Clone Sequence Records
BS15029.3prime Sequence
771 bp (764 high quality bases) assembled on 2006-10-23
> BS15029.3prime
ATGGTCTAGAAAGCTTTTACAAAACTTTCGCCTCGGACAGATCGTCCAGT
GGCTTGCTGGGCGGGGGGATCTTGTACTCGGTCTCGGGCGTCTCGTAGAT
CTTCTCCTCCTTGGGCTCCACAACGGACACATTGTCGGGCAGCGGCTTCT
TGGGGCCGATCTTGTTCTTGGGGTCGTAGGGCAACATGACCTTGACCTTG
ATACCAAGCACTCCCTGGCGGAGGAGCACATGACGGGTGGCGGTCTCGAC
ATAGTCGTTGCACGGATCTCCCGAATGGATCATCAGGCCATCGACGAATT
TCATCGACTTGGCACGCTGACCACGCAGTTTGCCGGACACGACGACCTCG
CAGCCCTTGGCTCCCGACTCCATGATGTAGCGGAGCACACCATAGCAAGC
ACGACGGACGGCCAGTCCTCCGGTGAGCTTGTACCTCAGCGACTCAGCCT
GGGCAATGGCGCACAGGCCACGAGCGGCCACCTTCTCGGCGTACAACTCA
ATGCGTCCGGTCTCGAAGTTGAAACGCTTCTGCACCATGGCGGTCAGCTC
CCGAATGCGACGGCCCTTCTCGCCCAGCACCTGCTGGGTCTTGGTGGCCA
TGATGATGATCTCAGTGCGAGAGGGGGTCACACGGACCTCCACGCCGGAG
TAGCCATCCTCGGCGAGTTCGCGAGTCAGGAACTCGTTCAATTCAGCCTT
GAAGATGCCATCGGAAACGAACTTGCGTTTCTTGGAAATCGGAAGGTTCG
CATTCATGTCGACTGATAACT
BS15029.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:12:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6779-PA | 741 | RpS3-RA | 1..741 | 757..17 | 3705 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:28:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS3-RB | 1133 | CG6779-RB | 44..785 | 757..16 | 3710 | 100 | Minus |
RpS3-RA | 854 | CG6779-RA | 44..785 | 757..16 | 3710 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:28:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23359152..23359859 | 723..16 | 3540 | 100 | Minus |
3R | 32079331 | 3R | 23358855..23358890 | 757..722 | 180 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:28:32 has no hits.
BS15029.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:14:59 Download gff for
BS15029.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS3-PA | 1..741 | 17..757 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:47:47 Download gff for
BS15029.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6779-PA | 1..741 | 17..757 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:29:04 Download gff for
BS15029.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS3-RA | 38..788 | 12..763 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:20:59 Download gff for
BS15029.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS3-RA | 38..788 | 12..763 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:20:59 Download gff for
BS15029.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23358849..23358890 | 722..763 | 95 | -> | Minus |
3R | 23359154..23359862 | 12..721 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:29:04 Download gff for
BS15029.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19184571..19184612 | 722..763 | 95 | -> | Minus |
arm_3R | 19184876..19185584 | 12..721 | 99 | | Minus |
BS15029.5prime Sequence
771 bp (698 high quality bases) assembled on 2006-10-23
> BS15029.5prime
GAAGTTATCCGTCGACATGAATGCGAACCTTCCGATTTCCAAGAAACGCA
AGTTCGTTTCCGATGGCATCTTCAAGGCTGAATTGAACGAGTTCCTGACT
CGCGAACTCGCCGAGGATGGCTACTCCGGCGTGGAGGTCCGTGTGACCCC
CTCTCGCACTGAGATCATCATCATGGCCACCAAGACCCAGCAGGTGCTGG
GCGAGAAGGGCCGTCGCATTCGGGAGCTGACCGCCATGGTGCAGAAGCGT
TTCAACTTCGAGACCGGACGCATTGAGTTGTACGCCGAGAAGGTGGCCGC
TCGTGGCCTGTGCGCCATTGCCCAGGCTGAGTCGCTGAGGTACAAGCTCA
CCGGAGGACTGGCCGTCCGTCGTGCTTGCTATGGTGTGCTCCGCTACATC
ATGGAGTCGGGAGCCAAGGGCTGCGAGGTCGTCGTGTCCGGCAAACTGCG
TGGTCAGCGTGCCAAGTCGATGAAATTCGTCGATGGCCTGATGATCCATT
CGGGAGATCCGTGCAACGACTATGTCGAGACCGCCACCCGTCATGTGCTC
CTCCGCCAGGGAGTGCTTGGTATCAAGGTCAAGGTCATGTTGCCCTACGA
CCCCAAGAACAAGATCGGCCCCAAGAAGCCGCTGCCCGACAATGTGTCCG
TTGTGGAGCCCAAGGAGGAGAAGATCTACGAGACGCCCGAGACCGAGTAC
AAGATCCCCCCGCCCAGCAAGCCACTGGACGATCTGTCCGAGGCGAAAGT
TTTGTAAAAGCTTTCTAGACC
BS15029.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:12:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6779-PA | 741 | RpS3-RA | 1..741 | 17..757 | 3705 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:11:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS3-RB | 1133 | CG6779-RB | 37..785 | 10..758 | 3715 | 99.7 | Plus |
RpS3-RA | 854 | CG6779-RA | 37..785 | 10..758 | 3715 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:11:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23359152..23359859 | 51..758 | 3540 | 100 | Plus |
3R | 32079331 | 3R | 23358848..23358890 | 10..52 | 185 | 95.3 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:11:55 has no hits.
