Clone BS15018 Report

Search the DGRC for BS15018

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:150
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptPpcdc-RA
Protein status:BS15018.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15018.3prime Sequence

606 bp (606 high quality bases) assembled on 2006-10-23

> BS15018.3prime
ATGGTCTAGAAAGCTTCTATTTAATCGGCTGAAAGGCGGATAACACCGCT
TCCACAATTGTGGGTACCTCCGCCATGGCGCCGTTGCCAGTATCACCGCA
CATCAGAGTCTTGGATATGCAGGGTATCTCCTTGTAGCCCCAACTGGTCA
GCTTGTCGATCTGCTCCCGAGTTATTGGATGGTCGTACATACGGGTATTC
ATCGCAGGTGCAAAGAGCAGCGGCTTCTCAAGGTCCCAGGCCCGCACCAC
ACACATGACGATATTATCGCAAATCCCGGTGGCCATTTTGGACAGAGAGT
TTGCGCTGAGTGGGGCTATTACCAACAAATCCGCCCACTTGCCTAGATCT
ATGTGGAGTACAGGATCTCCTCGCTTGTTCCAGGTGATCCACTCGTCGCG
ATTGTGGTAAATGGGTACATTTTCGGGAATCTGCTCCAGTTCAAAGAAGT
GTTTGGCTGCTTCGGTAATAAGTACTTTCAGGTGGAACTTAAAGGGTAGG
CGCTCGTCGGAGAGCTCTCGGATTAACTGGGCTAACTTAATGGTGGCCAC
ACTTCCGGTGGCCGCTATCATCACATTACGTTCGGGTTTCATGTCGACTG
ATAACT

BS15018.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:12:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG30290-PA 576 CG30290-RA 1..576 592..17 2880 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:07:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG42496-RB 1117 CG42496-RB 469..1045 593..17 2885 100 Minus
CG42496-RA 1064 CG42496-RA 416..992 593..17 2885 100 Minus
Ppcdc-RB 1117 CG30290-RB 469..1045 593..17 2885 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:06:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21692432..21692692 277..17 1305 100 Minus
2R 25286936 2R 21691995..21692170 593..418 880 100 Minus
2R 25286936 2R 21692234..21692375 418..277 710 100 Minus
Blast to na_te.dros performed on 2015-02-13 07:07:00 has no hits.

BS15018.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:14:44 Download gff for BS15018.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30290-PA 1..576 17..592 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:47:26 Download gff for BS15018.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30290-PA 1..576 17..592 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:50:30 Download gff for BS15018.3prime
Subject Subject Range Query Range Percent Splice Strand
Ppcdc-RB 466..1045 17..599 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:25:29 Download gff for BS15018.3prime
Subject Subject Range Query Range Percent Splice Strand
Ppcdc-RB 466..1045 17..599 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:25:29 Download gff for BS15018.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21691992..21692170 418..599 98 -> Minus
2R 21692235..21692374 278..417 100 -> Minus
2R 21692432..21692692 17..277 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:50:30 Download gff for BS15018.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17579497..17579675 418..599 98 -> Minus
arm_2R 17579740..17579879 278..417 100 -> Minus
arm_2R 17579937..17580197 17..277 100   Minus

BS15018.5prime Sequence

606 bp (606 high quality bases) assembled on 2006-10-23

> BS15018.5prime
GAAGTTATCCTTCGACATGAAACCCGAACGTAATGTGATGATAGCGGCCA
CCGGAAGTGTGGCCACCATTAAGTTAGCCCAGTTAATCCGAGAGCTCTCC
GACGAGCGCCTACCCTTTAAGTTCCACCTGAAAGTACTTATTACCGAAGC
AGCCAAACACTTCTTTGAACTGGAGCAGATTCCCGAAAATGTACCCATTT
ACCACAATCGCGACGAGTGGATCACCTGGAACAAGCGAGGAGATCCTGTA
CTCCACATAGATCTAGGCAAGTGGGCGGATTTGTTGGTAATAGCCCCACT
CAGCGCAAACTCTCTGTCCAAAATGGCCACCGGGATTTGCGATAATATCG
TCATGTGTGTGGTGCGGGCCTGGGACCTTGAGAAGCCGCTGCTCTTTGCA
CCTGCGATGAATACCCGTATGTACGACCATCCAATAACTCGGGAGCAGAT
CGACAAGCTGACCAGTTGGGGCTACAAGGAGATACCCTGCATATCCAAGA
CTCTGATGTGCGGTGATACTGGCAACGGCGCCATGGCGGAGGTACCCACA
ATTGTGGAAGCGGTGTTATCCGCCTTTCAGCCGATTAAATAGAAGCTTTC
TAGACC

BS15018.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:12:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG30290-PA 576 CG30290-RA 1..576 17..592 2880 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:37:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG42496-RB 1117 CG42496-RB 469..1045 16..592 2885 100 Plus
CG42496-RA 1064 CG42496-RA 416..992 16..592 2885 100 Plus
Ppcdc-RB 1117 CG30290-RB 469..1045 16..592 2885 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:37:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21692432..21692692 332..592 1305 100 Plus
2R 25286936 2R 21691995..21692170 16..191 880 100 Plus
2R 25286936 2R 21692234..21692375 191..332 710 100 Plus
Blast to na_te.dros performed on 2015-02-13 12:37:34 has no hits.

