Clone Sequence Records
BS15021.complete Sequence
932 bp assembled on 2010-02-09
GenBank Submission: KX805531
> BS15021.complete
GAAGTTATCAGTCGACATGGCTCCTACCGCCAAGACCAACAAGGGTGATA
CCAAGACCGCTGCCGCTAAGCCAGCGGAGAAGAAGGCCGCTCCCGCAGCC
GCCGCCGCCAAGGGCAAGGTGGAGAAGCCGAAGGCTGAGGCCGCCAAGCC
CGCCGCCGCCGCGGCCAAGAACGTGAAGAAGGCGTCCGAGGCGGCCAAGG
ATGTAAAGGCAGCCGCCGCTGCTGCCAAGCCCGCGGCAGCCAAGCCCGCA
GCTGCCAAGCCCGCCGCCGCTTCCAAGGATGCCGGAAAGAAGGCTCCCGC
TGCCGCTGCTCCCAAGAAGGACGCCAAGGCTGCTGCTGCTCCGGCTCCCG
CCAAGGCTGCTCCGGCCAAGAAGGCTGCCTCCACGCCTGCTGCCGCTCCC
CCAGCAAAGAAGGCTGCTCCCGCCAAGGCCGCAGCCCCGGCTGCTGCTGC
TCCCGCTCCGGCTGCAGCTGCTCCTGCTGTCGCCAAGCCCGCGCCTAAGC
CGAAGGCAAAGGCTGCCCCAGCTCCCAGCAAGGTGGTCAAGAAGAACGTG
CTGCGTGGCAAGGGACAGAAGAAGAAGAAGGTCTCGCTGCGCTTCACTAT
CGACTGCACCAACATTGCTGAGGATAGCATCATGGATGTGGCCGACTTCG
AGAAGTACATCAAGGCCCGCCTTAAGGTCAACGGCAAGGTGAACAACCTG
GGCAACAACGTCACCTTCGAGCGCTCCAAGCTGAAGCTCATTGTCAGCTC
CGACGTTCACTTTTCCAAGGCATACCTCAAGTACTTGACCAAGAAGTACC
TGAAGAAGAACAGTCTGCGCGACTGGATCCGTGTGGTGGCCAACGAAAAG
GACTCGTACGAGCTGCGCTACTTCAGAATCAGCTCCAACGACGATGAGGA
CGACGATGCCGAGTAAAAGCTTTCTAGACCAT
BS15021.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:30:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL22-RA | 900 | CG7434-PA | 1..900 | 17..916 | 4500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:30:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL22-RA | 1100 | CG7434-RA | 36..936 | 17..917 | 4505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:30:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 764301..764922 | 650..29 | 3110 | 100 | Minus |
| X | 23542271 | X | 762724..762991 | 917..650 | 1340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:30:30 has no hits.
BS15021.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:11:49 Download gff for
BS15021.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL22-RA | 45..942 | 17..914 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:41 Download gff for
BS15021.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL22-RA | 36..933 | 17..914 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:07:20 Download gff for
BS15021.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL22-RA | 45..942 | 17..914 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:30:33 Download gff for
BS15021.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL22-RA | 36..933 | 17..914 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:30:33 Download gff for
BS15021.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 762727..762991 | 650..914 | 100 | <- | Minus |
| X | 764302..764922 | 29..649 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:41 Download gff for
BS15021.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 656760..657024 | 650..914 | 100 | <- | Minus |
| arm_X | 658335..658955 | 29..649 | 100 | <- | Minus |
BS15021.3prime Sequence
929 bp (771 high quality bases) assembled on 2006-10-23
> BS15021.3prime
ATGGTCTAGAAAGCTTTTACTCGGCATCGTCGTCCTCATCGTCGTTGGAG
CTGATTCTGAAGTAGCGCAGCTCGTACGAGTCCTTTTCGTTGGCCACCAC
ACGGATCCAGTCGCGCAGACTGTTCTTCTTCAGGTACTTCTTGGTCAAGT
ACTTGAGGTATGCCTTGGAAAAGTGAACGTCGGAGCTGACAATGAGCTTC
AGCTTGGAGCGCTCGAAGGTGACGTTGTTGCCCAGGTTGTTCACCTTGCC
GTTGACCTTAAGGCGGGCCTTGATGTACTTCTCGAAGTCGGCCACATCCA
TGATGCTATCCTCAGCAATGTTGGTGCAGTCGATAGTGAAGCGCAGCGAG
ACCTTCTTCTTCTTCTGTCCCTTGCCACGCAGCACGTTCTTCTTGACCAC
CTTGCTGGGAGCTGGGGCAGCCTTTGCCTTCGGCTTAGGCGCGGGCTTGG
CGACAGCAGGAGCAGCTGCAGCCGGAGCGGGAGCAGCAGCAGCCGGGGCT
GCGGCCTTGGCGGGAGCAGCCTTCTTTGCTGGGGGAGCGGCAGCAGGCGT
GGAGGCAGCCTTCTTGGCCGGAGCAGCCTTGGCGGGAGCCGGAGCAGCAG
CAGCCTTGGCGTCCTTCTTGGGAGCAGCGGCAGCGGGAGCCTTCTTTCCG
