Clone Sequence Records
BS15038.3prime Sequence
882 bp (847 high quality bases) assembled on 2006-10-23
> BS15038.3prime
ATGGTCTAGAAAGCTTTTAATATACATCATAGCCATACATGGGTGCCTCC
ATGTAAGCCTTCTGCTGGTCCGTGGAATTGCGACGGATTCTCCGGCCAAT
GGGCTCCAAGTCTGCATAGCATTTGGGAAAGACACGTTCCACAGCAGCGA
CGGCATCTGCTTTGCTAATATTGCGAACAGCGAGCACGGAAGCTAGGGCT
TTGGACTTGACGCAGTTCTGATGCGCTTCCTTGACATTAAATGGCGAGGC
ATCTCCTTGGAACATGGCGCTCAAGAAGGAGCAATGCGCCAGGTTTGCCG
CCCTGATCTCTGTGCAGGCCAGGTGGTCCACGTTGCGGAAGTCCATGTCG
TTATTGCAGTAGTCGAACATGTGAATCATCTCGTGCGTTAGCACTCCATG
GACCATGCTCTTGTTCCTGGCCATATTCTGGCAGACCACGATCTGGTTGA
GCTTGGGATCGTAACCGCCGGTGACTGTGGGGTCGCACACCTCGCATGAG
ATGTGTCGGCGCAGATCGATGGGACAACCGGAACTTTTCAGTGCTCCCAT
CATCAGTTTGACCAGCGGACCATTTTTGACACACCAGTACACATTCTCCT
CGCACTTGAAACGATCAATGTTCTCCTGCCCCTCCAAGCCGAACAGGACT
CGTGTCCATTTGGGCTTGAAGGTTTCGCCCCTTCGCTCCGGATAAAGGTC
GTAGCCCCAATCCTTTTGAGCAGTGGTGGTTTCTTCGGTGCTCGTCTCCT
TACTGGCAGATGCTTTTTCAGTCTTTGCATTTTGTTTTTCTTGCGCTGCG
CCGGTGATGGCTTCTATTGCCTCGGGCGCTGTTGCCTCTTTGGCCCACAC
TTTAGTCAGGAACTCCATGTCGACTGATAACT
BS15038.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:12:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5131-PA | 852 | CG5131-RA | 1..852 | 868..17 | 4260 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:16:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5131-RA | 1051 | CG5131-RA | 78..930 | 868..16 | 4265 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:15:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17484578..17485228 | 868..218 | 3255 | 100 | Minus |
2L | 23513712 | 2L | 17485298..17485503 | 221..16 | 1030 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:16:00 has no hits.
BS15038.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:15:16 Download gff for
BS15038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5131-PA | 1..852 | 17..868 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:48:08 Download gff for
BS15038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5131-PA | 1..852 | 17..868 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:53:16 Download gff for
BS15038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5131-RA | 78..940 | 7..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:20:30 Download gff for
BS15038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5131-RA | 78..940 | 7..868 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:20:30 Download gff for
BS15038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17484578..17485228 | 218..868 | 100 | -> | Minus |
2L | 17485302..17485513 | 7..217 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:53:16 Download gff for
BS15038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17484578..17485228 | 218..868 | 100 | -> | Minus |
arm_2L | 17485302..17485513 | 7..217 | 98 | | Minus |
BS15038.5prime Sequence
818 bp (816 high quality bases) assembled on 2006-10-23
> BS15038.5prime
GAAGTTATCCTTCGACATGGAGTTCCTGACTAAAGTGTGGGCCAAAGAGG
CAACAGCGCCCGAGGCAATAGAAGCCATCACCGGCGCAGCGCAAGAAAAA
CAAAATGCAAAGACTGAAAAAGCATCTGCCAGTAAGGAGACGAGCACCGA
AGAAACCACCACTGCTCAAAAGGATTGGGGCTACGACCTTTATCCGGAGC
