Clone Sequence Records
BS15014.complete Sequence
2264 bp assembled on 2009-12-07
GenBank Submission: KX806246
> BS15014.complete
GAAGTTATCAGTCGACATGGCCCAGCCATCGGTAGCTGCATTTTTCACAA
ACCGCAAACGCGCCGCCTTGGATGATGCTATCAGTATCAAGAACAGGCGT
TTGGTGGAACCCGCTGAAACCGTCTCTCCTGCCTCCGCCCCTTCCCAGTT
GCCAGCCGGCGACCAGGATGCGGATCTAGACACCCTGAAGGCGGCGGCCA
CGGGCATGCGTACCCGATCCGGACGCACTGCCCGACTAATTGTCACCGCC
GCTCAAGAGAGCAAAAAGAAGACACCGGCTGCCGCCAAGATGGAGCCACA
CATCAAGCAGCCCAAGCTGGTGCAATTCATTAAAAAGGGCACTCTGTCGC
CCAGGAAACAGGCTCAGTCCAGTAAGCTGGACGAGGAGGAGCTGCAGCAG
TCGTCGGCCATAAGCGAGCACACGCCCAAGGTTAACTTCACCATCACAAG
CCAGCAGAATGCGGACAATGTGCAGCGTGGCCTGCGCACACCCACCAAGC
AGATCCTCAAGGATGCCTCGCCGATCAAGGCGGATCTCCGCCGTCAGCTC
ACTTTCGACGAGGTAAAAACGAAGGTATCGCGGAGTGCCAAGCTGCAGGA
ACTCAAGGCAGTGCTGGCCCTTAAGGCGGCGCTCGAGCAGAAGCGCAAGG
AGCAGGAGGAGCGCAACAGGAAACTCCGCGACGCTGGCCCCTCCCCATCG
AAGTCCAAGATGAGCGTGCAGCTCAAGGAATTCGACACAATCGAACTGGA
GGTGCTTATAAGCCCTTTGAAGACCTTCAAGACTCCCACAAAAATACCGC
CACCCACCCCGGACAAACATGAGCTTATGTCGCCGCGTCACACTGACGTC
TCCAAGCGCCTTCTCTTCAGTCCGGCCAAAAATGGATCTCCTGTCAAATT
GGTGGAGGTGCCGGCTTATAAGCGCTACGCCAGTCTGGTGGAAAGCAGCC
GCGCCGGCCAACTTCCATTGCCTTATAAGTACCGACACCTGTTGGACGTG
TTCAAGGGTCTCGATTCCGTGGTGGCCATGTTTCACAACCGCAAGGAGAC
CATCACATTCAAGAAGCTTAAGCCGGCAGTGCAGCGCATGCTCCGGAAGA
ACTTCACTGAGACCCATTTGGCCCAGATCAAGCACATCTATCCAGACGCA
TTTATCTTCAGTCAGGTGAAGACGCGCAATTTCGGTTCTGTCTCCAAAGC
GGACTATTTCCAGCTGATCATCGCTCCCAATGTGGAGCCACTGCCCGAGC
AACAGCAATCGGAGAAGCCACAACATTTCACCAAGATCAACGAAGACGAT
GTGCTCGCGTCGGCCCAGTCGACGTCCATGAATCCACACGTTATGACGGC
GCGCATGCAGCGCTTTCAGAGCCTTCTGCTCGATCGGGCAATGCGGGCGC
ACGACCAGTTCCTTCGCTCCCAGGATCCGCCGATCATCATCGAAAAGGCG
CTGACTCGCTGGCATCCGCAGTTTGATTTGGAGAGTTGTCCGGAAGTGGA
GCTGTCCCCTTTGCCGCAGCCGCCCAATGTCGAGAAATACTCGTCAGCTA
AGGATATTCTGTCTACCGCTCGAAATCTCTTCAATTGCGCCACGCCCATG
GAGAGAGCAATGGATCGCTATGAGGCCAAGTTGGAGTCGGAAAAACAGCA
AGCAGCTGAAAGCAATAAAAAGACGGAGGAACAGCAGGCAGGAGAAGTTA
CCAGGACAAGTACAGCGATTCAAACCAGTCAGGAGGTGCCTGGAATATCT
GGATCATCGAAAAACCCAACTGTCCCTGAAACAACAAACCAAACAGAAAC
TGCCAAGCCCACCGTGAAGGATTGCACAGTGCCAGATGCCAGCTCCAATC
TACTGAAGGGACTGCCAAAATCACTGATCGAGAAAATTCGAGCCAAACAG
GCAGCAAAGGCTTTGGAGGCGATGACTCGACGTCCTTCGCAGGACCAGGA
GGCCACGAAGTACTCACGTTTGCCCGAATTGGCCAGACACCTGCGCAATG
TCTTCGTTACCGAGCGTAAAGGAGTGCTCACCCTGGAAGTAATCATCAAG
AAGATCCAGAACAGCTTCCGGGCGAACCTCACACCGCAGGAAATTGAGGC
GCATCTGAAACTACTTGCCAAGGAGCTACCCAGCTGGGCTTCCTTTCATG
AAGTGCGCAAGACCATGTACCTCAAGGTTGCCAAGGACATGGACATGAAC
AAGATCATCGAGAAGCTGGAGAGCGTGGCTAACGCCAAGAGCAATTAGAA
GCTTTCTAGACCAT
BS15014.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:27:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dup-RB | 2232 | CG8171-PB | 1..2232 | 17..2248 | 11160 | 100 | Plus |
| dup-RA | 2232 | CG8171-PA | 1..2232 | 17..2248 | 11160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:27:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dup-RB | 2764 | CG8171-RB | 216..2448 | 17..2249 | 11165 | 100 | Plus |
| dup-RA | 3138 | CG8171-RA | 590..2822 | 17..2249 | 11165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:27:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15376935..15378423 | 2249..761 | 7445 | 100 | Minus |
| 2R | 25286936 | 2R | 15379557..15380222 | 762..97 | 3330 | 100 | Minus |
