Clone Sequence Records
BS15034.3prime Sequence
891 bp (815 high quality bases) assembled on 2006-10-23
> BS15034.3prime
ATGGTCTATAAAGCTTTTATTTCTCCTGAATGATGACCACATCCTGAAGC
AGGACATTGGTCAACTGCAGGAGCTCCTGCTCGTTATGGATGGGCCGGTC
CAGAGGATAACCCAATGGGCGGGCATCACGAAGAGAGGCGGAGCCAATGC
CAATGGTGATAGCGGGAACGACGTCCTGAACCTGCAGCTCAACCAGAGGA
GAAACCACGACCAGGAGTTGCATGGGGAGACCCTCGGGCCTTCCACGGGG
TAGCAGCAAGTGCTGGGGGAAGCGTCCGTTCTCGCCGACCAGCTGTTGGA
TACCCACGACCTGTTGCGCCTGCTGACCCTTCAATTGCAGCATCACTTGG
CGGTAGATCTCCACCAGGGGCGTCACATCGCTAGTTGTCCAGGGGATATC
GATGGACCTGCGATGAATGCGGTTGCGTCCATTCTCCAGCTGCACTTGGA
TGGCATCGAGAAGAACGAAGTCACGTCGGCGCTCATCCAGGGAAGCTCCT
TGCCTTCCCTGTTGATCCTCTGCGGGTCCCAGGAAGATGCGAATAATAGC
ATCCTGATCCTGATCCGAAGTGATGTCCATGTCAATGGTGAAGGCCTTGT
TGTTGAGGCGACGCTGGCGTCCCACAATCTCCTGCTGGATGCCCTGAACC
TGCTGCTCGACCAAGTTGCTCAGGTCCAATTCGTGCTCCTCGATGCGAGT
GCGCAGTTTATCCACACGAACATCGTTGATCGAAACACCGCGCATCTGCA
GTTGCTCCTGGCGGTAGCCTCCAAGGATTTGTTCACGCTGTTCGTCCACG
ATCCTCACAATCCGGCGCAGGGTGTACTGCACGACGGGATCGCTGAGGCG
GATGCCCAAGCCAGTACGATCGATTTGCTCAATGTTGTTGT
BS15034.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:12:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17285-PA | 3090 | Fbp1-RA | 2216..3086 | 891..21 | 4355 | 100 | Minus |
CG17285-PB | 2994 | Fbp1-RB | 2120..2990 | 891..21 | 4355 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:14:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fbp1-RD | 3399 | CG17285-RD | 2304..3178 | 891..17 | 4360 | 99.9 | Minus |
Fbp1-RB | 3465 | CG17285-RB | 2370..3244 | 891..17 | 4360 | 99.9 | Minus |
Fbp1-RA | 3405 | CG17285-RA | 2310..3184 | 891..17 | 4360 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:14:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14094810..14095684 | 17..891 | 4360 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:14:49 has no hits.
