Clone BS15006 Report

Search the DGRC for BS15006

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:150
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptCG14464-RC
Protein status:BS15006.pep: gold
Sequenced Size:16

Clone Sequence Records

BS15006.3prime Sequence

414 bp (414 high quality bases) assembled on 2006-10-23

> BS15006.3prime
ATGGTCTAGAAAGCTTTTATCTTGGTATATATTTATTTTGAATATTTAAA
TCTTTACCGTCATATGTTATGTCCTCATAAAAAAACTTTCGATTCGAGCG
ACATTGGGGACCACACCTGGTAGAGCCACAACTTCGGCAATTATACCAGC
AACCATCACATTCTTGATTCATACAGTCGCATATGTCCAGACCGTTTGAG
CGAATATTTCCGTATTCATCATATGCGCTATTTTGACATTTCTTTCTGCC
TTTTTTTTTATTTTCGGAATCTAAATAATTTGAGTATTCGTTAGAAACTC
CTTTTTTTCTATGTCTCTGACGCAAATTGCGACTGATGGAATAATCTGAA
TCTAAATACGGCTTCATATCTTGGCGAGAATTTGTTATACTAAAGTGCAT
GTCGACTGATAACT

BS15006.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:12:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG14464-PA 384 CG14464-RA 1..384 400..17 1920 100 Minus
CG14464-PB 267 CG14464-RB 1..42 222..181 210 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:27:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG14464-RD 1289 CG14464-RD 28..413 401..16 1930 100 Minus
CG14464-RC 637 CG14464-RC 28..413 401..16 1930 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:27:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 4829273..4829494 401..180 1110 100 Minus
2R 25286936 2R 4829547..4829711 180..16 825 100 Minus
Blast to na_te.dros performed 2015-02-11 03:27:08
Subject Length Description Subject Range Query Range Score Percent Strand
FB 1106 FB DMTNFB 1106bp AKA(J01084) Derived from V00246 (g8708) (Rel. 36, Last updated, Version 3). 470..512 44..1 109 75 Minus

BS15006.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:57 Download gff for BS15006.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14464-PA 1..384 17..400 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:05:10 Download gff for BS15006.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14464-RC 24..416 11..407 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:54:28 Download gff for BS15006.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14464-RC 24..416 11..407 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:54:28 Download gff for BS15006.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 4829269..4829493 181..407 98 -> Minus
2R 4829547..4829714 11..180 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:05:10 Download gff for BS15006.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 716774..716998 181..407 98 -> Minus
arm_2R 717052..717219 11..180 98   Minus

BS15006.5prime Sequence

414 bp (414 high quality bases) assembled on 2006-10-23

> BS15006.5prime
GAAGTTATCAGTCGACGTGCACTTTAGTATAACAAATTCTCGCCAAGATA
TGAAGCCGTATTTAGATTCAGATTATTCCATCAGTCGCAATTTGCGTCAG
AGACATAGAAAAAAAGGAGTTTCTAACGAATACTCAAATTATTTAGATTC
CGAAAATAAAAAAAAAGGCAGAAAGAAATGTCAAAATAGCGCATATGATG
AATACGGAAATATTCGCTCAAACGGTCTGGACATATGCGACTGTATGAAT
CAAGAATGTGATGGTTGCTGGTATAATTGCCGAAGTTGTGGCTCTACCAG
GTGTGGTCCCCAATGTCGCTCGAATCGAAAGTTTTTTTATGAGGACATAA
CATATGACGGTAAAGATTTAAATATTCAAAATAAATATATACCAAGATAA
AAGCTTTCTAGACC

BS15006.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:12:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG14464-PA 384 CG14464-RA 2..384 18..400 1915 100 Plus
CG14464-PB 267 CG14464-RB 1..42 195..236 210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:26:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG14464-RD 1289 CG14464-RD 30..413 18..401 1920 100 Plus
CG14464-RC 637 CG14464-RC 30..413 18..401 1920 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:26:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 4829275..4829494 18..237 1100 100 Plus
2R 25286936 2R 4829547..4829711 237..401 825 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:26:09 has no hits.

