Clone BS15029 Report

Search the DGRC for BS15029

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:150
Well:29
Vector:pDNR-Dual
Associated Gene/TranscriptRpS3-RA
Protein status:BS15029.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15029.3prime Sequence

771 bp (764 high quality bases) assembled on 2006-10-23

> BS15029.3prime
ATGGTCTAGAAAGCTTTTACAAAACTTTCGCCTCGGACAGATCGTCCAGT
GGCTTGCTGGGCGGGGGGATCTTGTACTCGGTCTCGGGCGTCTCGTAGAT
CTTCTCCTCCTTGGGCTCCACAACGGACACATTGTCGGGCAGCGGCTTCT
TGGGGCCGATCTTGTTCTTGGGGTCGTAGGGCAACATGACCTTGACCTTG
ATACCAAGCACTCCCTGGCGGAGGAGCACATGACGGGTGGCGGTCTCGAC
ATAGTCGTTGCACGGATCTCCCGAATGGATCATCAGGCCATCGACGAATT
TCATCGACTTGGCACGCTGACCACGCAGTTTGCCGGACACGACGACCTCG
CAGCCCTTGGCTCCCGACTCCATGATGTAGCGGAGCACACCATAGCAAGC
ACGACGGACGGCCAGTCCTCCGGTGAGCTTGTACCTCAGCGACTCAGCCT
GGGCAATGGCGCACAGGCCACGAGCGGCCACCTTCTCGGCGTACAACTCA
ATGCGTCCGGTCTCGAAGTTGAAACGCTTCTGCACCATGGCGGTCAGCTC
CCGAATGCGACGGCCCTTCTCGCCCAGCACCTGCTGGGTCTTGGTGGCCA
TGATGATGATCTCAGTGCGAGAGGGGGTCACACGGACCTCCACGCCGGAG
TAGCCATCCTCGGCGAGTTCGCGAGTCAGGAACTCGTTCAATTCAGCCTT
GAAGATGCCATCGGAAACGAACTTGCGTTTCTTGGAAATCGGAAGGTTCG
CATTCATGTCGACTGATAACT

BS15029.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:12:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG6779-PA 741 RpS3-RA 1..741 757..17 3705 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:28:36
Subject Length Description Subject Range Query Range Score Percent Strand
RpS3-RB 1133 CG6779-RB 44..785 757..16 3710 100 Minus
RpS3-RA 854 CG6779-RA 44..785 757..16 3710 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:28:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23359152..23359859 723..16 3540 100 Minus
3R 32079331 3R 23358855..23358890 757..722 180 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:28:32 has no hits.

BS15029.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:14:59 Download gff for BS15029.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS3-PA 1..741 17..757 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:47:47 Download gff for BS15029.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6779-PA 1..741 17..757 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:29:04 Download gff for BS15029.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS3-RA 38..788 12..763 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:20:59 Download gff for BS15029.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS3-RA 38..788 12..763 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:20:59 Download gff for BS15029.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23358849..23358890 722..763 95 -> Minus
3R 23359154..23359862 12..721 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:29:04 Download gff for BS15029.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19184571..19184612 722..763 95 -> Minus
arm_3R 19184876..19185584 12..721 99   Minus

BS15029.5prime Sequence

771 bp (698 high quality bases) assembled on 2006-10-23

> BS15029.5prime
GAAGTTATCCGTCGACATGAATGCGAACCTTCCGATTTCCAAGAAACGCA
AGTTCGTTTCCGATGGCATCTTCAAGGCTGAATTGAACGAGTTCCTGACT
CGCGAACTCGCCGAGGATGGCTACTCCGGCGTGGAGGTCCGTGTGACCCC
CTCTCGCACTGAGATCATCATCATGGCCACCAAGACCCAGCAGGTGCTGG
GCGAGAAGGGCCGTCGCATTCGGGAGCTGACCGCCATGGTGCAGAAGCGT
TTCAACTTCGAGACCGGACGCATTGAGTTGTACGCCGAGAAGGTGGCCGC
TCGTGGCCTGTGCGCCATTGCCCAGGCTGAGTCGCTGAGGTACAAGCTCA
CCGGAGGACTGGCCGTCCGTCGTGCTTGCTATGGTGTGCTCCGCTACATC
ATGGAGTCGGGAGCCAAGGGCTGCGAGGTCGTCGTGTCCGGCAAACTGCG
TGGTCAGCGTGCCAAGTCGATGAAATTCGTCGATGGCCTGATGATCCATT
CGGGAGATCCGTGCAACGACTATGTCGAGACCGCCACCCGTCATGTGCTC
CTCCGCCAGGGAGTGCTTGGTATCAAGGTCAAGGTCATGTTGCCCTACGA
CCCCAAGAACAAGATCGGCCCCAAGAAGCCGCTGCCCGACAATGTGTCCG
TTGTGGAGCCCAAGGAGGAGAAGATCTACGAGACGCCCGAGACCGAGTAC
AAGATCCCCCCGCCCAGCAAGCCACTGGACGATCTGTCCGAGGCGAAAGT
TTTGTAAAAGCTTTCTAGACC

BS15029.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:12:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG6779-PA 741 RpS3-RA 1..741 17..757 3705 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:11:58
Subject Length Description Subject Range Query Range Score Percent Strand
RpS3-RB 1133 CG6779-RB 37..785 10..758 3715 99.7 Plus
RpS3-RA 854 CG6779-RA 37..785 10..758 3715 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:11:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23359152..23359859 51..758 3540 100 Plus
3R 32079331 3R 23358848..23358890 10..52 185 95.3 Plus
Blast to na_te.dros performed on 2015-02-11 17:11:55 has no hits.