BS15034.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:15:11 Download gff for
BS15034.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fbp1-PA | 2216..3090 | 17..891 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:48:01 Download gff for
BS15034.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17285-PB | 2120..2994 | 17..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:20:17 Download gff for
BS15034.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fbp1-RA | 2310..3187 | 11..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:04:56 Download gff for
BS15034.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fbp1-RA | 2310..3187 | 11..891 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:04:56 Download gff for
BS15034.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14094807..14095684 | 11..891 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:20:17 Download gff for
BS15034.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14087907..14088784 | 11..891 | 99 | | Plus |
BS15034.5prime Sequence
866 bp (721 high quality bases) assembled on 2006-10-23
> BS15034.5prime
GAAGTTATCCGTCGACATGAACAGAATCATGCTGTTGGTGGCCTTTGCGG
CCGGCGTTGTGGCTGCTGGAAGGATAACTACGAATCAGGACAGGGTCCAG
GGTATTGACCGCATGTCCTTGGAGGATCTGCAGCTCCAAAAGTTTATCCT
GGATATCGTCCAGAATATTCGTCAGCCTCTACAGCAGAGTGAGCTCATCA
ATCTAGATGTGGGTCTGATTGCAGACAGTCAGCGTTATCGTGGCGGCATT
GATAAGGTGATGCATAACGTCATCGATCTGGATCGCCAGCGTCGCCTCCT
CGACGAGCACCAGGTGTACTCCGTGGGTCGTTTGGAGCATGTGCAGCAGC
TGCGTGGCATATACCGCCTGCTGGCTCGCGCCCAGGACTTTGACACCCTT
CGCCGTAATGTGGTCTACCTGCGCCGTAACATTAACCCTGTCCTGCTGGT
TAATGCCTTGGCTCTGGCCATTCGCGATCGTGAGGACACTCAAGCTCTGA
TCGTGCCCGCTGTCCAGGAGCTGCTCCCCGAACTGTATCTGGATGAGGAA
GTGATTCAGCAGGTGCGCAGCGTCCTAAGGGAACAAACCCAGCGCCCATC
GCTCATGGACATCGTGGGTATGCGCCAGCGGGCTATGAACCCAGTGATGA
GCATCCTGATGCCCTGGAGGGAGATCCACATGCAGATGGCTCTAAGGAAA
CAGCAGAACATCCAGAACGTTTTGGGCCAGAAACGCGTCGTTGTCCGTGC
CGAGAACCAGGGACAGGTTGAGGGCACCTCTCTGCTGACGGACGATATTG
AGTTGCAGAACTTTGTTCAAAATCTCATACAGGAACTTGCCCTTCTGGAA
GATGTTACTCAGTTGG
BS15034.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:12:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17285-PA | 3090 | Fbp1-RA | 1..850 | 17..866 | 4225 | 99.8 | Plus |
CG17285-PB | 2994 | Fbp1-RB | 1..754 | 113..866 | 3745 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:37:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fbp1-RA | 3405 | CG17285-RA | 95..944 | 17..866 | 4235 | 99.9 | Plus |
Fbp1-RD | 3399 | CG17285-RD | 95..938 | 17..866 | 4135 | 99.2 | Plus |
Fbp1-RB | 3465 | CG17285-RB | 245..1004 | 107..866 | 3785 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:37:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14097050..14097809 | 866..107 | 3785 | 99.9 | Minus |