| 2R | 25286936 | 2R | 15380319..15380399 | 97..17 | 405 | 100 | Minus |
| 2R | 25286936 | 2R | 15375035..15375106 | 1570..1499 | 225 | 87.5 | Minus |
| 2R | 25286936 | 2R | 15374067..15374140 | 1570..1499 | 185 | 86.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:27:23 has no hits.
BS15014.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:12 Download gff for
BS15014.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dup-RA | 562..2793 | 17..2248 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:36 Download gff for
BS15014.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dup-RA | 590..2821 | 17..2248 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:21:28 Download gff for
BS15014.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dup-RA | 562..2793 | 17..2248 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:11:48 Download gff for
BS15014.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dup-RA | 590..2821 | 17..2248 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:11:48 Download gff for
BS15014.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15376936..15378421 | 763..2248 | 100 | <- | Minus |
| 2R | 15379557..15380221 | 98..762 | 100 | <- | Minus |
| 2R | 15380319..15380399 | 17..97 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:36 Download gff for
BS15014.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11264441..11265926 | 763..2248 | 100 | <- | Minus |
| arm_2R | 11267062..11267726 | 98..762 | 100 | <- | Minus |
| arm_2R | 11267824..11267904 | 17..97 | 100 | | Minus |
BS15014.3prime Sequence
801 bp (769 high quality bases) assembled on 2006-10-23
> BS15014.3prime
ATGGTCTAGAAAGCTTCTAATTGCTCTTGGCGTTAGCCACGCTCTCCAGC
TTCTCGATGATCTTGTTCATGTCCATGTCCTTGGCAACCTTGAGGTACAT
GGTCTTGCGCACTTCATGAAAGGAAGCCCAGCTGGGTAGCTCCTTGGCAA
GTAGTTTCAGATGCGCCTCAATTTCCTGCGGTGTGAGGTTCGCCCGGAAG
CTGTTCTGGATCTTCTTGATGATTACTTCCAGGGTGAGCACTCCTTTACG
CTCGGTAACGAAGACATTGCGCAGGTGTCTGGCCAATTCGGGCAAACGTG
AGTACTTCGTGGCCTCCTGGTCCTGCGAAGGACGTCGAGTCATCGCCTCC
AAAGCCTTTGCTGCCTGTTTGGCTCGAATTTTCTCGATCAGTGATTTTGG
CAGTCCCTTCAGTAGATTGGAGCTGGCATCTGGCACTGTGCAATCCTTCA
CGGTGGGCTTGGCAGTTTCTGTTTGGTTTGTTGTTTCAGGGACAGTTGGG
TTTTTCGATGATCCAGATATTCCAGGCACCTCCTGACTGGTTTGAATCGC
TGTACTTGTCCTGGTAACTTCTCCTGCCTGCTGTTCCTCCGTCTTTTTAT
TGCTTTCAGCTGCTTGCTGTTTTTCCGACTCCAACTTGGCCTCATAGCGA
TCCATTGCTCTCTCCATGGGCGTGGCGCAATTGAAGAGATTTCGAGCGGT
AGACAGAATATCCTTAGCTGACGAGTATTTCTCGACATTGGGCGGCTGCG
GCAAAGGGGACAGCTCCACTTCCGGACAACTCTCCAAATCAAACTGCGGA
T
BS15014.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:12:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8171-PA | 2232 | dup-RA | 1448..2232 | 801..17 | 3925 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:05:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dup-RB | 2764 | CG8171-RB | 1663..2448 | 801..16 | 3930 | 100 | Minus |
| dup-RA | 3138 | CG8171-RA | 2037..2822 | 801..16 | 3930 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:05:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15376935..15377720 | 16..801 | 3930 | 100 | Plus |
| 2R | 25286936 | 2R | 15375035..15375106 | 695..766 | 225 | 87.5 | Plus |
| 2R | 25286936 | 2R | 15374067..15374140 | 695..766 | 185 | 86.5 | Plus |