GCATCCTTGGAAGCGGCGGCGGGCTTGGCAGCTGCGGGCTTGGCTGCCGC
GGGCTTGGCAGCAGCGGCGGCTGCCTTTACATCCTTGGCCGCCTCGGACG
CCTTCTTCACGTTCTTGGCCGCGGGGGCGGCGGGCTTGGCGGCCTCAGCC
TTCGGCTTCTCCACCTTGCCCTTGGCGGCGGCGGCTGCGGGAGCGGCCTT
CTTCTCCGCTGGCTTAGCGGCAGCGGTCTTGGTATCCCCCTTGGTGGTCT
GGGCGGGAGGAGCCATGTCGACTGAAAAC
BS15021.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:12:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7434-PA | 900 | RpL22-RA | 1..900 | 916..17 | 4375 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:02:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL22-RA | 1100 | CG7434-RA | 36..936 | 916..16 | 4430 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:01:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 764301..764922 | 283..904 | 3050 | 99.4 | Plus |
| X | 23542271 | X | 762724..762991 | 16..283 | 1340 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:02:02 has no hits.
BS15021.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 11:14:50 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:47:36 Download gff for
BS15021.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7434-PA | 1..900 | 17..916 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:35:00 Download gff for
BS15021.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL22-RA | 36..936 | 16..916 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:34:30 Download gff for
BS15021.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL22-RA | 36..936 | 16..916 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:34:30 Download gff for
BS15021.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 762724..762991 | 16..283 | 100 | <- | Plus |
| X | 764302..764922 | 284..904 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:35:00 Download gff for
BS15021.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 656757..657024 | 16..283 | 100 | <- | Plus |
| arm_X | 658335..658955 | 284..904 | 99 | | Plus |
BS15021.5prime Sequence
876 bp (755 high quality bases) assembled on 2006-10-23
> BS15021.5prime
GAAGTTATCCTTCGACATGGCTCCTACCGCCAAGACCAACAAGGGTGATA
CCAAGACCGCTGCCGCTAAGCCAGCGGAGAAGAACGCCGCTCCCGCAGCC
GCCGCCGCCAAGGGCAAGGTGGAGAAGCCGAAGGCTGAGGCCGCCAAGCC
CGCCGCCGCCGCGGCCAAGAACGTGAAGAAGGCGTCCGAGGCGGCCAAGG
ATGTAAAGGCAGCCGCCGCTGCTGCCAAGCCCGCGGCAGCCAAGCCCGCA
GCTGCCAAGCCCGCCGCCGCTTCCAAGGATGCCGGAAAGAAGGCTCCCGC
TGCCGCTGCTCCCAAGAAGGACGCCAAGGCTGCTGCTGCTCCGGCTCCCG
CCAAGGCTGCTCCGGCCAAGAAGGCTGCCTCCACGCCTGCTGCCGCTCCC
CCAGCAAAGAAGGCTGCTCCCGCCAAGGCCGCAGCCCCGGCTGCTGCTGC
TCCCGCTCCGGCTGCAGCTGCTCCTGCTGTCGCCAAGCCCGCGCCTAAGC
CGAAGGCAAAGGCTGCCCCAGCTCCCAGCAAGGTGGTCAAGAAGAACGTG
CTGCGTGGCAAGGGACAGAAGAAGAAGAAGGTCTCGCTGCGCTTCACTAT
CGACTGCACCAACATTGCTGAGGATAGCATCATGGATGTGGCCGACTTCG
AGAAGTACATCAAGGCCCGCCTTAAGGTCAACGGCAAGGTGAACAACCTG
GGCAACAACGTCACCTTCGAGCGCTCCAAGCTGAAGCTCATTGTCAGCTC
CGACGTTCACTTTTCCAAGGCATACCTCAAGTACTTGACCAAGAAGTACC
TGAAGAAGAACAGTCTGCGCGACTGGATCCGTGTGGTGGCCAACGAAAAG
GACTCGTACGAGCTGCGCTACTTCAG
BS15021.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:12:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7434-PA | 900 | RpL22-RA | 1..860 | 17..876 | 4275 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:06:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL22-RA | 1100 | CG7434-RA | 36..895 | 17..876 | 4285 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:06:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 764301..764922 | 650..29 | 3095 | 99.8 | Minus |
| X | 23542271 | X | 762765..762991 | 876..650 | 1135 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:06:29 has no hits.
