Clone Sequence Records
BS15018.3prime Sequence
606 bp (606 high quality bases) assembled on 2006-10-23
> BS15018.3prime
ATGGTCTAGAAAGCTTCTATTTAATCGGCTGAAAGGCGGATAACACCGCT
TCCACAATTGTGGGTACCTCCGCCATGGCGCCGTTGCCAGTATCACCGCA
CATCAGAGTCTTGGATATGCAGGGTATCTCCTTGTAGCCCCAACTGGTCA
GCTTGTCGATCTGCTCCCGAGTTATTGGATGGTCGTACATACGGGTATTC
ATCGCAGGTGCAAAGAGCAGCGGCTTCTCAAGGTCCCAGGCCCGCACCAC
ACACATGACGATATTATCGCAAATCCCGGTGGCCATTTTGGACAGAGAGT
TTGCGCTGAGTGGGGCTATTACCAACAAATCCGCCCACTTGCCTAGATCT
ATGTGGAGTACAGGATCTCCTCGCTTGTTCCAGGTGATCCACTCGTCGCG
ATTGTGGTAAATGGGTACATTTTCGGGAATCTGCTCCAGTTCAAAGAAGT
GTTTGGCTGCTTCGGTAATAAGTACTTTCAGGTGGAACTTAAAGGGTAGG
CGCTCGTCGGAGAGCTCTCGGATTAACTGGGCTAACTTAATGGTGGCCAC
ACTTCCGGTGGCCGCTATCATCACATTACGTTCGGGTTTCATGTCGACTG
ATAACT
BS15018.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:12:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30290-PA | 576 | CG30290-RA | 1..576 | 592..17 | 2880 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:07:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42496-RB | 1117 | CG42496-RB | 469..1045 | 593..17 | 2885 | 100 | Minus |
CG42496-RA | 1064 | CG42496-RA | 416..992 | 593..17 | 2885 | 100 | Minus |
Ppcdc-RB | 1117 | CG30290-RB | 469..1045 | 593..17 | 2885 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:06:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21692432..21692692 | 277..17 | 1305 | 100 | Minus |
2R | 25286936 | 2R | 21691995..21692170 | 593..418 | 880 | 100 | Minus |
2R | 25286936 | 2R | 21692234..21692375 | 418..277 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:07:00 has no hits.
BS15018.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:14:44 Download gff for
BS15018.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30290-PA | 1..576 | 17..592 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:47:26 Download gff for
BS15018.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30290-PA | 1..576 | 17..592 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:50:30 Download gff for
BS15018.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppcdc-RB | 466..1045 | 17..599 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:25:29 Download gff for
BS15018.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppcdc-RB | 466..1045 | 17..599 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:25:29 Download gff for
BS15018.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21691992..21692170 | 418..599 | 98 | -> | Minus |
2R | 21692235..21692374 | 278..417 | 100 | -> | Minus |
2R | 21692432..21692692 | 17..277 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:50:30 Download gff for
BS15018.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17579497..17579675 | 418..599 | 98 | -> | Minus |
arm_2R | 17579740..17579879 | 278..417 | 100 | -> | Minus |
arm_2R | 17579937..17580197 | 17..277 | 100 | | Minus |
BS15018.5prime Sequence
606 bp (606 high quality bases) assembled on 2006-10-23
> BS15018.5prime
GAAGTTATCCTTCGACATGAAACCCGAACGTAATGTGATGATAGCGGCCA
CCGGAAGTGTGGCCACCATTAAGTTAGCCCAGTTAATCCGAGAGCTCTCC
GACGAGCGCCTACCCTTTAAGTTCCACCTGAAAGTACTTATTACCGAAGC
AGCCAAACACTTCTTTGAACTGGAGCAGATTCCCGAAAATGTACCCATTT
ACCACAATCGCGACGAGTGGATCACCTGGAACAAGCGAGGAGATCCTGTA
CTCCACATAGATCTAGGCAAGTGGGCGGATTTGTTGGTAATAGCCCCACT
CAGCGCAAACTCTCTGTCCAAAATGGCCACCGGGATTTGCGATAATATCG
TCATGTGTGTGGTGCGGGCCTGGGACCTTGAGAAGCCGCTGCTCTTTGCA
CCTGCGATGAATACCCGTATGTACGACCATCCAATAACTCGGGAGCAGAT
CGACAAGCTGACCAGTTGGGGCTACAAGGAGATACCCTGCATATCCAAGA
CTCTGATGTGCGGTGATACTGGCAACGGCGCCATGGCGGAGGTACCCACA
ATTGTGGAAGCGGTGTTATCCGCCTTTCAGCCGATTAAATAGAAGCTTTC
TAGACC
BS15018.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:12:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30290-PA | 576 | CG30290-RA | 1..576 | 17..592 | 2880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:37:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42496-RB | 1117 | CG42496-RB | 469..1045 | 16..592 | 2885 | 100 | Plus |
CG42496-RA | 1064 | CG42496-RA | 416..992 | 16..592 | 2885 | 100 | Plus |
Ppcdc-RB | 1117 | CG30290-RB | 469..1045 | 16..592 | 2885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:37:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21692432..21692692 | 332..592 | 1305 | 100 | Plus |
2R | 25286936 | 2R | 21691995..21692170 | 16..191 | 880 | 100 | Plus |
2R | 25286936 | 2R | 21692234..21692375 | 191..332 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:37:34 has no hits.
