Clone Sequence Records
BS15013.3prime Sequence
786 bp (660 high quality bases) assembled on 2006-10-23
> BS15013.3prime
ATGGTCTAGAAAGCTTTTACATCACAAAGACCTTTTCGACCTTGGGGTTG
GAGAACTTCGTATTGGTCACCGGACAGGTGACGGTACCGTCGTCTTTGGT
GATGTCCGGCAGAGCCATCTGACCAAAGATCTGTCCGTTGGGCAGCATCA
TCGGCTGATTGTGCTCGTTGAGCGGCAGCCCTGTGACCCGGCATATAAGA
CGGCTCTGCACACAGTGCGAGTATGGCAACTTGAGAGCGATGCGGTTGAG
ATCCTCCTGACACACCGGGCAGTTAAGGTTACGGCAGGTCTGAGCATAGC
AGTGGGGCGTCTTCAGGGCCGACAGACCGGCCTGCACGGCTGCCGAGAAG
ACGGACGTGCTGGATAGCTGGAAGAGGCGGTAGTTCTCTTGACGGAAGTC
CAACACCAACTTTTGCCACCGCTGCGGATCCATGTACTTGCGGTAGTGCT
CGGCTTGGGCATCGGCCGGATAGGCCAGCAGGGCCATCACGTGGCAGATC
TCATTCAGCTGAGTCTTCTCGTATGCGGGGAAGTAGCGACGCGAATGCTT
CACAGCCTCAAAACGCTGATTTTGACGCACGAGCTCGATGAACTCTTGCA
CCCTCAGGCTGAATTCAATGGTCGAGTTGATCTTGCGGAGCTTAGACTTA
TTGTCTATGCACCAAAGCACGCATTTGGTGGTGCTGTGACTGGCCAAGTC
ATCCTCGACCTCGCGCGACGTCTGAAAAATGTCCAGGTTGGTCAGGTGGC
GCACATCGGACTTGGCGGCCAGCTCCTCGGCCGTTT
BS15013.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:12:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31357-PA | 1185 | CG31357-RA | 416..1185 | 786..17 | 3850 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:22:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31357-RA | 1681 | CG31357-RA | 521..1290 | 786..17 | 3850 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:22:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24828670..24829439 | 17..786 | 3850 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:22:26 has no hits.
BS15013.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:14:32 Download gff for
BS15013.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31357-PA | 416..1185 | 17..786 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:47:10 Download gff for
BS15013.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31357-PA | 416..1185 | 17..786 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:56:29 Download gff for
BS15013.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31357-RA | 521..1292 | 13..786 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:56:02 Download gff for
BS15013.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31357-RA | 521..1292 | 13..786 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:56:02 Download gff for
BS15013.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24828668..24829439 | 13..786 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:56:29 Download gff for
BS15013.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20654390..20655161 | 13..786 | 99 | | Plus |
BS15013.5prime Sequence
830 bp (823 high quality bases) assembled on 2006-10-23
> BS15013.5prime
GAAGTTATCAGTCGACATGTCCGAGATCAAGGCGTTGGAGCACGCCACCC
TAAAAGTGCCATACGAGATGCTGAACAAGCGCTTCCGTTCGGCACAGAAG
ATCATCGACAGGGAGGTGGACCAGGTGATCAATGTATCGCGTCAGGTGGA
AAAGGCCCTAGAAGCAGAGGAGGGTCCCATTCTGGCCGAGGTCACCAAGC
TGGTGGATAACGTAGCGCAGAAATTGCAGGTGCTCAAGCGCAAGGCCGAG
GAGAGCATCAATGATGAGCTGAGCGTCACACAGATCTGCAAGCGCAAGCT
GGACCACCTAAAGGGCATTACACCGCCAAGCAGCGTTACAGGCGACCTGT
GGCAGGGTTCCGTGGACCAATGGAAGCGGATCCGACTAGACCGCCTGGTC
ATCGAGCACCTGCTGCGCATGGGATACTATGAAACGGCCGAGGAGCTGGC
CGCCAAGTCCGATGTGCGCCACCTGACCAACCTGGACATTTTTCAGACGT
CGCGCGAGGTCGAGGATGACTTGGCCAGTCACAGCACCACCAAATGCGTG
CTTTGGTGCATAGACAATAAGTCTAAGCTCCGCAAGATCAACTCGACCAT
TGAATTCAGCCTGAGGGTGCAAGAGTTCATCGAGCTCGTGCGTCAAAATC
AGCGTTTTGAGGCTGTGAAGCATTCGCGTCGCTACTTCCCCGCATACGAG
AAGACTCAGCTGAATGAGATCTGCCACGTGATGGCCCTGCTGGCCTATCC
GGCCGATGCCCAAGCCGAGCACTACCGCAAGTACATGGATCCGCAGCGGT
GGCAAAAGTTGGTGTTGGACTTCCGTCAAG
BS15013.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:12:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31357-PA | 1185 | CG31357-RA | 1..814 | 17..830 | 4070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:36:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31357-RA | 1681 | CG31357-RA | 106..919 | 17..830 | 4070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:36:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24829041..24829854 | 830..17 | 4070 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:36:39 has no hits.
