Clone Sequence Records
BS15036.3prime Sequence
553 bp (387 high quality bases) assembled on 2006-10-23
> BS15036.3prime
ATGGTCTAGAAAGCTTTTACATAATGTGGGTGGCCGTGCTGATGACCTGG
TTGATCCACTCCGTGAAGGCGGAGACGCGAACAAAGACCGAGGGCGCGTT
CTTCTGGCCGCATGGCATCTTGCCCCAGGACACAATGCCGATGACAATGT
TGGCCTGCTCGAAGTGCTCCTCGCAGCACTGCTGAATCAATGGTCCGCCG
GAGTCGGCGGTGCAGATGCTAACGCCTCCTGTCAGCGGGCCAGTGCACAG
ATTGGTCTCGTGCAATGGGAGTCCGGAGCGGGCGAGAATCTGTTCGCATA
ACTCCATGTCCAGTATGGGCATGTTGGCCTCCTGCAGGCGGTGCGGATAA
TTGGGTACCGCAGTCATCGAGACATTGCCCCAACCGTACAAAGTTCCATA
TCCCTCCGGCTGGGCATCCTGCTCCGGCAGCGTTGCTGGCTGGACATAGG
TGTCAAAGACCACGGGCTCCTTGGTGTAAATTAGCGCGATGTCGTAGGGA
TTCACTCCGCCGAGATAGAGCTCGTGTCGCACGTAGTAGTCGATGTGTCG
CAT
BS15036.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:12:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7142-PA | 1005 | CG7142-RA | 469..1005 | 553..17 | 2635 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:41:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7142-RA | 1342 | CG7142-RA | 706..1242 | 553..17 | 2655 | 99.6 | Minus |
Phae1-RB | 1248 | CG16996-RB | 838..904 | 257..191 | 185 | 85.1 | Minus |
Phae1-RA | 904 | CG16996-RA | 636..702 | 257..191 | 185 | 85.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:41:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18278281..18278817 | 17..553 | 2655 | 99.6 | Plus |
2L | 23513712 | 2L | 12110254..12110320 | 257..191 | 185 | 85.1 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:41:06 has no hits.
BS15036.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:15:14 Download gff for
BS15036.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7142-PA | 469..1005 | 17..553 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:48:05 Download gff for
BS15036.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7142-PA | 469..1005 | 17..553 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:03:41 Download gff for
BS15036.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7142-RA | 714..1250 | 17..553 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:19:43 Download gff for
BS15036.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7142-RA | 706..1242 | 17..553 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:19:43 Download gff for
BS15036.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18278281..18278817 | 17..553 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:03:41 Download gff for
BS15036.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14104003..14104539 | 17..553 | 99 | | Plus |
BS15036.5prime Sequence
611 bp (385 high quality bases) assembled on 2006-10-23
> BS15036.5prime
GAAGTTATCATTCGAGATGCTCTTATCCTACCGATGCATCTACTCGGTGC
TGCTGTCCACCATAGCCAGTATTATGGTGGTACTAAGCTCTGCATCCTCC
GGCTCCATACAGCTGCCCACTGTGCGCAAGTGCGGCGGTGGCAGATCTGC
GGGAGCAGCCCACACAATGGCCATGAATTTGGCGGCCTACGGGCTGCTGG
AGAATCGGATTAGCACTCTGGAAGCACCGCGACAAACGCACTGGACGAAA
AAGTTCCTGGCCAAGCGGGAGGCGACTCCCCATTCGGCGCCGTATGTGGT
CAGCATCCAGATGATGACACCCGATCAGGGACTGGTCCACTACTGTGCCG
GCACCATCATCAACGAGCACTGGATCCTGACGGCGGCCCACTGCCTCAGC
TCACCGCAGGCGGTGGAGAACTCGGTCATTGTGGCGGGCAGCCACGATAT
TCACGATCAGAAGGGCGAGGCGAGCAACATTCAAATGCGACACATCGACT
ACTACGTGCGACACGAGCTCTATCTCGGCGGAGTGAATCCCTACGACATC
GCGCTAATTTACACCAAGGAGCCCCTGGTCTTTGACACCTATGTCCAGCC
AGCAACGCTGC
BS15036.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:12:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7142-PA | 1005 | CG7142-RA | 1..595 | 17..611 | 2975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:12:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7142-RA | 1342 | CG7142-RA | 238..832 | 17..611 | 2975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:12:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18278691..18279285 | 611..17 | 2975 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:12:33 has no hits.
