Clone BS15036 Report

Search the DGRC for BS15036

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:150
Well:36
Vector:pDNR-Dual
Associated Gene/TranscriptCG7142-RA
Protein status:BS15036.pep: full length peptide match
Sequenced Size:1037

Clone Sequence Records

BS15036.3prime Sequence

553 bp (387 high quality bases) assembled on 2006-10-23

> BS15036.3prime
ATGGTCTAGAAAGCTTTTACATAATGTGGGTGGCCGTGCTGATGACCTGG
TTGATCCACTCCGTGAAGGCGGAGACGCGAACAAAGACCGAGGGCGCGTT
CTTCTGGCCGCATGGCATCTTGCCCCAGGACACAATGCCGATGACAATGT
TGGCCTGCTCGAAGTGCTCCTCGCAGCACTGCTGAATCAATGGTCCGCCG
GAGTCGGCGGTGCAGATGCTAACGCCTCCTGTCAGCGGGCCAGTGCACAG
ATTGGTCTCGTGCAATGGGAGTCCGGAGCGGGCGAGAATCTGTTCGCATA
ACTCCATGTCCAGTATGGGCATGTTGGCCTCCTGCAGGCGGTGCGGATAA
TTGGGTACCGCAGTCATCGAGACATTGCCCCAACCGTACAAAGTTCCATA
TCCCTCCGGCTGGGCATCCTGCTCCGGCAGCGTTGCTGGCTGGACATAGG
TGTCAAAGACCACGGGCTCCTTGGTGTAAATTAGCGCGATGTCGTAGGGA
TTCACTCCGCCGAGATAGAGCTCGTGTCGCACGTAGTAGTCGATGTGTCG
CAT

BS15036.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:12:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG7142-PA 1005 CG7142-RA 469..1005 553..17 2635 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:41:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG7142-RA 1342 CG7142-RA 706..1242 553..17 2655 99.6 Minus
Phae1-RB 1248 CG16996-RB 838..904 257..191 185 85.1 Minus
Phae1-RA 904 CG16996-RA 636..702 257..191 185 85.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:41:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18278281..18278817 17..553 2655 99.6 Plus
2L 23513712 2L 12110254..12110320 257..191 185 85.1 Minus
Blast to na_te.dros performed on 2015-02-13 12:41:06 has no hits.

BS15036.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:15:14 Download gff for BS15036.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7142-PA 469..1005 17..553 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:48:05 Download gff for BS15036.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7142-PA 469..1005 17..553 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:03:41 Download gff for BS15036.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7142-RA 714..1250 17..553 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:19:43 Download gff for BS15036.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7142-RA 706..1242 17..553 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:19:43 Download gff for BS15036.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 18278281..18278817 17..553 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:03:41 Download gff for BS15036.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14104003..14104539 17..553 99   Plus

BS15036.5prime Sequence

611 bp (385 high quality bases) assembled on 2006-10-23

> BS15036.5prime
GAAGTTATCATTCGAGATGCTCTTATCCTACCGATGCATCTACTCGGTGC
TGCTGTCCACCATAGCCAGTATTATGGTGGTACTAAGCTCTGCATCCTCC
GGCTCCATACAGCTGCCCACTGTGCGCAAGTGCGGCGGTGGCAGATCTGC
GGGAGCAGCCCACACAATGGCCATGAATTTGGCGGCCTACGGGCTGCTGG
AGAATCGGATTAGCACTCTGGAAGCACCGCGACAAACGCACTGGACGAAA
AAGTTCCTGGCCAAGCGGGAGGCGACTCCCCATTCGGCGCCGTATGTGGT
CAGCATCCAGATGATGACACCCGATCAGGGACTGGTCCACTACTGTGCCG
GCACCATCATCAACGAGCACTGGATCCTGACGGCGGCCCACTGCCTCAGC
TCACCGCAGGCGGTGGAGAACTCGGTCATTGTGGCGGGCAGCCACGATAT
TCACGATCAGAAGGGCGAGGCGAGCAACATTCAAATGCGACACATCGACT
ACTACGTGCGACACGAGCTCTATCTCGGCGGAGTGAATCCCTACGACATC
GCGCTAATTTACACCAAGGAGCCCCTGGTCTTTGACACCTATGTCCAGCC
AGCAACGCTGC

BS15036.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:12:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG7142-PA 1005 CG7142-RA 1..595 17..611 2975 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:12:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG7142-RA 1342 CG7142-RA 238..832 17..611 2975 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:12:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18278691..18279285 611..17 2975 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:12:33 has no hits.