Blast to na_te.dros performed 2015-02-11 23:05:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 412 | 7567 | 412 412 7567bp | 5094..5170 | 611..534 | 117 | 62.8 | Minus |
| Dm88 | 4558 | Dm88 DM88 4558bp | 1926..1997 | 623..538 | 112 | 65.1 | Minus |
| Stalker2 | 7672 | Stalker2 STALKER2 7672bp | 5197..5273 | 611..534 | 108 | 61.5 | Minus |
BS15014.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:14:35 Download gff for
BS15014.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dup-PA | 1448..2232 | 17..801 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:47:13 Download gff for
BS15014.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8171-PA | 1448..2232 | 17..801 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:35:08 Download gff for
BS15014.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dup-RA | 2037..2822 | 16..801 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:27:33 Download gff for
BS15014.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dup-RA | 2037..2822 | 16..801 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:27:33 Download gff for
BS15014.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15376935..15377720 | 16..801 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:35:08 Download gff for
BS15014.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11264440..11265225 | 16..801 | 100 | | Plus |
BS15014.5prime Sequence
868 bp (829 high quality bases) assembled on 2006-10-23
> BS15014.5prime
GAAGTTATCCGTCGACATGGCCCAGCCATCGGTAGCTGCATTTTTCACAA
ACCGCAAACGCGCCGCCTTGGATGATGCTATCAGTATCAAGAACAGGCGT
TTGGTGGAACCCGCTGAAACCGTCTCTCCTGCCTCCGCCCCTTCCCAGTT
GCCAGCCGGCGACCAGGATGCGGATCTAGACACCCTGAAGGCGGCGGCCA
CGGGCATGCGTACCCGATCCGGACGCACTGCCCGACTAATTGTCACCGCC
GCTCAAGAGAGCAAAAAGAAGACACCGGCTGCCGCCAAGATGGAGCCACA
CATCAAGCAGCCCAAGCTGGTGCAATTCATTAAAAAGGGCACTCTGTCGC
CCAGGAAACAGGCTCAGTCCAGTAAGCTGGACGAGGAGGAGCTGCAGCAG
TCGTCGGCCATAAGCGAGCACACGCCCAAGGTTAACTTCACCATCACAAG
CCAGCAGAATGCGGACAATGTGCAGCGTGGCCTGCGCACACCCACCAAGC
AGATCCTCAAGGATGCCTCGCCGATCAAGGCGGATCTCCGCCGTCAGCTC
ACTTTCGACGAGGTAAAAACGAAGGTATCGCGGAGTGCCAAGCTGCAGGA
ACTCAAGGCAGTGCTGGCCCTTAAGGCGGCGCTCGAGCAGAAGCGCAAGG
AGCAGGAGGAGCGCAACAGGAAACTCCGCGACGCTGGCCCCTCCCCATCG
AAGTCCAAGATGAGCGTGCAGCTCAAGGAATTCGACACAATCGAACTGGA
GGTGCTTATAAGCCCTTTGAAGACCTTCAAGACTCCCACAAAAATACCGC
CACCCACCCCCGACAAACATGAGCTTATGTCGCCGCGTCACACTGACGTC
TCCAAGCGCCTTCTCTTC
BS15014.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:12:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8171-PA | 2232 | dup-RA | 1..852 | 17..868 | 4235 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:36:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dup-RB | 2764 | CG8171-RB | 216..1067 | 17..868 | 4245 | 99.9 | Plus |
| dup-RA | 3138 | CG8171-RA | 590..1441 | 17..868 | 4245 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:36:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15379557..15380222 | 762..97 | 3330 | 100 | Minus |
| 2R | 25286936 | 2R | 15378316..15378423 | 868..761 | 525 | 99.1 | Minus |
| 2R | 25286936 | 2R | 15380319..15380399 | 97..17 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:36:57 has no hits.
