Clone Sequence Records
BS15019.complete Sequence
1913 bp assembled on 2009-12-07
GenBank Submission: KX802191
> BS15019.complete
GAAGTTATCAGTCGACATGGACGGCATAAACAAGTACAACGAGTTTGTGG
CGCTGCACAAGCCACAGCTGGAGTCCTCCGGTATTCCGCTGATATTTTGG
CCGGCTCTGTTCCGAAAACTGACCACGGAAACCTTCGATGCCGGCGAGGC
ACTCCAGTTGATGCTGATCGACTACGATGAGGATGAACAGCAGAATCCGG
CCGAGGACGATGACAGTCCCAACCCTGTGTTCGCACTGGGCGTAGCCCGG
GAGCAGGGCATAAAGGCCAGTGATCCTCAGGCCATCTATTTGGTCGATCA
CGCCTGGACGTTCCGGCTAAACGGTGCTCGGCAGCAGCTGGAGGAGTATC
CGCAACTGGCGGAGCGACTTTCTGCCATCACTGGCGTTGACCTTGAGCTG
AAGGATCGGGTCGACAAGATCCTGCGCCGTCTGTGGAAGTACTGCCACGC
CTACTCCATCGGCAGCGAAGGCTTGTCGGACGAGGAGCGCCAGCCCATCT
GGTATGTGATGGACGAAGTCGGCTCGGCTGTGAACCACTCGGACGATCCC
AACTTTCGACTTGTTCCGCTGCTCTACCTAAACACCCAAACCACATACAG
TGTGCTCTTTCCGATTCGGGACTGCGATGTCGGAGAAGCGGTGACCCGCG
ATATGGTGGAGCACGTGGCAAAGGATGCGCCCCAGCGGCCTGCGCTGCTT
TTACCCTGGCGCGATGCCGACCTCACGGGCGAAAGCTTCTTGCAGGTTGA
ACCCCGGGCAGATTACTTTACCAGCGGTCACATCCCTGAGACCTATCCCA
AAGGCGATACTGTTCCACTGCCAGCCAGGTCACGTTGCGATCCGCTGAAG
GTGTATGCAGAGTACGAGGTGGTGCGCCGTCATCTAACTTCGTCCGAGTT
CATCCTAGTTAACAACGCAGACGAGGCGGATGTCCTTTGGCTCACACACC
ACTTCAAGAATTTCGAGGATTTTGCAGATAGGTCGCCCGGCAAGTTCATC
AATCAGTTTCCGTTCGAGTACGTGATCACCATCAAGGATCTCCTTAGCAT
TGTGGGCCGCCGGGCGGCCAAGGAGCACCATGATAGCCTTACGCTTGAAA
CGTTTCCGGCATGGCTCCCCACCACCTATAATCTGTCCACCGAAGTAAAG
GAGTTCGCGGCTTACTACCAAACGAGAGCAGCCAAGGGCCTCGACAACCA
CTGGATTATCAAGCCCTGGAACTTGGCTCGCGGATTGGACACACATATCA
CGGACAACATCAAGCAGATCGTACGTCTACCGGCCACTGGACCGAAGATA
GCGCAGAAGTACATCGAGCGACCAGTTCTCTTTAGTCGGCAGGAGGTGGA
AGGCAGCGTTAAGTTCGATATTCGCTATGTAATCCTGTTGAAAAGCGTCA
AACCCCTGAAGGCATATATACACCGGAAGTTCTTCCTGCGTTTCGCAAAC
CATCCCTTCACGCTGGATCACTTCGATGACTACGAGAAACACTACACGGT
GATGAACTACCAGACGGAGGCGCAGCTGCATCACGTCAAGTGCGACGACT
TCCTGACGCTCTGGCAGGAACAGTATCCGGATAACGATTGGTCGGCTCTG
GAGCAGCAGATCTGTAGCATGCTGCTCGAGGTGCTTCAGTGCGCCAGTCA
AGCAGATCCACCCTGCGGCCTGGCTCCTTGTGCCCAATCACGAGCTCTTT
ACGCAGCCGACATCATGCTGCGGTGGAAGGACGATAAGGAGAAGTTGATG
GAGCCCCAGTTGCTGGAAATCAACTGGACTCCGGACTGCAAACGCGCATG
CGACTACTATCCCGACTTCTTCAACGACATCTTCCGTCTGCTCTTCCTAG
ACGAAGAAAACGACGATAGCTTCCGGGTACTGACGCCAGACAATTGAAAG
CTTTCTAGACCAT
BS15019.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:51:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1550-RA | 1881 | CG1550-PA | 1..1881 | 17..1897 | 9405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1550-RA | 1961 | CG1550-RA | 43..1923 | 17..1897 | 9405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7810106..7811986 | 1897..17 | 9405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:51:47 has no hits.