BS15036.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:15:15 Download gff for BS15036.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7142-PA 1..595 17..611 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:48:07 Download gff for BS15036.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7142-PA 1..595 17..611 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:53:32 Download gff for BS15036.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7142-RA 242..840 9..611 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:06:41 Download gff for BS15036.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7142-RA 234..832 9..611 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:06:41 Download gff for BS15036.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18278691..18279289 9..611 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:53:32 Download gff for BS15036.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14104413..14105011 9..611 99   Minus

BS15036.complete Sequence

1037 bp assembled on 2010-02-09

GenBank Submission: KX802640

> BS15036.complete
GAAGTTATCAGTCGACATGCTCTTATCCTACCGATGCATCTACTCGGTGC
TGCTGTCCACCATAGCCAGTATTATGGTGGTACTAAGCTCTGCATCCTCC
GGCTCCATACAGCTGCCCACTGTGCGCAAGTGCGGCGGTGGCAGATCTGC
GGGAGCAGCCCACACAATGGCCATGAATTTGGCGGCCTACGGGCTGCTGG
AGAATCGGATTAGCACTCTGGAAGCACCGCGACAAACGCACTGGACGAAA
AAGTTCCTGGCCAAGCGGGAGGCGACTCCCCATTCGGCGCCGTATGTGGT
CAGCATCCAGATGATGACACCCGATCAGGGACTGGTCCACTACTGTGCCG
GCACCATCATCAACGAGCACTGGATCCTGACGGCGGCCCACTGCCTCAGC
TCACCGCAGGCGGTGGAGAACTCGGTCATTGTGGCGGGCAGCCACGATAT
TCACGATCAGAAGGGCGAGGCGAGCAACATTCAAATGCGACACATCGACT
ACTACGTGCGACACGAGCTCTATCTCGGCGGAGTGAATCCCTACGACATC
GCGCTAATTTACACCAAGGAGCCCCTGGTCTTTGACACCTATGTCCAGCC
AGCAACGCTGCCGGAGCAGGATGCCCAGCCGGAGGGATATGGAACTTTGT
ACGGCTGGGGCAATGTCTCGATGACTGCGGTACCCAATTATCCGCACCGC
CTGCAGGAGGCCAACATGCCCATACTGGACATGGAGTTATGCGAACAGAT
TCTCGCCCGCTCCGGACTCCCATTGCACGAGACCAATCTGTGCACTGGCC
CGCTGACAGGAGGCGTTAGCATCTGCACCGCCGACTCCGGCGGACCATTG
ATTCAGCAGTGCTGCGAGGAGCACTTCGAGCAGGCCAACATTGTCATCGG
CATTGTGTCCTGGGGCAAGATGCCATGCGGCCAGAAGAACGCGCCCTCGG
TCTTTGTTCGCGTCTCCGCCTTCACGGAGTGGATCAACCAGGTCATCAGC
ACGGCCACCCACATTATGTAAAAGCTTTCTAGACCAT

BS15036.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:06:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG7142-RA 1005 CG7142-PA 1..1005 17..1021 5025 100 Plus
Phae1-RB 813 CG16996-PB 612..678 781..847 185 85.1 Plus
Phae1-RA 813 CG16996-PA 612..678 781..847 185 85.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:06:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG7142-RA 1342 CG7142-RA 237..1242 16..1021 5030 100 Plus
Phae1-RB 1248 CG16996-RB 838..904 781..847 185 85.1 Plus
Phae1-RA 904 CG16996-RA 636..702 781..847 185 85.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:06:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18278281..18279286 1021..16 5030 100 Minus
2L 23513712 2L 12110254..12110320 781..847 185 85.1 Plus
Blast to na_te.dros performed on 2014-11-27 13:06:15 has no hits.

BS15036.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:59 Download gff for BS15036.complete
Subject Subject Range Query Range Percent Splice Strand
CG7142-RA 246..1248 17..1019 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:26:52 Download gff for BS15036.complete
Subject Subject Range Query Range Percent Splice Strand
CG7142-RA 246..1248 17..1019 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:12:48 Download gff for BS15036.complete
Subject Subject Range Query Range Percent Splice Strand
CG7142-RA 246..1248 17..1019 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:10:57 Download gff for BS15036.complete
Subject Subject Range Query Range Percent Splice Strand
CG7142-RA 238..1240 17..1019 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:57 Download gff for BS15036.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18278283..18279285 17..1019 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:26:52 Download gff for BS15036.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14104005..14105007 17..1019 100   Minus

BS15036.pep Sequence

Translation from 16 to 1020

> BS15036.pep
MLLSYRCIYSVLLSTIASIMVVLSSASSGSIQLPTVRKCGGGRSAGAAHT
MAMNLAAYGLLENRISTLEAPRQTHWTKKFLAKREATPHSAPYVVSIQMM
TPDQGLVHYCAGTIINEHWILTAAHCLSSPQAVENSVIVAGSHDIHDQKG
EASNIQMRHIDYYVRHELYLGGVNPYDIALIYTKEPLVFDTYVQPATLPE
QDAQPEGYGTLYGWGNVSMTAVPNYPHRLQEANMPILDMELCEQILARSG
LPLHETNLCTGPLTGGVSICTADSGGPLIQQCCEEHFEQANIVIGIVSWG
KMPCGQKNAPSVFVRVSAFTEWINQVISTATHIM*

BS15036.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:10:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG7142-PA 334 CG7142-PA 1..334 1..334 1768 100 Plus
Phae1-PB 270 CG16996-PB 42..270 86..328 607 50.4 Plus
Phae1-PA 270 CG16996-PA 42..270 86..328 607 50.4 Plus
Phae2-PC 265 CG16997-PC 36..259 84..323 597 49.4 Plus
Phae2-PB 265 CG16997-PB 36..259 84..323 597 49.4 Plus