BS15014.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:14:36 Download gff for
BS15014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dup-PA | 1..852 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:47:14 Download gff for
BS15014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8171-PA | 1..852 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:37:45 Download gff for
BS15014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dup-RA | 590..1441 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:43:09 Download gff for
BS15014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dup-RA | 590..1441 | 17..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:43:09 Download gff for
BS15014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15378316..15378421 | 763..868 | 99 | <- | Minus |
| 2R | 15379557..15380221 | 98..762 | 100 | <- | Minus |
| 2R | 15380319..15380399 | 17..97 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:37:45 Download gff for
BS15014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11265821..11265926 | 763..868 | 99 | <- | Minus |
| arm_2R | 11267062..11267726 | 98..762 | 100 | <- | Minus |
| arm_2R | 11267824..11267904 | 17..97 | 100 | | Minus |
BS15014.pep Sequence
Translation from 16 to 2247
> BS15014.pep
MAQPSVAAFFTNRKRAALDDAISIKNRRLVEPAETVSPASAPSQLPAGDQ
DADLDTLKAAATGMRTRSGRTARLIVTAAQESKKKTPAAAKMEPHIKQPK
LVQFIKKGTLSPRKQAQSSKLDEEELQQSSAISEHTPKVNFTITSQQNAD
NVQRGLRTPTKQILKDASPIKADLRRQLTFDEVKTKVSRSAKLQELKAVL
ALKAALEQKRKEQEERNRKLRDAGPSPSKSKMSVQLKEFDTIELEVLISP
LKTFKTPTKIPPPTPDKHELMSPRHTDVSKRLLFSPAKNGSPVKLVEVPA
YKRYASLVESSRAGQLPLPYKYRHLLDVFKGLDSVVAMFHNRKETITFKK
LKPAVQRMLRKNFTETHLAQIKHIYPDAFIFSQVKTRNFGSVSKADYFQL
IIAPNVEPLPEQQQSEKPQHFTKINEDDVLASAQSTSMNPHVMTARMQRF
QSLLLDRAMRAHDQFLRSQDPPIIIEKALTRWHPQFDLESCPEVELSPLP
QPPNVEKYSSAKDILSTARNLFNCATPMERAMDRYEAKLESEKQQAAESN
KKTEEQQAGEVTRTSTAIQTSQEVPGISGSSKNPTVPETTNQTETAKPTV
KDCTVPDASSNLLKGLPKSLIEKIRAKQAAKALEAMTRRPSQDQEATKYS
RLPELARHLRNVFVTERKGVLTLEVIIKKIQNSFRANLTPQEIEAHLKLL
AKELPSWASFHEVRKTMYLKVAKDMDMNKIIEKLESVANAKSN*
BS15014.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:04:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dup-PB | 743 | CG8171-PB | 1..743 | 1..743 | 3731 | 100 | Plus |
| dup-PA | 743 | CG8171-PA | 1..743 | 1..743 | 3731 | 100 | Plus |