BS15018.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:14:45 Download gff for BS15018.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30290-PA 1..576 17..592 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:47:28 Download gff for BS15018.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30290-PA 1..576 17..592 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:03:10 Download gff for BS15018.5prime
Subject Subject Range Query Range Percent Splice Strand
Ppcdc-RB 469..1045 16..592 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:16:51 Download gff for BS15018.5prime
Subject Subject Range Query Range Percent Splice Strand
Ppcdc-RB 469..1045 16..592 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:16:51 Download gff for BS15018.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21691995..21692170 16..191 100 -> Plus
2R 21692235..21692374 192..331 100 -> Plus
2R 21692432..21692692 332..592 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:03:10 Download gff for BS15018.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17579500..17579675 16..191 100 -> Plus
arm_2R 17579740..17579879 192..331 100 -> Plus
arm_2R 17579937..17580197 332..592 100   Plus

BS15018.complete Sequence

608 bp assembled on 2006-11-01

GenBank Submission: FJ637856

> BS15018.complete
GAAGTTATCAGTCGACATGAAACCCGAACGTAATGTGATGATAGCGGCCA
CCGGAAGTGTGGCCACCATTAAGTTAGCCCAGTTAATCCGAGAGCTCTCC
GACGAGCGCCTACCCTTTAAGTTCCACCTGAAAGTACTTATTACCGAAGC
AGCCAAACACTTCTTTGAACTGGAGCAGATTCCCGAAAATGTACCCATTT
ACCACAATCGCGACGAGTGGATCACCTGGAACAAGCGAGGAGATCCTGTA
CTCCACATAGATCTAGGCAAGTGGGCGGATTTGTTGGTAATAGCCCCACT
CAGCGCAAACTCTCTGTCCAAAATGGCCACCGGGATTTGCGATAATATCG
TCATGTGTGTGGTGCGGGCCTGGGACCTTGAGAAGCCGCTGCTCTTTGCA
CCTGCGATGAATACCCGTATGTACGACCATCCAATAACTCGGGAGCAGAT
CGACAAGCTGACCAGTTGGGGCTACAAGGAGATACCCTGCATATCCAAGA
CTCTGATGTGCGGTGATACTGGCAACGGCGCCATGGCGGAGGTACCCACA
ATTGTGGAAGCGGTGTTATCCGCCTTTCAGCCGATTAAATAGAAGCTTTC
TAGACCAT

BS15018.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:05:17
Subject Length Description Subject Range Query Range Score Percent Strand
Ppcdc-RB 576 CG30290-PB 1..576 17..592 2880 100 Plus
Ppcdc-RA 576 CG30290-PA 1..576 17..592 2880 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:05:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG42496-RB 1117 CG42496-RB 469..1045 16..592 2885 100 Plus
CG42496-RA 1064 CG42496-RA 416..992 16..592 2885 100 Plus
Ppcdc-RB 1117 CG30290-RB 469..1045 16..592 2885 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:05:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21692432..21692692 332..592 1305 100 Plus
2R 25286936 2R 21691995..21692170 16..191 880 100 Plus
2R 25286936 2R 21692234..21692375 191..332 710 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:05:16 has no hits.

BS15018.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:25 Download gff for BS15018.complete
Subject Subject Range Query Range Percent Splice Strand
CG30290-RA 1..576 17..592 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:53:15 Download gff for BS15018.complete
Subject Subject Range Query Range Percent Splice Strand
CG30290-RA 403..982 10..592 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:51:59 Download gff for BS15018.complete
Subject Subject Range Query Range Percent Splice Strand
Ppcdc-RB 470..1039 17..586 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:25 Download gff for BS15018.complete
Subject Subject Range Query Range Percent Splice Strand
CG30290-RA 403..982 10..592 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:10:56 Download gff for BS15018.complete
Subject Subject Range Query Range Percent Splice Strand
Ppcdc-RB 470..1039 17..586 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:10:56 Download gff for BS15018.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21691996..21692170 17..191 100 -> Plus
2R 21692235..21692374 192..331 100 -> Plus
2R 21692432..21692686 332..586 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:51:59 Download gff for BS15018.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17579501..17579675 17..191 100 -> Plus
arm_2R 17579740..17579879 192..331 100 -> Plus
arm_2R 17579937..17580191 332..586 100   Plus

BS15018.pep Sequence

Translation from 16 to 591

> BS15018.pep
MKPERNVMIAATGSVATIKLAQLIRELSDERLPFKFHLKVLITEAAKHFF
ELEQIPENVPIYHNRDEWITWNKRGDPVLHIDLGKWADLLVIAPLSANSL
SKMATGICDNIVMCVVRAWDLEKPLLFAPAMNTRMYDHPITREQIDKLTS
WGYKEIPCISKTLMCGDTGNGAMAEVPTIVEAVLSAFQPIK*

BS15018.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:36:08
Subject Length Description Subject Range Query Range Score Percent Strand
Ppcdc-PB 191 CG30290-PB 1..191 1..191 1005 100 Plus
Ppcdc-PA 191 CG30290-PA 1..191 1..191 1005 100 Plus