BS15013.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:14:34 Download gff for
BS15013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31357-PA | 1..814 | 17..830 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:47:11 Download gff for
BS15013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31357-PA | 1..814 | 17..830 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:37:39 Download gff for
BS15013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31357-RA | 106..919 | 17..830 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:39:50 Download gff for
BS15013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31357-RA | 106..919 | 17..830 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:39:50 Download gff for
BS15013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24829041..24829854 | 17..830 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:37:39 Download gff for
BS15013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20654763..20655576 | 17..830 | 100 | | Minus |
BS15013.complete Sequence
1217 bp assembled on 2006-11-01
GenBank Submission: FJ637854
> BS15013.complete
GAAGTTATCAGTCGACATGTCCGAGATCAAGGCGTTGGAGCACGCCACCC
TAAAAGTGCCATACGAGATGCTGAACAAGCGCTTCCGTTCGGCACAGAAG
ATCATCGACAGGGAGGTGGACCAGGTGATCAATGTATCGCGTCAGGTGGA
AAAGGCCCTAGAAGCAGAGGAGGGTCCCATTCTGGCCGAGGTCACCAAGC
TGGTGGATAACGTAGCGCAGAAATTGCAGGTGCTCAAGCGCAAGGCCGAG
GAGAGCATCAATGATGAGCTGAGCGTCACACAGATCTGCAAGCGCAAGCT
GGACCACCTAAAGGGCATTACACCGCCAAGCAGCGTTACAGGCGACCTGT
GGCAGGGTTCCGTGGACCAATGGAAGCGGATCCGACTAGACCGCCTGGTC
ATCGAGCACCTGCTGCGCATGGGATACTATGAAACGGCCGAGGAGCTGGC
CGCCAAGTCCGATGTGCGCCACCTGACCAACCTGGACATTTTTCAGACGT
CGCGCGAGGTCGAGGATGACTTGGCCAGTCACAGCACCACCAAATGCGTG
CTTTGGTGCATAGACAATAAGTCTAAGCTCCGCAAGATCAACTCGACCAT
TGAATTCAGCCTGAGGGTGCAAGAGTTCATCGAGCTCGTGCGTCAAAATC
AGCGTTTTGAGGCTGTGAAGCATTCGCGTCGCTACTTCCCCGCATACGAG
AAGACTCAGCTGAATGAGATCTGCCACGTGATGGCCCTGCTGGCCTATCC
GGCCGATGCCCAAGCCGAGCACTACCGCAAGTACATGGATCCGCAGCGGT
GGCAAAAGTTGGTGTTGGACTTCCGTCAAGAGAACTACCGCCTCTTCCAG
CTATCCAGCACGTCCGTCTTCTCGGCAGCCGTGCAGGCCGGTCTGTCGGC
CCTGAAGACGCCCCACTGCTATGCTCAGACCTGCCGTAACCTTAACTGCC
CGGTGTGTCAGGAGGATCTCAACCGCATCGCTCTCAAGTTGCCATACTCG
CACTGTGTGCAGAGCCGTCTTATATGCCGGGTCACAGGGCTGCCGCTCAA
CGAGCACAATCAGCCGATGATGCTGCCCAACGGACAGATCTTTGGTCAGA
TGGCTCTGCCGGACATCACCAAAGACGACGGTACCGTCACCTGTCCGGTG
ACCAATACGAAGTTCTCCAACCCCAAGGTCGAAAAGGTCTTTGTGATGTA
AAAGCTTTCTAGACCAT
BS15013.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:51:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31357-RA | 1185 | CG31357-PA | 1..1185 | 17..1201 | 5925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:51:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31357-RA | 1681 | CG31357-RA | 106..1290 | 17..1201 | 5925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:51:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24828670..24829854 | 1201..17 | 5925 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:51:03 has no hits.
BS15013.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:34:01 Download gff for
BS15013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31357-RA | 1..1185 | 17..1201 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:06:44 Download gff for
BS15013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31357-RA | 70..1256 | 17..1205 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:03:23 Download gff for
BS15013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31357-RA | 106..1288 | 17..1199 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:34:02 Download gff for
BS15013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31357-RA | 70..1256 | 17..1205 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:32:59 Download gff for
BS15013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31357-RA | 106..1288 | 17..1199 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:32:59 Download gff for
BS15013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24828672..24829854 | 17..1199 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:03:23 Download gff for
BS15013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20654394..20655576 | 17..1199 | 100 | | Minus |
BS15013.pep Sequence
Translation from 16 to 1200
> BS15013.pep
MSEIKALEHATLKVPYEMLNKRFRSAQKIIDREVDQVINVSRQVEKALEA
EEGPILAEVTKLVDNVAQKLQVLKRKAEESINDELSVTQICKRKLDHLKG
ITPPSSVTGDLWQGSVDQWKRIRLDRLVIEHLLRMGYYETAEELAAKSDV
RHLTNLDIFQTSREVEDDLASHSTTKCVLWCIDNKSKLRKINSTIEFSLR
VQEFIELVRQNQRFEAVKHSRRYFPAYEKTQLNEICHVMALLAYPADAQA
EHYRKYMDPQRWQKLVLDFRQENYRLFQLSSTSVFSAAVQAGLSALKTPH
CYAQTCRNLNCPVCQEDLNRIALKLPYSHCVQSRLICRVTGLPLNEHNQP
MMLPNGQIFGQMALPDITKDDGTVTCPVTNTKFSNPKVEKVFVM*
BS15013.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:29:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31357-PA | 394 | CG31357-PA | 1..394 | 1..394 | 2042 | 100 | Plus |
| CG3295-PA | 432 | CG3295-PA | 73..334 | 40..296 | 158 | 23.3 | Plus |
