1106 | FB DMTNFB 1106bp AKA(J01084) Derived from V00246 (g8708) (Rel. 36, Last updated, Version 3). | 470..512 | 44..1 | 109 | 75 | Minus |
BS15006.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:57 Download gff for
BS15006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14464-PA | 1..384 | 17..400 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:05:10 Download gff for
BS15006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14464-RC | 24..416 | 11..407 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:54:28 Download gff for
BS15006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14464-RC | 24..416 | 11..407 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:54:28 Download gff for
BS15006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 4829269..4829493 | 181..407 | 98 | -> | Minus |
2R | 4829547..4829714 | 11..180 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:05:10 Download gff for
BS15006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 716774..716998 | 181..407 | 98 | -> | Minus |
arm_2R | 717052..717219 | 11..180 | 98 | | Minus |
BS15006.5prime Sequence
414 bp (414 high quality bases) assembled on 2006-10-23
> BS15006.5prime
GAAGTTATCAGTCGACGTGCACTTTAGTATAACAAATTCTCGCCAAGATA
TGAAGCCGTATTTAGATTCAGATTATTCCATCAGTCGCAATTTGCGTCAG
AGACATAGAAAAAAAGGAGTTTCTAACGAATACTCAAATTATTTAGATTC
CGAAAATAAAAAAAAAGGCAGAAAGAAATGTCAAAATAGCGCATATGATG
AATACGGAAATATTCGCTCAAACGGTCTGGACATATGCGACTGTATGAAT
CAAGAATGTGATGGTTGCTGGTATAATTGCCGAAGTTGTGGCTCTACCAG
GTGTGGTCCCCAATGTCGCTCGAATCGAAAGTTTTTTTATGAGGACATAA
CATATGACGGTAAAGATTTAAATATTCAAAATAAATATATACCAAGATAA
AAGCTTTCTAGACC
BS15006.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:12:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14464-PA | 384 | CG14464-RA | 2..384 | 18..400 | 1915 | 100 | Plus |
CG14464-PB | 267 | CG14464-RB | 1..42 | 195..236 | 210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:26:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14464-RD | 1289 | CG14464-RD | 30..413 | 18..401 | 1920 | 100 | Plus |
CG14464-RC | 637 | CG14464-RC | 30..413 | 18..401 | 1920 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:26:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 4829275..4829494 | 18..237 | 1100 | 100 | Plus |
2R | 25286936 | 2R | 4829547..4829711 | 237..401 | 825 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:26:09 has no hits.
BS15006.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:57 Download gff for
BS15006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14464-PA | 2..384 | 18..400 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:28:37 Download gff for
BS15006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14464-RC | 24..416 | 10..406 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:43:05 Download gff for
BS15006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14464-RC | 24..416 | 10..406 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:43:05 Download gff for
BS15006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 4829269..4829493 | 10..236 | 98 | -> | Plus |
2R | 4829547..4829714 | 237..406 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:28:37 Download gff for
BS15006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 716774..716998 | 10..236 | 98 | -> | Plus |
arm_2R | 717052..717219 | 237..406 | 98 | | Plus |
BS15006.complete Sequence
416 bp assembled on 2006-11-01
GenBank Submission: FJ637853
> BS15006.complete
GAAGTTATCAGTCGACATGCACTTTAGTATAACAAATTCTCGCCAAGATA
TGAAGCCGTATTTAGATTCAGATTATTCCATCAGTCGCAATTTGCGTCAG
AGACATAGAAAAAAAGGAGTTTCTAACGAATACTCAAATTATTTAGATTC
CGAAAATAAAAAAAAAGGCAGAAAGAAATGTCAAAATAGCGCATATGATG
AATACGGAAATATTCGCTCAAACGGTCTGGACATATGCGACTGTATGAAT
CAAGAATGTGATGGTTGCTGGTATAATTGCCGAAGTTGTGGCTCTACCAG
GTGTGGTCCCCAATGTCGCTCGAATCGAAAGTTTTTTTATGAGGACATAA
CATATGACGGTAAAGATTTAAATATTCAAAATAAATATATACCAAGATAA
AAGCTTTCTAGACCAT
BS15006.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:57:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14464-RD | 351 | CG14464-PD | 1..351 | 50..400 | 1755 | 100 | Plus |
CG14464-RC | 351 | CG14464-PC | 1..351 | 50..400 | 1755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:57:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14464-RD | 1289 | CG14464-RD | 28..413 | 16..401 | 1930 | 100 | Plus |
CG14464-RC | 637 | CG14464-RC | 28..413 | 16..401 | 1930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:57:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 4829273..4829494 | 16..237 | 1110 | 100 | Plus |
2R | 25286936 | 2R | 4829547..4829711 | 237..401 | 825 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 16:57:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
FB | 1106 | FB DMTNFB 1106bp AKA(J01084) Derived from V00246 (g8708) (Rel. 36, Last updated, Version 3). | 470..512 | 373..416 | 109 | 75 | Plus |
BS15006.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:40 Download gff for
BS15006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14464-RC | 1..351 | 50..400 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:34:25 Download gff for
BS15006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14464-RC | 50..442 | 10..406 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:03 Download gff for
BS15006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14464-RC | 29..410 | 17..398 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:40 Download gff for
BS15006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14464-RC | 50..442 | 10..406 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:58 Download gff for
BS15006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14464-RC | 29..410 | 17..398 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:30:58 Download gff for
BS15006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 4829274..4829493 | 17..236 | 100 | -> | Plus |
2R | 4829547..4829708 | 237..398 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:03 Download gff for
BS15006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 716779..716998 | 17..236 | 100 | -> | Plus |
arm_2R | 717052..717213 | 237..398 | 100 | | Plus |
BS15006.pep Sequence
Translation from 16 to 399
> BS15006.pep
MHFSITNSRQDMKPYLDSDYSISRNLRQRHRKKGVSNEYSNYLDSENKKK
GRKKCQNSAYDEYGNIRSNGLDICDCMNQECDGCWYNCRSCGSTRCGPQC
RSNRKFFYEDITYDGKDLNIQNKYIPR*
BS15006.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14464-PD | 116 | CG14464-PD | 1..116 | 12..127 | 659 | 100 | Plus |
CG14464-PC | 116 | CG14464-PC | 1..116 | 12..127 | 659 | 100 | Plus |