3L | 28110227 | 3L | 14097869..14097959 | 107..17 | 455 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 12:37:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Burdock | 6411 | Burdock DMU89994 6411bp Derived from U89994 (g1905850) (Rel. 51, Last updated, Version 1). | 1821..1849 | 601..629 | 109 | 86.2 | Plus |
BS15034.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:15:12 Download gff for
BS15034.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fbp1-PA | 1..850 | 17..866 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:48:02 Download gff for
BS15034.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17285-PA | 1..850 | 17..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:03:14 Download gff for
BS15034.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fbp1-RA | 90..944 | 12..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:17:13 Download gff for
BS15034.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fbp1-RA | 90..944 | 12..866 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:17:13 Download gff for
BS15034.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14097050..14097808 | 108..866 | 99 | <- | Minus |
3L | 14097869..14097964 | 12..107 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:03:14 Download gff for
BS15034.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14090150..14090908 | 108..866 | 99 | <- | Minus |
arm_3L | 14090969..14091064 | 12..107 | 97 | | Minus |
BS15034.complete Sequence
3122 bp assembled on 2008-08-14
GenBank Submission: KX806538
> BS15034.complete
GAAGTTATCCGTCGACATGAACAGAATCATGCTGTTGGTGGCCTTTGCGG
CCGGCGTTGTGGCTGCTGGAAGGATAACTACGAATCAGGACAGGGTCCAG
GGTATTGACCGCATGTCCTTGGAGGATCTGCAGCTCCAAAAGTTTATCCT
GGATATCGTCCAGAATATTCGTCAGCCTCTACAGCAGAGTGAGCTCATCA
ATCTAGATGTGGGTCTGATTGCAGACAGTCAGCGTTATCGTGGCGGCATT
GATAAGGTGATGCATAACGTCATCGATCTGGATCGCCAGCGTCGCCTCCT
CGACGAGCACCAGGTGTACTCCGTGGGTCGTTTGGAGCATGTGCAGCAGC
TGCGTGGCATATACCGCCTGCTGGCTCGCGCCCAGGACTTTGACACCCTT
CGCCGTAATGTGGTCTACCTGCGCCGTAACATTAACCCTGTCCTGCTGGT
TAATGCCTTGGCTCTGGCCATTCGCGATCGTGAGGACACTCAAGCTCTGA
TCGTGCCCGCTGTCCAGGAGCTGCTCCCCGAACTGTATCTGGATGAGGAA
GTGATTCAGCAGGTGCGCAGCGTCCTAAGGGAACAAACCCAGCGCCCATC
GCTCATGGACATCGTGGGTATGCGCCAGCGGGCTATGAACCCAGTGATGA
GCATCCTGATGCCCTGGAGGGAGATCCACATGCAGATGGCTCTAAGGAAA
CAGCAGAACATCCAGAACGTTTTGGGCCAGAAACGCGTCGTTGTCCGTGC
CGAGAACCAGGGACAGGTTGAGGGCACCTCTCTGCTGACGGACGATATTG
AGTTGCAGAACTTTGTTCAAAATCTCATACAGGAACTTGCCCTTCTGGAG
GATGTTACTCAGTTGGAGCAGAGCCAATTGATCAACAATGATCAACGTGA
AGAGCAATGGGTCGGTCGTCAGCGCGTGCAGTACCAAGATAACAACCAGG
AAAGAGATCTGGGTCAGGATGTAGACACTGGACGCCTACTCCGTGTGAGT
CGCCGCCGCCTTCTGGAGCAACAGGATGAATATCAGGGTCAGAACATCTA
TGGAAACCAAAAGGATCGTTTCCAGCGTCTCCTCCGCCGGGATGACGACA
ACGACGACAATGATGACGATGATGATCAGGATATTCGCATGGGTCGTGTC
CAGCTGCAGCGTGGTATCAGCCAGGGAGGTCTCCGCATTGGAGGAGCTCA