BS15029.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:15:00 Download gff for
BS15029.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS3-PA | 1..741 | 17..757 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:47:48 Download gff for
BS15029.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6779-PA | 1..741 | 17..757 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:53:30 Download gff for
BS15029.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS3-RA | 37..788 | 10..762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:05:27 Download gff for
BS15029.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS3-RA | 37..788 | 10..762 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:05:27 Download gff for
BS15029.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23358848..23358890 | 10..52 | 95 | -> | Plus |
3R | 23359154..23359862 | 53..762 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:53:30 Download gff for
BS15029.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19184570..19184612 | 10..52 | 95 | -> | Plus |
arm_3R | 19184876..19185584 | 53..762 | 99 | | Plus |
BS15029.complete Sequence
773 bp assembled on 2006-11-01
GenBank Submission: FJ637857
> BS15029.complete
GAAGTTATCAGTCGACATGAATGCGAACCTTCCGATTTCCAAGAAACGCA
AGTTCGTTTCCGATGGCATCTTCAAGGCTGAATTGAACGAGTTCCTGACT
CGCGAACTCGCCGAGGATGGCTACTCCGGCGTGGAGGTCCGTGTGACCCC
CTCTCGCACTGAGATCATCATCATGGCCACCAAGACCCAGCAGGTGCTGG
GCGAGAAGGGCCGTCGCATTCGGGAGCTGACCGCCATGGTGCAGAAGCGT
TTCAACTTCGAGACCGGACGCATTGAGTTGTACGCCGAGAAGGTGGCCGC
TCGTGGCCTGTGCGCCATTGCCCAGGCTGAGTCGCTGAGGTACAAGCTCA
CCGGAGGACTGGCCGTCCGTCGTGCTTGCTATGGTGTGCTCCGCTACATC
ATGGAGTCGGGAGCCAAGGGCTGCGAGGTCGTCGTGTCCGGCAAACTGCG
TGGTCAGCGTGCCAAGTCGATGAAATTCGTCGATGGCCTGATGATCCATT
CGGGAGATCCGTGCAACGACTATGTCGAGACCGCCACCCGTCATGTGCTC
CTCCGCCAGGGAGTGCTTGGTATCAAGGTCAAGGTCATGTTGCCCTACGA
CCCCAAGAACAAGATCGGCCCCAAGAAGCCGCTGCCCGACAATGTGTCCG
TTGTGGAGCCCAAGGAGGAGAAGATCTACGAGACGCCCGAGACCGAGTAC
AAGATCCCCCCGCCCAGCAAGCCACTGGACGATCTGTCCGAGGCGAAAGT
TTTGTAAAAGCTTTCTAGACCAT
BS15029.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:35:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS3-RB | 741 | CG6779-PB | 1..741 | 17..757 | 3705 | 100 | Plus |
RpS3-RA | 741 | CG6779-PA | 1..741 | 17..757 | 3705 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:35:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS3-RB | 1133 | CG6779-RB | 44..785 | 17..758 | 3710 | 100 | Plus |
RpS3-RA | 854 | CG6779-RA | 44..785 | 17..758 | 3710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:35:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23359152..23359859 | 51..758 | 3540 | 100 | Plus |
3R | 32079331 | 3R | 23358855..23358890 | 17..52 | 180 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:35:37 has no hits.
BS15029.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:24 Download gff for
BS15029.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS3-RA | 1..741 | 17..757 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:55:44 Download gff for
BS15029.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS3-RA | 47..797 | 11..762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:19:30 Download gff for
BS15029.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS3-RA | 44..782 | 17..755 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:24:24 Download gff for
BS15029.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS3-RA | 47..797 | 11..762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:51:25 Download gff for
BS15029.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS3-RA | 44..782 | 17..755 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:51:25 Download gff for
BS15029.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23358855..23358890 | 17..52 | 100 | -> | Plus |
3R | 23359154..23359856 | 53..755 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:19:30 Download gff for
BS15029.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19184577..19184612 | 17..52 | 100 | -> | Plus |
arm_3R | 19184876..19185578 | 53..755 | 100 | | Plus |
BS15029.pep Sequence
Translation from 16 to 756
> BS15029.pep
MNANLPISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPSRTEI
IIMATKTQQVLGEKGRRIRELTAMVQKRFNFETGRIELYAEKVAARGLCA
IAQAESLRYKLTGGLAVRRACYGVLRYIMESGAKGCEVVVSGKLRGQRAK
SMKFVDGLMIHSGDPCNDYVETATRHVLLRQGVLGIKVKVMLPYDPKNKI
GPKKPLPDNVSVVEPKEEKIYETPETEYKIPPPSKPLDDLSEAKVL*
BS15029.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS3-PB | 246 | CG6779-PB | 1..246 | 1..246 | 1252 | 100 | Plus |
RpS3-PA | 246 | CG6779-PA | 1..246 | 1..246 | 1252 | 100 | Plus |