BS15021.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 11:14:51 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:47:37 Download gff for
BS15021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7434-PA | 1..860 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:50:17 Download gff for
BS15021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL22-RA | 36..895 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:24:03 Download gff for
BS15021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL22-RA | 36..895 | 17..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:24:03 Download gff for
BS15021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 762765..762991 | 650..876 | 100 | <- | Minus |
| X | 764302..764922 | 29..649 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:50:17 Download gff for
BS15021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 656798..657024 | 650..876 | 100 | <- | Minus |
| arm_X | 658335..658955 | 29..649 | 99 | <- | Minus |
BS15021.pep Sequence
Translation from 16 to 915
> BS15021.pep
MAPTAKTNKGDTKTAAAKPAEKKAAPAAAAAKGKVEKPKAEAAKPAAAAA
KNVKKASEAAKDVKAAAAAAKPAAAKPAAAKPAAASKDAGKKAPAAAAPK
KDAKAAAAPAPAKAAPAKKAASTPAAAPPAKKAAPAKAAAPAAAAPAPAA
AAPAVAKPAPKPKAKAAPAPSKVVKKNVLRGKGQKKKKVSLRFTIDCTNI
AEDSIMDVADFEKYIKARLKVNGKVNNLGNNVTFERSKLKLIVSSDVHFS
KAYLKYLTKKYLKKNSLRDWIRVVANEKDSYELRYFRISSNDDEDDDAE*
BS15021.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:12:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL22-PA | 299 | CG7434-PA | 1..299 | 1..299 | 1475 | 100 | Plus |
| RpL22-like-PA | 312 | CG9871-PA | 5..299 | 4..297 | 480 | 42.9 | Plus |
| Nopp140-PF | 685 | CG7421-PF | 224..440 | 2..176 | 213 | 36.1 | Plus |
| Nopp140-PB | 686 | CG7421-PB | 224..440 | 2..176 | 213 | 36.1 | Plus |
| Nopp140-PA | 720 | CG7421-PA | 224..440 | 2..176 | 213 | 36.1 | Plus |
| Nopp140-PF | 685 | CG7421-PF | 311..466 | 2..175 | 208 | 39.1 | Plus |
| Nopp140-PB | 686 | CG7421-PB | 311..466 | 2..175 | 208 | 39.1 | Plus |
| Nopp140-PF | 685 | CG7421-PF | 59..259 | 3..172 | 195 | 34.1 | Plus |
| Nopp140-PB | 686 | CG7421-PB | 59..259 | 3..172 | 195 | 34.1 | Plus |
| Nopp140-PF | 685 | CG7421-PF | 255..466 | 5..180 | 186 | 33.5 | Plus |
| Nopp140-PB | 686 | CG7421-PB | 255..466 | 5..180 | 186 | 33.5 | Plus |
| Nopp140-PF | 685 | CG7421-PF | 130..312 | 2..168 | 182 | 33.2 | Plus |
| Nopp140-PB | 686 | CG7421-PB | 130..312 | 2..168 | 182 | 33.2 | Plus |
| Nopp140-PF | 685 | CG7421-PF | 332..497 | 13..171 | 180 | 39.7 | Plus |
| Nopp140-PB | 686 | CG7421-PB | 332..497 | 13..171 | 180 | 39.7 | Plus |
| Nopp140-PF | 685 | CG7421-PF | 52..220 | 12..169 | 174 | 34.3 | Plus |
| Nopp140-PB | 686 | CG7421-PB | 52..220 | 12..169 | 174 | 34.3 | Plus |
| Nopp140-PF | 685 | CG7421-PF | 158..382 | 2..190 | 172 | 29.6 | Plus |
| Nopp140-PB | 686 | CG7421-PB | 158..382 | 2..190 | 172 | 29.6 | Plus |
| Nopp140-PF | 685 | CG7421-PF | 364..523 | 13..172 | 154 | 34.3 | Plus |
| Nopp140-PB | 686 | CG7421-PB | 364..523 | 13..172 | 154 | 34.3 | Plus |
| Nopp140-PB | 686 | CG7421-PB | 375..622 | 2..247 | 154 | 26.2 | Plus |
