Clone BS15020 Report

Search the DGRC for BS15020

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:150
Well:20
Vector:pDNR-Dual
Associated Gene/Transcriptshep-RA
Protein status:BS15020.pep: full length peptide match
Sequenced Size:1769

Clone Sequence Records

BS15020.3prime Sequence

791 bp (757 high quality bases) assembled on 2006-10-23

> BS15020.3prime
ATGGTCTAGAAAGCTTCTATTTGGGAGCGGCTTGATGTGGATACTGTGTG
TATGCCTCGTCGGGTGATGCAGCTGTGCTAGCCTGTTCGGAATCTGTCAT
TGGCATTGTTGGTATAATAGTTGGTGGTGGTGCATAATATGGATAAGTTG
GACTAATATAAGAGTTGCCAATCTGCAGGGTGGCCAACTGAGGCATCATT
GTTCCATATGGCACGCCCGTATCACCGCTAACCATCATCGAGATGCCACG
GGGCTGCACCTGGTTAACCGCCTCCGGTTTGTATGAGGTTACTCCCAGCG
GAGGGGCAGCTGCCATCTGCATGTACTGTGGAGAATACGAAGTCTGATCA
TCTACCTGAGTCATCATGTAACCCGGAATCCATTGGGAGCCGGCCACTGG
ATAGCCACCCACCTGGGGGGCGCTGAAGCGGGAGTAGGGCACTCCGATGG
GTGTGCCCACGTTCACGCTGACTCCATTCTGCTGCATTGTGGGGTCGTAG
GCCACGGGAATCCCCTCCGCGGAGACGTCACGCCACGCACGCGCATTCGG
ATCGGGCGTCTTGAAGAGATTCTTCTTTTTCGGTCCGCCATCGGCAAACT
TAACCAGCAGGGGATCTTTGGCACCCGGTATTGTGTTACCATTGAACATC
TGAATGATTTGCTCGCACTTCTCGCGACTCTCCATGCGGGCAAAGCCAAC
GCCCTTGGAGTTCATCTGCTGATCACGCAATATTCTGGTCGAAACAACTT
GTCCGTATTTCGATAGCATTGCCTCCAGATCAGTTTCTTTG

BS15020.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:12:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG32423-PA 1737 CG32423-RA 963..1737 791..17 3875 100 Minus
CG32423-PC 1107 CG32423-RC 333..1107 791..17 3875 100 Minus
CG32423-PD 1500 CG32423-RD 705..1335 791..161 3155 100 Minus
CG32423-PB 1500 CG32423-RB 705..1335 791..161 3155 100 Minus
CG32423-PD 1500 CG32423-RD 1357..1500 160..17 720 100 Minus
CG32423-PB 1500 CG32423-RB 1357..1500 160..17 720 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:26:38
Subject Length Description Subject Range Query Range Score Percent Strand
shep-RF 5850 CG32423-RF 1371..2145 791..17 3875 100 Minus
shep-RE 2776 CG32423-RE 1075..1849 791..17 3875 100 Minus
shep-RI 4661 CG32423-RI 1069..1843 791..17 3875 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:26:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5163345..5163704 344..703 1800 100 Plus
3L 28110227 3L 5162967..5163151 161..345 925 100 Plus
3L 28110227 3L 5162467..5162610 17..160 720 100 Plus
3L 28110227 3L 5163833..5163922 702..791 450 100 Plus
Blast to na_te.dros performed on 2015-02-11 03:26:35 has no hits.

BS15020.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:14:48 Download gff for BS15020.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32423-PC 333..1107 17..791 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:47:33 Download gff for BS15020.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32423-PC 333..1107 17..791 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:05:04 Download gff for BS15020.3prime
Subject Subject Range Query Range Percent Splice Strand
shep-RI 1069..1848 11..791 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:51:48 Download gff for BS15020.3prime
Subject Subject Range Query Range Percent Splice Strand
shep-RI 1069..1848 11..791 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:51:48 Download gff for BS15020.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 5162462..5162610 11..160 98 <- Plus
3L 5162967..5163149 161..343 100 <- Plus
3L 5163345..5163703 344..702 100 <- Plus
3L 5163834..5163922 703..791 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:05:04 Download gff for BS15020.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5155562..5155710 11..160 98 <- Plus
arm_3L 5156067..5156249 161..343 100 <- Plus
arm_3L 5156445..5156803 344..702 100 <- Plus
arm_3L 5156934..5157022 703..791 100   Plus