TAACCTGCCCACCGTTAGCGTGAACAGTGACCGTCTGCTTCACGTGAGCC
GTCGCCGTTTGAACGCCATCCAACAAGATCAGCAGCAGGATCAGCTGAAC
GGTCGCCAGCGTTTCATGGGTTTGGTGAGAGGAGACCGCCTCAGTGAGGG
TCGTCGTGTTGGTCAGCTGGATGATGTGCGTCAGGAGCGTCAGAACAACT
GGCAGAAGCAGGACTACATCTTGACACAAGGTCGCACTTTCGGAGTCCAG
CAGGAGCGTCAAAACTATGCCGATCAGTTGGAGAGCGTGAGCCGCGACGA
CGAGCGATTGGTGCATATTAACCGACGCCGCCTCAACCAGGACAACCAGG
ACATCCAGCAACAACAGATGCATTTTCCCCGCAGGATTAACTCCATTGGC
GAGGGTCGCCGCGTCATGGGTGAGCGCCCCATCCAAGATGAGGACATTCT
GAAGCTAATCCGCGGCGAAAACCGTCTGAAGCTGATGACCGATGATGAGA
TCCTTGAGATGCTGCAAAGGAACCGCCAGCAGCGTCTGCAAAAGCACCAG
AACGATGATGATGACGATGTCAACGATGACGATGTGAATGTGGTGCACCG
ACAGGGACTACGAAGCCGCCGCAGCCTTCCCAATCTCCGTCAGCAAAACA
ACCGCCTCAGCGAAATTGTCCTGCACAATCTTCGCCAGCTGGTCGCACGT
CTTAACCAGGAAAGCATCGCCCAGGGACAGCTGATCGAAGAGCAGCAGCA
GTTGATCAACAATCCCCGCCTGACGCAATCCGAGCGATATGCCCTCCGCT
TGAACCAAATCCGAATCAATTCCCAGCGCAGCCGTCAAGTCCTCGCCCAG
ATCGGCCAGATTGAGCAGCGTATCCAGGAGGTTATTGGTCAGGTGCTGAA
CCAGGTGAATGTCAACTCGCTGCGTGGCCAGGTAATCGATCAACGCCAAG
TGGAATCCCTGATCGCCGATGTACTGCTGGGTCGCCTTGGTCAGGTTGGC
ATCATGACCATTATCCGCCAGGTGGTCCAGGACAACAACATTGAGCAAAT
CGATCGTACTGGCTTGGGCATCCGCCTCAGCGATCCCGTCGTGCAGTACA
CCCTGCGCCGGATTGTGAGGATCGTGGACGAACAGCGTGAACAAATCCTT
GGAGGCTACCGCCAGGAGCAACTGCAGATGCGCGGTGTTTCGATCAACGA
TGTTCGTGTGGATAAACTGCGCACTCGCATCGAGGAGCACGAATTGGACC
TGAGCAACTTGGTCGAGCAGCAGGTTCAGGGCATCCAGCAGGAGATTGTG
GGACGCCAGCGTCGCCTCAACAACAAGGCCTTCACCATTGACATGGACAT
CACTTCGGATCAGGATCAGGATGCTATTATTCGCATCTTCCTGGGACCCG
CAGAGGATCAACAGGGAAGGCAAGGAGCTTCCCTGGATGAGCGCCGACGT
GACTTCGTTCTTCTCGATGCCATCCAAGTGCAGCTGGAGAATGGACGCAA
CCGCATTCATCGCAGGTCCATCGATATCCCCTGGACAACTAGCGATGTGA
CGCCCCTGGTGGAGATCTACCGCCAAGTGATGCTGCAATTGAAGGGTCAG
CAGGCGCAACAGGTCGTGGGTATCCAACAGCTGGTCGGCGAGAACGGACG
CTTCCCCCAGCACTTGCTGCTACCCCGTGGAAGGCCCGAGGGTCTCCCCA
TGCAACTCCTGGTCGTGGTTTCTCCTCTGGTTGAGCTGCAGGTTCAGGAC
GTCGTTCCCGCTATCACCATTGGCATTGGCTCCGCCTCTCTTCGTGATGC
CCGCCCATTGGGTTATCCTCTGGACCGGCCCATCCATAACGAGCAGGAGC
TCCTGCAGTTGACCAATGTCCTGCTTCAGGATGTGGTCATCATTCAGGAG
AACTAAAAGCTTTCTAGACCAT
BS15034.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:03:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fbp1-RA | 3090 | CG17285-PA | 1..3090 | 17..3106 | 15450 | 100 | Plus |
Fbp1-RD | 3084 | CG17285-PD | 1..3084 | 17..3106 | 15325 | 99.8 | Plus |
Fbp1-RB | 2994 | CG17285-PB | 1..2994 | 113..3106 | 14970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fbp1-RA | 3405 | CG17285-RA | 95..3184 | 17..3106 | 15450 | 100 | Plus |
Fbp1-RD | 3399 | CG17285-RD | 95..3178 | 17..3106 | 15325 | 99.8 | Plus |
Fbp1-RB | 3465 | CG17285-RB | 245..3244 | 107..3106 | 15000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14094810..14097809 | 3106..107 | 15000 | 100 | Minus |
3L | 28110227 | 3L | 14097869..14097959 | 107..17 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:03:32 has no hits.