BS15006.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:58:57 Download gff for BS15006.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14464-PA 2..384 18..400 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:28:37 Download gff for BS15006.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14464-RC 24..416 10..406 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:43:05 Download gff for BS15006.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14464-RC 24..416 10..406 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:43:05 Download gff for BS15006.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 4829269..4829493 10..236 98 -> Plus
2R 4829547..4829714 237..406 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:28:37 Download gff for BS15006.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 716774..716998 10..236 98 -> Plus
arm_2R 717052..717219 237..406 98   Plus

BS15006.complete Sequence

416 bp assembled on 2006-11-01

GenBank Submission: FJ637853

> BS15006.complete
GAAGTTATCAGTCGACATGCACTTTAGTATAACAAATTCTCGCCAAGATA
TGAAGCCGTATTTAGATTCAGATTATTCCATCAGTCGCAATTTGCGTCAG
AGACATAGAAAAAAAGGAGTTTCTAACGAATACTCAAATTATTTAGATTC
CGAAAATAAAAAAAAAGGCAGAAAGAAATGTCAAAATAGCGCATATGATG
AATACGGAAATATTCGCTCAAACGGTCTGGACATATGCGACTGTATGAAT
CAAGAATGTGATGGTTGCTGGTATAATTGCCGAAGTTGTGGCTCTACCAG
GTGTGGTCCCCAATGTCGCTCGAATCGAAAGTTTTTTTATGAGGACATAA
CATATGACGGTAAAGATTTAAATATTCAAAATAAATATATACCAAGATAA
AAGCTTTCTAGACCAT

BS15006.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:57:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG14464-RD 351 CG14464-PD 1..351 50..400 1755 100 Plus
CG14464-RC 351 CG14464-PC 1..351 50..400 1755 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:57:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG14464-RD 1289 CG14464-RD 28..413 16..401 1930 100 Plus
CG14464-RC 637 CG14464-RC 28..413 16..401 1930 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:57:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 4829273..4829494 16..237 1110 100 Plus
2R 25286936 2R 4829547..4829711 237..401 825 100 Plus
Blast to na_te.dros performed 2014-11-27 16:57:22
Subject Length Description Subject Range Query Range Score Percent Strand
FB 1106 FB DMTNFB 1106bp AKA(J01084) Derived from V00246 (g8708) (Rel. 36, Last updated, Version 3). 470..512 373..416 109 75 Plus

BS15006.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:40 Download gff for BS15006.complete
Subject Subject Range Query Range Percent Splice Strand
CG14464-RC 1..351 50..400 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:34:25 Download gff for BS15006.complete
Subject Subject Range Query Range Percent Splice Strand
CG14464-RC 50..442 10..406 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:03 Download gff for BS15006.complete
Subject Subject Range Query Range Percent Splice Strand
CG14464-RC 29..410 17..398 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:40 Download gff for BS15006.complete
Subject Subject Range Query Range Percent Splice Strand
CG14464-RC 50..442 10..406 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:58 Download gff for BS15006.complete
Subject Subject Range Query Range Percent Splice Strand
CG14464-RC 29..410 17..398 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:30:58 Download gff for BS15006.complete
Subject Subject Range Query Range Percent Splice Strand
2R 4829274..4829493 17..236 100 -> Plus
2R 4829547..4829708 237..398 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:03 Download gff for BS15006.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 716779..716998 17..236 100 -> Plus
arm_2R 717052..717213 237..398 100   Plus

BS15006.pep Sequence

Translation from 16 to 399

> BS15006.pep
MHFSITNSRQDMKPYLDSDYSISRNLRQRHRKKGVSNEYSNYLDSENKKK
GRKKCQNSAYDEYGNIRSNGLDICDCMNQECDGCWYNCRSCGSTRCGPQC
RSNRKFFYEDITYDGKDLNIQNKYIPR*

BS15006.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG14464-PD 116 CG14464-PD 1..116 12..127 659 100 Plus
CG14464-PC 116 CG14464-PC 1..116 12..127 659 100 Plus