BS15020.5prime Sequence

828 bp (733 high quality bases) assembled on 2006-10-23

> BS15020.5prime
GAAGTTATCCTTCGACATGCACCCACGATACAGCCCAGCCCCGCCCCCTC
AGCAACAGCAACAGATGGGCGGACCGCCACACCAGCAGCAGGGCGGCGGG
GGAGGTGGAGGCGTTAGCATGAGGGGGCCATCGAATGCCCAGCAATTGCC
GCCGCAGATTCCGAGATCCCAGAACTATTCAAACGGGAGCTCGTCTAGCG
CCGCCGCCGCACCTCTAACATCGCGCAGCGCCTTCCCCGGCGCCCCGCTC
ACCGCCTCAGCCGTCGCACTCAAGGGCGCTCTACCCCAGCGGCCACCGGC
CATGACAAGTCCCGCAGCCGCTGCCGCTGGCGCCGCCCTGGCCGCCGGTG
CACCTTATCGCGGTGCCGCCAGCTGGACCCCGCAGGGTTATGCCCCGGCC
GCTGCCGCAGCCGCCGCTGCTGTTGCCCAGCAGGCAGCCTACCGCTATAC
GGCGCCGCTGCCCCAGCCGGCGTATGCCGCCTATACGCCGCACACGGCCA
CGACACCGGCCACAACCACGTACGGTCAGCGAGTGCCGACGGCAGCCTCA
CCGAGCAACACCAACTCGAGCAGCTCCTCGAACACTGGCTCCCAGAGCGG
CACCCTGAGCACCAGCCTGAGCAACACGACGAACACCAACACGAACATGG
GTCCCAACGGCACGGTACAGAATCAGAACCAACAGGGCGGCGAGCAGTTG
TCCAAGACAAATCTCTACATTCGCGGTCTGCAGCAGGGCACAACCGACAA
GGATCTAGTTAATATGTGTGCACAATACNGAACAATTATATCAACCAAGG
CTATTTTAGATAAAACAACAACAAATGT

BS15020.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:12:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG32423-PA 1737 CG32423-RA 1..805 17..821 4006 99.8 Plus
CG32423-PD 1500 CG32423-RD 1..520 302..821 2581 99.8 Plus
CG32423-PB 1500 CG32423-RB 1..520 302..821 2581 99.8 Plus
CG32423-PC 1107 CG32423-RC 1..175 647..821 856 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:16:44
Subject Length Description Subject Range Query Range Score Percent Strand
shep-RA 3036 CG32423-RA 373..1185 17..828 4029 99.8 Plus
shep-RB 7989 CG32423-RB 541..1189 181..828 3194 99.5 Plus
shep-RD 4580 CG32423-RD 1996..2640 185..828 3189 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:16:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5218950..5219285 520..185 1680 100 Minus
3L 28110227 3L 5170187..5170441 774..520 1275 100 Minus
3L 28110227 3L 5276154..5276322 185..17 845 100 Minus
3L 28110227 3L 5168256..5168302 821..775 224 97.9 Minus
Blast to na_te.dros performed 2015-02-04 21:16:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2387..2533 494..647 141 60.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2367..2417 41..91 120 70.6 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 149..198 44..93 115 70 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9179..9228 44..93 115 70 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 164..211 425..380 109 72.9 Minus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9194..9241 425..380 109 72.9 Minus

BS15020.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:14:49 Download gff for BS15020.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32423-PA 1..813 17..828 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:47:34 Download gff for BS15020.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32423-PA 1..813 17..828 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:41:15 Download gff for BS15020.5prime
Subject Subject Range Query Range Percent Splice Strand
shep-RA 373..1185 17..828 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:44:58 Download gff for BS15020.5prime
Subject Subject Range Query Range Percent Splice Strand
shep-RA 373..1185 17..828 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:44:58 Download gff for BS15020.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 5168248..5168302 775..828 96 <- Minus
3L 5170187..5170440 521..774 100 <- Minus
3L 5218950..5219285 185..520 100 <- Minus
3L 5276155..5276327 13..184 97 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:41:15 Download gff for BS15020.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5161348..5161402 775..828 96 <- Minus
arm_3L 5163287..5163540 521..774 100 <- Minus
arm_3L 5212050..5212385 185..520 100 <- Minus
arm_3L 5269255..5269427 13..184 97 <- Minus