BS15036.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:15:15 Download gff for
BS15036.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7142-PA | 1..595 | 17..611 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:48:07 Download gff for
BS15036.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7142-PA | 1..595 | 17..611 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:53:32 Download gff for
BS15036.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7142-RA | 242..840 | 9..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:06:41 Download gff for
BS15036.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7142-RA | 234..832 | 9..611 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:06:41 Download gff for
BS15036.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18278691..18279289 | 9..611 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:53:32 Download gff for
BS15036.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14104413..14105011 | 9..611 | 99 | | Minus |
BS15036.complete Sequence
1037 bp assembled on 2010-02-09
GenBank Submission: KX802640
> BS15036.complete
GAAGTTATCAGTCGACATGCTCTTATCCTACCGATGCATCTACTCGGTGC
TGCTGTCCACCATAGCCAGTATTATGGTGGTACTAAGCTCTGCATCCTCC
GGCTCCATACAGCTGCCCACTGTGCGCAAGTGCGGCGGTGGCAGATCTGC
GGGAGCAGCCCACACAATGGCCATGAATTTGGCGGCCTACGGGCTGCTGG
AGAATCGGATTAGCACTCTGGAAGCACCGCGACAAACGCACTGGACGAAA
AAGTTCCTGGCCAAGCGGGAGGCGACTCCCCATTCGGCGCCGTATGTGGT
CAGCATCCAGATGATGACACCCGATCAGGGACTGGTCCACTACTGTGCCG
GCACCATCATCAACGAGCACTGGATCCTGACGGCGGCCCACTGCCTCAGC
TCACCGCAGGCGGTGGAGAACTCGGTCATTGTGGCGGGCAGCCACGATAT
TCACGATCAGAAGGGCGAGGCGAGCAACATTCAAATGCGACACATCGACT
ACTACGTGCGACACGAGCTCTATCTCGGCGGAGTGAATCCCTACGACATC
GCGCTAATTTACACCAAGGAGCCCCTGGTCTTTGACACCTATGTCCAGCC
AGCAACGCTGCCGGAGCAGGATGCCCAGCCGGAGGGATATGGAACTTTGT
ACGGCTGGGGCAATGTCTCGATGACTGCGGTACCCAATTATCCGCACCGC
CTGCAGGAGGCCAACATGCCCATACTGGACATGGAGTTATGCGAACAGAT
TCTCGCCCGCTCCGGACTCCCATTGCACGAGACCAATCTGTGCACTGGCC
CGCTGACAGGAGGCGTTAGCATCTGCACCGCCGACTCCGGCGGACCATTG
ATTCAGCAGTGCTGCGAGGAGCACTTCGAGCAGGCCAACATTGTCATCGG
CATTGTGTCCTGGGGCAAGATGCCATGCGGCCAGAAGAACGCGCCCTCGG
TCTTTGTTCGCGTCTCCGCCTTCACGGAGTGGATCAACCAGGTCATCAGC
ACGGCCACCCACATTATGTAAAAGCTTTCTAGACCAT
BS15036.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:06:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7142-RA | 1005 | CG7142-PA | 1..1005 | 17..1021 | 5025 | 100 | Plus |
Phae1-RB | 813 | CG16996-PB | 612..678 | 781..847 | 185 | 85.1 | Plus |
Phae1-RA | 813 | CG16996-PA | 612..678 | 781..847 | 185 | 85.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:06:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7142-RA | 1342 | CG7142-RA | 237..1242 | 16..1021 | 5030 | 100 | Plus |
Phae1-RB | 1248 | CG16996-RB | 838..904 | 781..847 | 185 | 85.1 | Plus |
Phae1-RA | 904 | CG16996-RA | 636..702 | 781..847 | 185 | 85.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:06:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18278281..18279286 | 1021..16 | 5030 | 100 | Minus |
2L | 23513712 | 2L | 12110254..12110320 | 781..847 | 185 | 85.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:06:15 has no hits.
BS15036.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:59 Download gff for
BS15036.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7142-RA | 246..1248 | 17..1019 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:26:52 Download gff for
BS15036.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7142-RA | 246..1248 | 17..1019 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:12:48 Download gff for
BS15036.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7142-RA | 246..1248 | 17..1019 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:10:57 Download gff for
BS15036.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7142-RA | 238..1240 | 17..1019 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:57 Download gff for
BS15036.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18278283..18279285 | 17..1019 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:26:52 Download gff for
BS15036.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14104005..14105007 | 17..1019 | 100 | | Minus |
BS15036.pep Sequence
Translation from 16 to 1020
> BS15036.pep
MLLSYRCIYSVLLSTIASIMVVLSSASSGSIQLPTVRKCGGGRSAGAAHT
MAMNLAAYGLLENRISTLEAPRQTHWTKKFLAKREATPHSAPYVVSIQMM
TPDQGLVHYCAGTIINEHWILTAAHCLSSPQAVENSVIVAGSHDIHDQKG
EASNIQMRHIDYYVRHELYLGGVNPYDIALIYTKEPLVFDTYVQPATLPE
QDAQPEGYGTLYGWGNVSMTAVPNYPHRLQEANMPILDMELCEQILARSG
LPLHETNLCTGPLTGGVSICTADSGGPLIQQCCEEHFEQANIVIGIVSWG
KMPCGQKNAPSVFVRVSAFTEWINQVISTATHIM*
BS15036.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:10:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7142-PA | 334 | CG7142-PA | 1..334 | 1..334 | 1768 | 100 | Plus |
Phae1-PB | 270 | CG16996-PB | 42..270 | 86..328 | 607 | 50.4 | Plus |
Phae1-PA | 270 | CG16996-PA | 42..270 | 86..328 | 607 | 50.4 | Plus |
Phae2-PC | 265 | CG16997-PC | 36..259 | 84..323 | 597 | 49.4 | Plus |
Phae2-PB | 265 | CG16997-PB | 36..259 | 84..323 | 597 | 49.4 | Plus |