BS15029.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:15:00 Download gff for BS15029.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS3-PA 1..741 17..757 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:47:48 Download gff for BS15029.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6779-PA 1..741 17..757 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:53:30 Download gff for BS15029.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS3-RA 37..788 10..762 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:05:27 Download gff for BS15029.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS3-RA 37..788 10..762 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:05:27 Download gff for BS15029.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23358848..23358890 10..52 95 -> Plus
3R 23359154..23359862 53..762 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:53:30 Download gff for BS15029.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19184570..19184612 10..52 95 -> Plus
arm_3R 19184876..19185584 53..762 99   Plus

BS15029.complete Sequence

773 bp assembled on 2006-11-01

GenBank Submission: FJ637857

> BS15029.complete
GAAGTTATCAGTCGACATGAATGCGAACCTTCCGATTTCCAAGAAACGCA
AGTTCGTTTCCGATGGCATCTTCAAGGCTGAATTGAACGAGTTCCTGACT
CGCGAACTCGCCGAGGATGGCTACTCCGGCGTGGAGGTCCGTGTGACCCC
CTCTCGCACTGAGATCATCATCATGGCCACCAAGACCCAGCAGGTGCTGG
GCGAGAAGGGCCGTCGCATTCGGGAGCTGACCGCCATGGTGCAGAAGCGT
TTCAACTTCGAGACCGGACGCATTGAGTTGTACGCCGAGAAGGTGGCCGC
TCGTGGCCTGTGCGCCATTGCCCAGGCTGAGTCGCTGAGGTACAAGCTCA
CCGGAGGACTGGCCGTCCGTCGTGCTTGCTATGGTGTGCTCCGCTACATC
ATGGAGTCGGGAGCCAAGGGCTGCGAGGTCGTCGTGTCCGGCAAACTGCG
TGGTCAGCGTGCCAAGTCGATGAAATTCGTCGATGGCCTGATGATCCATT
CGGGAGATCCGTGCAACGACTATGTCGAGACCGCCACCCGTCATGTGCTC
CTCCGCCAGGGAGTGCTTGGTATCAAGGTCAAGGTCATGTTGCCCTACGA
CCCCAAGAACAAGATCGGCCCCAAGAAGCCGCTGCCCGACAATGTGTCCG
TTGTGGAGCCCAAGGAGGAGAAGATCTACGAGACGCCCGAGACCGAGTAC
AAGATCCCCCCGCCCAGCAAGCCACTGGACGATCTGTCCGAGGCGAAAGT
TTTGTAAAAGCTTTCTAGACCAT

BS15029.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:35:38
Subject Length Description Subject Range Query Range Score Percent Strand
RpS3-RB 741 CG6779-PB 1..741 17..757 3705 100 Plus
RpS3-RA 741 CG6779-PA 1..741 17..757 3705 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:35:39
Subject Length Description Subject Range Query Range Score Percent Strand
RpS3-RB 1133 CG6779-RB 44..785 17..758 3710 100 Plus
RpS3-RA 854 CG6779-RA 44..785 17..758 3710 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:35:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23359152..23359859 51..758 3540 100 Plus
3R 32079331 3R 23358855..23358890 17..52 180 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:35:37 has no hits.

BS15029.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:24 Download gff for BS15029.complete
Subject Subject Range Query Range Percent Splice Strand
RpS3-RA 1..741 17..757 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:55:44 Download gff for BS15029.complete
Subject Subject Range Query Range Percent Splice Strand
RpS3-RA 47..797 11..762 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:19:30 Download gff for BS15029.complete
Subject Subject Range Query Range Percent Splice Strand
RpS3-RA 44..782 17..755 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:24:24 Download gff for BS15029.complete
Subject Subject Range Query Range Percent Splice Strand
RpS3-RA 47..797 11..762 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:51:25 Download gff for BS15029.complete
Subject Subject Range Query Range Percent Splice Strand
RpS3-RA 44..782 17..755 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:51:25 Download gff for BS15029.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23358855..23358890 17..52 100 -> Plus
3R 23359154..23359856 53..755 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:19:30 Download gff for BS15029.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19184577..19184612 17..52 100 -> Plus
arm_3R 19184876..19185578 53..755 100   Plus

BS15029.pep Sequence

Translation from 16 to 756

> BS15029.pep
MNANLPISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPSRTEI
IIMATKTQQVLGEKGRRIRELTAMVQKRFNFETGRIELYAEKVAARGLCA
IAQAESLRYKLTGGLAVRRACYGVLRYIMESGAKGCEVVVSGKLRGQRAK
SMKFVDGLMIHSGDPCNDYVETATRHVLLRQGVLGIKVKVMLPYDPKNKI
GPKKPLPDNVSVVEPKEEKIYETPETEYKIPPPSKPLDDLSEAKVL*

BS15029.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:07
Subject Length Description Subject Range Query Range Score Percent Strand
RpS3-PB 246 CG6779-PB 1..246 1..246 1252 100 Plus
RpS3-PA 246 CG6779-PA 1..246 1..246 1252 100 Plus