BS15020.complete Sequence

1769 bp assembled on 2010-01-09

GenBank Submission: KX802093

> BS15020.complete
GAAGTTATCAGTCGACATGCACCCACGATACAGCCCAGCCCCGCCCCCTC
AGCAACAGCAACAGATGGGCGGACCGCCACACCAGCAGCAGGGCGGCGGG
GGAGGTGGAGGCGTTAGCATGAGGGGGCCATCGAATGCCCAGCAATTGCC
GCCGCAGATTCCGAGATCCCAGAACTATTCAAACGGGAGCTCGTCTAGCG
CCGCCGCCGCACCTCTAACATCGCGCAGCGCCTTCCCCGGCGCCCCGCTC
ACCGCCTCAGCCGTCGCACTCAAGGGCGCTCTACCCCAGCGGCCACCGGC
CATGACAAGTCCCGCAGCCGCTGCCGCTGGCGCCGCCCTGGCCGCCGGTG
CACCTTATCGCGGTGCCGCCAGCTGGACCCCGCAGGGTTATGCCCCGGCC
GCTGCCGCAGCCGCCGCTGCTGTTGCCCAGCAGGCAGCCTACCGCTATAC
GGCGCCGCTGCCCCAGCCGGCGTATGCCGCCTATACGCCGCACACGGCCA
CGACACCGGCCACAACCACGTACGGTCAGCGAGTGCCGACGGCAGCCTCA
CCGAGCAACACCAACTCGAGCAGCTCCTCGAACACTGGCTCCCAGAGCGG
CACCCTGAGCACCAGCCTGAGCAACACGACGAACACCAACACGAACATGG
GTCCCAACGGCACGGTACAGAATCAGAACCAACAGGGCGGCGAGCAGTTG
TCCAAGACAAATCTCTACATTCGCGGTCTGCAGCAGGGCACAACCGACAA
GGATCTAGTTAATATGTGTGCACAATACGGAACAATTATATCAACCAAGG
CTATTTTAGATAAAACAACAAACAAATGTAAAGGTTACGGCTTCGTCGAC
TTCGAGCAGCCAGCCTTCGCCGAGTGCGCCGTAAAAGGATTGCAGGGGAA
GGGCGTGCAAGCTCAGATGGCCAAACAACAGGAACAGGATCCCACAAATT
TGTATATTGCAAATTTGCCGCCCCACTTCAAAGAAACTGATCTGGAGGCA
ATGCTATCGAAATACGGACAAGTTGTTTCGACCAGAATATTGCGTGATCA
GCAGATGAACTCCAAGGGCGTTGGCTTTGCCCGCATGGAGAGTCGCGAGA
AGTGCGAGCAAATCATTCAGATGTTCAATGGTAACACAATACCGGGTGCC
AAAGATCCCCTGCTGGTTAAGTTTGCCGATGGCGGACCGAAAAAGAAGAA
TCTCTTCAAGACGCCCGATCCGAATGCGCGTGCGTGGCGTGACGTCTCCG
CGGAGGGGATTCCCGTGGCCTACGACCCCACAATGCAGCAGAATGGAGTC
AGCGTGAACGTGGGCACACCCATCGGAGTGCCCTACTCCCGCTTCAGCGC
CCCCCAGGTGGGTGGCTATCCAGTGGCCGGCTCCCAATGGATTCCGGGTT
ACATGATGACTCAGGTAGATGATCAGACTTCGTATTCTCCACAGTACATG
CAGATGGCAGCTGCCCCTCCGCTGGGAGTAACCTCATACAAACCGGAGGC
GGTTAACCAGGTGCAGCCCCGTGGCATCTCGATGATGGTTAGCGGTGATA
CGGGCGTGCCATATGGAACAATGATGCCTCAGTTGGCCACCCTGCAGATT
GGCAACTCTTATATTAGTCCAACTTATCCATATTATGCACCACCACCAAC
TATTATACCAACAATGCCAATGACAGATTCCGAACAGGCTAGCACAGCTG
CATCACCCGACGAGGCATACACACAGTATCCACATCAAGCCGCTCCCAAA
TAGAAGCTTTCTAGACCAT