BS15019.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:21 Download gff for
BS15019.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1550-RA | 50..1929 | 17..1896 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:59:50 Download gff for
BS15019.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1550-RA | 43..1922 | 17..1896 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:12:59 Download gff for
BS15019.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1550-RA | 50..1929 | 17..1896 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:36 Download gff for
BS15019.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1550-RA | 43..1922 | 17..1896 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:36 Download gff for
BS15019.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7810107..7811986 | 17..1896 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:59:50 Download gff for
BS15019.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3697612..3699491 | 17..1896 | 100 | | Minus |
BS15019.3prime Sequence
853 bp (780 high quality bases) assembled on 2006-10-23
> BS15019.3prime
ATGGTCTAGAAAGCTTTCAATTGTCTGGCGTCAGTACCCGGAAGCTATCG
TCGTTTTCTTCGTCTAGGAAGAGCAGACGGAAGATGTCGTTGAAGAAGTC
GGGATAGTAGTCGCATGCGCGTTTGCAGTCCGGAGTCCAGTTGATTTCCA
GCAACTGGGGCTCCATCAACTTCTCCTTATCGTCCTTCCACCGCAGCATG
ATGTCGGCTGCGTAAAGAGCTCGTGATTGGGCACAAGGAGCCAGGCCGCA
GGGTGGATCTGCTTGACTGGCGCACTGAAGCACCTCGAGCAGCATGCTAC
AGATCTGCTGCTCCAGAGCCGACCAATCGTTATCCGGATACTGTTCCTGC
CAGAGCGTCAGGAAGTCGTCGCACTTGACGTGATGCAGCTGCGCCTCCGT
CTGGTAGTTCATCACCGTGTAGTGTTTCTCGTAGTCATCGAAGTGATCCA
GCGTGAAGGGATGGTTTGCGAAACGCAGGAAGAACTTCCGGTGTATATAT
GCCTTCAGGGGTTTGACGCTTTTCAACAGGATTACATAGCGAATATCGAA
CTTAACGCTGCCTTCCACCTCCTGCCGACTAAAGAGAACTGGTCGCTCGA
TGTACTTCTGCGCTATCTTCGGTCCAGTGGCCGGTAGACGTACGATCTGC
TTGATGTTGTCCGTGATATGTGTGTCCAATCCGCGAGCCAAGTTCCAGGG
CTTGATAATCCAGTGGTTGTCGAGGCCCTTGGCTGCTCTCGTTTGGTAGT
AAGCCGCGAACTCCTTTACTTCGGTGGACAGATTATAGGTGGGGGGGAGC
CATGCCGGAAACGTTTCAAGCGTAAGGCTATCATGGTGCTCCTTTGGCCG
CCC
BS15019.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:12:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1550-PA | 1881 | CG1550-RA | 1054..1881 | 844..17 | 4115 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:29:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1550-RA | 1961 | CG1550-RA | 1088..1923 | 853..17 | 4145 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:29:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7810106..7810933 | 17..844 | 4125 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:29:19 has no hits.