BS15018.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:14:45 Download gff for
BS15018.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30290-PA | 1..576 | 17..592 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:47:28 Download gff for
BS15018.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30290-PA | 1..576 | 17..592 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:03:10 Download gff for
BS15018.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppcdc-RB | 469..1045 | 16..592 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:16:51 Download gff for
BS15018.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppcdc-RB | 469..1045 | 16..592 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:16:51 Download gff for
BS15018.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21691995..21692170 | 16..191 | 100 | -> | Plus |
2R | 21692235..21692374 | 192..331 | 100 | -> | Plus |
2R | 21692432..21692692 | 332..592 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:03:10 Download gff for
BS15018.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17579500..17579675 | 16..191 | 100 | -> | Plus |
arm_2R | 17579740..17579879 | 192..331 | 100 | -> | Plus |
arm_2R | 17579937..17580197 | 332..592 | 100 | | Plus |
BS15018.complete Sequence
608 bp assembled on 2006-11-01
GenBank Submission: FJ637856
> BS15018.complete
GAAGTTATCAGTCGACATGAAACCCGAACGTAATGTGATGATAGCGGCCA
CCGGAAGTGTGGCCACCATTAAGTTAGCCCAGTTAATCCGAGAGCTCTCC
GACGAGCGCCTACCCTTTAAGTTCCACCTGAAAGTACTTATTACCGAAGC
AGCCAAACACTTCTTTGAACTGGAGCAGATTCCCGAAAATGTACCCATTT
ACCACAATCGCGACGAGTGGATCACCTGGAACAAGCGAGGAGATCCTGTA
CTCCACATAGATCTAGGCAAGTGGGCGGATTTGTTGGTAATAGCCCCACT
CAGCGCAAACTCTCTGTCCAAAATGGCCACCGGGATTTGCGATAATATCG
TCATGTGTGTGGTGCGGGCCTGGGACCTTGAGAAGCCGCTGCTCTTTGCA
CCTGCGATGAATACCCGTATGTACGACCATCCAATAACTCGGGAGCAGAT
CGACAAGCTGACCAGTTGGGGCTACAAGGAGATACCCTGCATATCCAAGA
CTCTGATGTGCGGTGATACTGGCAACGGCGCCATGGCGGAGGTACCCACA
ATTGTGGAAGCGGTGTTATCCGCCTTTCAGCCGATTAAATAGAAGCTTTC
TAGACCAT
BS15018.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:05:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ppcdc-RB | 576 | CG30290-PB | 1..576 | 17..592 | 2880 | 100 | Plus |
Ppcdc-RA | 576 | CG30290-PA | 1..576 | 17..592 | 2880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:05:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42496-RB | 1117 | CG42496-RB | 469..1045 | 16..592 | 2885 | 100 | Plus |
CG42496-RA | 1064 | CG42496-RA | 416..992 | 16..592 | 2885 | 100 | Plus |
Ppcdc-RB | 1117 | CG30290-RB | 469..1045 | 16..592 | 2885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:05:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21692432..21692692 | 332..592 | 1305 | 100 | Plus |
2R | 25286936 | 2R | 21691995..21692170 | 16..191 | 880 | 100 | Plus |
2R | 25286936 | 2R | 21692234..21692375 | 191..332 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:05:16 has no hits.
BS15018.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:25 Download gff for
BS15018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30290-RA | 1..576 | 17..592 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:53:15 Download gff for
BS15018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30290-RA | 403..982 | 10..592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:51:59 Download gff for
BS15018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppcdc-RB | 470..1039 | 17..586 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:25 Download gff for
BS15018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30290-RA | 403..982 | 10..592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:10:56 Download gff for
BS15018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppcdc-RB | 470..1039 | 17..586 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:10:56 Download gff for
BS15018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21691996..21692170 | 17..191 | 100 | -> | Plus |
2R | 21692235..21692374 | 192..331 | 100 | -> | Plus |
2R | 21692432..21692686 | 332..586 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:51:59 Download gff for
BS15018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17579501..17579675 | 17..191 | 100 | -> | Plus |
arm_2R | 17579740..17579879 | 192..331 | 100 | -> | Plus |
arm_2R | 17579937..17580191 | 332..586 | 100 | | Plus |
BS15018.pep Sequence
Translation from 16 to 591
> BS15018.pep
MKPERNVMIAATGSVATIKLAQLIRELSDERLPFKFHLKVLITEAAKHFF
ELEQIPENVPIYHNRDEWITWNKRGDPVLHIDLGKWADLLVIAPLSANSL
SKMATGICDNIVMCVVRAWDLEKPLLFAPAMNTRMYDHPITREQIDKLTS
WGYKEIPCISKTLMCGDTGNGAMAEVPTIVEAVLSAFQPIK*
BS15018.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:36:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ppcdc-PB | 191 | CG30290-PB | 1..191 | 1..191 | 1005 | 100 | Plus |
Ppcdc-PA | 191 | CG30290-PA | 1..191 | 1..191 | 1005 | 100 | Plus |