BS15034.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:48:28 Download gff for
BS15034.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fbp1-RA | 93..3190 | 12..3112 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:37:46 Download gff for
BS15034.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fbp1-RA | 95..3182 | 17..3104 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:13:57 Download gff for
BS15034.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fbp1-RA | 98..3185 | 17..3104 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:27 Download gff for
BS15034.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fbp1-RA | 95..3182 | 17..3104 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:27 Download gff for
BS15034.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14094812..14097808 | 108..3104 | 100 | <- | Minus |
3L | 14097869..14097959 | 17..107 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:37:46 Download gff for
BS15034.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14087912..14090908 | 108..3104 | 100 | <- | Minus |
arm_3L | 14090969..14091059 | 17..107 | 100 | | Minus |
BS15034.pep Sequence
Translation from 16 to 3105
> BS15034.pep
MNRIMLLVAFAAGVVAAGRITTNQDRVQGIDRMSLEDLQLQKFILDIVQN
IRQPLQQSELINLDVGLIADSQRYRGGIDKVMHNVIDLDRQRRLLDEHQV
YSVGRLEHVQQLRGIYRLLARAQDFDTLRRNVVYLRRNINPVLLVNALAL
AIRDREDTQALIVPAVQELLPELYLDEEVIQQVRSVLREQTQRPSLMDIV
GMRQRAMNPVMSILMPWREIHMQMALRKQQNIQNVLGQKRVVVRAENQGQ
VEGTSLLTDDIELQNFVQNLIQELALLEDVTQLEQSQLINNDQREEQWVG
RQRVQYQDNNQERDLGQDVDTGRLLRVSRRRLLEQQDEYQGQNIYGNQKD
RFQRLLRRDDDNDDNDDDDDQDIRMGRVQLQRGISQGGLRIGGAHNLPTV
SVNSDRLLHVSRRRLNAIQQDQQQDQLNGRQRFMGLVRGDRLSEGRRVGQ
LDDVRQERQNNWQKQDYILTQGRTFGVQQERQNYADQLESVSRDDERLVH
INRRRLNQDNQDIQQQQMHFPRRINSIGEGRRVMGERPIQDEDILKLIRG
ENRLKLMTDDEILEMLQRNRQQRLQKHQNDDDDDVNDDDVNVVHRQGLRS
RRSLPNLRQQNNRLSEIVLHNLRQLVARLNQESIAQGQLIEEQQQLINNP
RLTQSERYALRLNQIRINSQRSRQVLAQIGQIEQRIQEVIGQVLNQVNVN
SLRGQVIDQRQVESLIADVLLGRLGQVGIMTIIRQVVQDNNIEQIDRTGL
GIRLSDPVVQYTLRRIVRIVDEQREQILGGYRQEQLQMRGVSINDVRVDK
LRTRIEEHELDLSNLVEQQVQGIQQEIVGRQRRLNNKAFTIDMDITSDQD
QDAIIRIFLGPAEDQQGRQGASLDERRRDFVLLDAIQVQLENGRNRIHRR
SIDIPWTTSDVTPLVEIYRQVMLQLKGQQAQQVVGIQQLVGENGRFPQHL
LLPRGRPEGLPMQLLVVVSPLVELQVQDVVPAITIGIGSASLRDARPLGY
PLDRPIHNEQELLQLTNVLLQDVVIIQEN*
BS15034.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:47:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fbp1-PA | 1029 | CG17285-PA | 1..1029 | 1..1029 | 5153 | 100 | Plus |
Fbp1-PD | 1027 | CG17285-PD | 1..1027 | 1..1029 | 5130 | 99.8 | Plus |
Fbp1-PB | 997 | CG17285-PB | 1..997 | 33..1029 | 4999 | 100 | Plus |
Lsp1alpha-PA | 816 | CG2559-PA | 346..780 | 610..1025 | 358 | 28.1 | Plus |
Lsp1gamma-PA | 772 | CG6821-PA | 315..729 | 612..1006 | 333 | 28 | Plus |
Lsp1alpha-PA | 816 | CG2559-PA | 33..192 | 38..198 | 192 | 26.1 | Plus |