BS15019.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:14:46 Download gff for
BS15019.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1550-PA | 1046..1881 | 17..853 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:47:30 Download gff for
BS15019.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1550-PA | 1046..1881 | 17..853 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:29:12 Download gff for
BS15019.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1550-RA | 1088..1927 | 11..853 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:21:18 Download gff for
BS15019.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1550-RA | 1088..1927 | 11..853 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:21:18 Download gff for
BS15019.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7810102..7810941 | 11..853 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:29:12 Download gff for
BS15019.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3697607..3698446 | 11..853 | 99 | | Plus |
BS15019.5prime Sequence
868 bp (758 high quality bases) assembled on 2006-10-23
> BS15019.5prime
GAAGTTATCAGTCGACATGGACGGCATAAACAAGTACAACGAGTTTGTGG
CGCTGCACAAGCCACAGCTGGAGTCCTCCGGTATTCCGCTGATATTTTGG
CCGGCTCTGTTCCGAAAACTGACCACGGAAACCTTCGATGCCGGCGAGGC
ACTCCAGTTGATGCTGATCGACTACGATGAGGATGAACAGCAGAATCCGG
CCGAGGACGATGACAGTCCCAACCCTGTGTTCGCACTGGGCGTAGCCCGG
GAGCAGGGCATAAAGGCCAGTGATCCTCAGGCCATCTATTTGGTCGATCA
CGCCTGGACGTTCCGGCTAAACGGTGCTCGGCAGCAGCTGGAGGAGTATC
CGCAACTGGCGGAGCGACTTTCTGCCATCACTGGCGTTGACCTTGAGCTG
AAGGATCGGGTCGACAAGATCCTGCGCCGTCTGTGGAAGTACTGCCACGC
CTACTCCATCGGCAGCGAAGGCTTGTCGGACGAGGAGCGCCAGCCCATCT
GGTATGTGATGGACGAAGTCGGCTCGGCTGTGAACCACTCGGACGATCCC
AACTTTCGACTTGTTCCGCTGCTCTACCTAAACACCCAAACCACATACAG
TGTGCTCTTTCCGATTCGGGACTGCGATGTCGGAGAAGCGGTGACCCGCG
ATATGGTGGAGCACGTGGCAAAGGATGCGCCCCAGCGGCCTGCGCTGCTT
TTACCCTGGCGCGATGCCGACCTCACGGGCGAAAGCTTCTTGCAGGTTGA
ACCCCGGGCAGATTACTTTACCAGCGGTCACATCCCTGAGACCTATCCCA
AAGGCGATACTGGTCCACTGCCAGCCAGGTCACGTTGCGATCCGCTGAAN
GTGTATGCAAAGTACGAG
BS15019.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:12:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1550-PA | 1881 | CG1550-RA | 1..852 | 17..868 | 4191 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:36:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1550-RA | 1961 | CG1550-RA | 43..894 | 17..868 | 4219 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:36:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7811135..7811986 | 868..17 | 4219 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:36:45 has no hits.
BS15019.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:14:47 Download gff for
BS15019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1550-PA | 1..852 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:47:31 Download gff for
BS15019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1550-PA | 1..852 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:37:42 Download gff for
BS15019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1550-RA | 36..894 | 8..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:40:26 Download gff for
BS15019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1550-RA | 36..894 | 8..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:40:26 Download gff for
BS15019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7811135..7811993 | 8..868 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:37:42 Download gff for
BS15019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3698640..3699498 | 8..868 | 99 | | Minus |
BS15019.pep Sequence
Translation from 16 to 1896
> BS15019.pep
MDGINKYNEFVALHKPQLESSGIPLIFWPALFRKLTTETFDAGEALQLML
IDYDEDEQQNPAEDDDSPNPVFALGVAREQGIKASDPQAIYLVDHAWTFR
LNGARQQLEEYPQLAERLSAITGVDLELKDRVDKILRRLWKYCHAYSIGS
EGLSDEERQPIWYVMDEVGSAVNHSDDPNFRLVPLLYLNTQTTYSVLFPI
RDCDVGEAVTRDMVEHVAKDAPQRPALLLPWRDADLTGESFLQVEPRADY
FTSGHIPETYPKGDTVPLPARSRCDPLKVYAEYEVVRRHLTSSEFILVNN
ADEADVLWLTHHFKNFEDFADRSPGKFINQFPFEYVITIKDLLSIVGRRA
AKEHHDSLTLETFPAWLPTTYNLSTEVKEFAAYYQTRAAKGLDNHWIIKP
WNLARGLDTHITDNIKQIVRLPATGPKIAQKYIERPVLFSRQEVEGSVKF
DIRYVILLKSVKPLKAYIHRKFFLRFANHPFTLDHFDDYEKHYTVMNYQT
EAQLHHVKCDDFLTLWQEQYPDNDWSALEQQICSMLLEVLQCASQADPPC
GLAPCAQSRALYAADIMLRWKDDKEKLMEPQLLEINWTPDCKRACDYYPD
FFNDIFRLLFLDEENDDSFRVLTPDN*
BS15019.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:54:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1550-PA | 626 | CG1550-PA | 1..626 | 1..626 | 3358 | 100 | Plus |
| CG3964-PA | 982 | CG3964-PA | 467..698 | 284..531 | 162 | 25.5 | Plus |
| CG3964-PC | 989 | CG3964-PC | 467..698 | 284..531 | 162 | 25.5 | Plus |
| CG3964-PB | 989 | CG3964-PB | 467..698 | 284..531 | 162 | 25.5 | Plus |