BS15020.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:13:50
Subject Length Description Subject Range Query Range Score Percent Strand
shep-RA 1737 CG32423-PA 1..1737 17..1753 8685 100 Plus
shep-RF 1773 CG32423-PF 540..1773 520..1753 6170 100 Plus
shep-RE 1140 CG32423-PE 306..1140 919..1753 4145 99.8 Plus
shep-RF 1773 CG32423-PF 1..504 17..520 2520 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:13:52
Subject Length Description Subject Range Query Range Score Percent Strand
shep-RA 3036 CG32423-RA 373..2109 17..1753 8685 100 Plus
shep-RF 5850 CG32423-RF 912..2145 520..1753 6170 100 Plus
shep-RE 2776 CG32423-RE 1015..1849 919..1753 4145 99.8 Plus
shep-RF 5850 CG32423-RF 373..876 17..520 2520 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:13:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5163345..5163704 1426..1067 1800 100 Minus
3L 28110227 3L 5218950..5219285 520..185 1680 100 Minus
3L 28110227 3L 5170187..5170441 774..520 1275 100 Minus
3L 28110227 3L 5162967..5163151 1609..1425 925 100 Minus
3L 28110227 3L 5276154..5276322 185..17 845 100 Minus
3L 28110227 3L 5162467..5162610 1753..1610 720 100 Minus
3L 28110227 3L 5163833..5163975 1068..926 715 100 Minus
3L 28110227 3L 5166968..5167061 925..832 470 100 Minus
3L 28110227 3L 5168242..5168302 835..775 305 100 Minus
Blast to na_te.dros performed 2014-11-27 01:13:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2387..2533 494..647 141 60.5 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 113..198 5..93 121 64 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9143..9228 5..93 121 64 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2367..2417 41..91 120 70.6 Plus

BS15020.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:05:49 Download gff for BS15020.complete
Subject Subject Range Query Range Percent Splice Strand
shep-RA 373..2103 17..1747 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:48:34 Download gff for BS15020.complete
Subject Subject Range Query Range Percent Splice Strand
shep-RA 373..2103 17..1747 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:26:29 Download gff for BS15020.complete
Subject Subject Range Query Range Percent Splice Strand
shep-RA 373..2103 17..1747 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:21:18 Download gff for BS15020.complete
Subject Subject Range Query Range Percent Splice Strand
shep-RA 373..2103 17..1747 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:21:18 Download gff for BS15020.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5218950..5219285 185..520 100 <- Minus
3L 5276155..5276322 17..184 100   Minus
3L 5162473..5162610 1610..1747 100 <- Minus
3L 5162967..5163149 1427..1609 100 <- Minus
3L 5163345..5163703 1068..1426 100 <- Minus
3L 5163834..5163975 926..1067 100 <- Minus
3L 5166968..5167059 834..925 100 <- Minus
3L 5168244..5168302 775..833 100 <- Minus
3L 5170187..5170440 521..774 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:48:34 Download gff for BS15020.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5156934..5157075 926..1067 100 <- Minus
arm_3L 5160068..5160159 834..925 100 <- Minus
arm_3L 5161344..5161402 775..833 100 <- Minus
arm_3L 5163287..5163540 521..774 100 <- Minus
arm_3L 5212050..5212385 185..520 100 <- Minus
arm_3L 5155573..5155710 1610..1747 100 <- Minus
arm_3L 5156067..5156249 1427..1609 100 <- Minus
arm_3L 5156445..5156803 1068..1426 100 <- Minus
arm_3L 5269255..5269422 17..184 100   Minus

BS15020.pep Sequence

Translation from 16 to 1752

> BS15020.pep
MHPRYSPAPPPQQQQQMGGPPHQQQGGGGGGGVSMRGPSNAQQLPPQIPR
SQNYSNGSSSSAAAAPLTSRSAFPGAPLTASAVALKGALPQRPPAMTSPA
AAAAGAALAAGAPYRGAASWTPQGYAPAAAAAAAAVAQQAAYRYTAPLPQ
PAYAAYTPHTATTPATTTYGQRVPTAASPSNTNSSSSSNTGSQSGTLSTS
LSNTTNTNTNMGPNGTVQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLVNM
CAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVKGLQGKGVQAQ
MAKQQEQDPTNLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQQMNSK
GVGFARMESREKCEQIIQMFNGNTIPGAKDPLLVKFADGGPKKKNLFKTP
DPNARAWRDVSAEGIPVAYDPTMQQNGVSVNVGTPIGVPYSRFSAPQVGG
YPVAGSQWIPGYMMTQVDDQTSYSPQYMQMAAAPPLGVTSYKPEAVNQVQ
PRGISMMVSGDTGVPYGTMMPQLATLQIGNSYISPTYPYYAPPPTIIPTM
PMTDSEQASTAASPDEAYTQYPHQAAPK*

BS15020.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:46:02
Subject Length Description Subject Range Query Range Score Percent Strand
shep-PA 578 CG32423-PA 1..578 1..578 3033 100 Plus
shep-PF 590 CG32423-PF 1..590 1..578 3010 98 Plus
shep-PB 499 CG32423-PB 1..499 96..578 2466 96 Plus
shep-PD 499 CG32423-PD 1..499 96..578 2466 96 Plus
shep-PE 379 CG32423-PE 1..379 211..578 1926 97.1 Plus