GAAGGGGCGAAACCTTCAAGCCCAAATGGACACGAGTCCTGTTCGGCTTG
GAGGGGCAGGAGAACATTGATCGTTTCAAGTGCGAGGAGAATGTGTACTG
GTGTGTCAAAAATGGTCCGCTGGTCAAACTGATGATGGGAGCACTGAAAA
GTTCCGGTTGTCCCATCGATCTGCGCCGACACATCTCATGCGAGGTGTGC
GACCCCACAGTCACCGGCGGTTACGATCCCAAGCTCAACCAGATCGTGGT
CTGCCAGAATATGGCCAGGAACAAGAGCATGGTCCATGGAGTGCTAACGC
ACGAGATGATTCACATGTTCGACTACTGCAATAACGACATGGACTTCCGC
AACGTGGACCACCTGGCCTGCACAGAGATCAGGGCGGCAAACCTGGCGCA
TTGCTCCTTCTTGAGCGCCATGTTCCAAGGAGATGCCTCGCCATTTAATG
TCAAGGAAGCGCATCAGAACTGCGTCAAGTCCAAAGCCCTAGCTTCCGTG
CTCGCTGTTCGCAATATTAGCAAAGCAGATGCCGTCGCTGCTGTGGAACG
TGTCTTTCCCAAATGCTATGCAGACTTGGAGCCCATTGGCCGGAGAATCC
GTCGCAATTCCACGGACC
BS15038.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5131-PA | 852 | CG5131-RA | 1..802 | 17..818 | 4010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:16:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5131-RA | 1051 | CG5131-RA | 78..879 | 17..818 | 4010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:16:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17484578..17485228 | 17..667 | 3255 | 100 | Plus |
2L | 23513712 | 2L | 17485298..17485452 | 664..818 | 775 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 21:16:48 has no hits.
BS15038.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:15:18 Download gff for
BS15038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5131-PA | 1..802 | 17..818 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:48:09 Download gff for
BS15038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5131-PA | 1..802 | 17..818 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:41:18 Download gff for
BS15038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5131-RA | 78..879 | 17..818 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:45:03 Download gff for
BS15038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5131-RA | 78..879 | 17..818 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:45:03 Download gff for
BS15038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17484578..17485228 | 17..667 | 100 | -> | Plus |
2L | 17485302..17485452 | 668..818 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:41:18 Download gff for
BS15038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17484578..17485228 | 17..667 | 100 | -> | Plus |
arm_2L | 17485302..17485452 | 668..818 | 100 | | Plus |
BS15038.complete Sequence
884 bp assembled on 2006-11-01
GenBank Submission: FJ637859
> BS15038.complete
GAAGTTATCAGTCGACATGGAGTTCCTGACTAAAGTGTGGGCCAAAGAGG
CAACAGCGCCCGAGGCAATAGAAGCCATCACCGGCGCAGCGCAAGAAAAA
CAAAATGCAAAGACTGAAAAAGCATCTGCCAGTAAGGAGACGAGCACCGA
AGAAACCACCACTGCTCAAAAGGATTGGGGCTACGACCTTTATCCGGAGC
GAAGGGGCGAAACCTTCAAGCCCAAATGGACACGAGTCCTGTTCGGCTTG
GAGGGGCAGGAGAACATTGATCGTTTCAAGTGCGAGGAGAATGTGTACTG
GTGTGTCAAAAATGGTCCGCTGGTCAAACTGATGATGGGAGCACTGAAAA
GTTCCGGTTGTCCCATCGATCTGCGCCGACACATCTCATGCGAGGTGTGC
GACCCCACAGTCACCGGCGGTTACGATCCCAAGCTCAACCAGATCGTGGT
CTGCCAGAATATGGCCAGGAACAAGAGCATGGTCCATGGAGTGCTAACGC
ACGAGATGATTCACATGTTCGACTACTGCAATAACGACATGGACTTCCGC
AACGTGGACCACCTGGCCTGCACAGAGATCAGGGCGGCAAACCTGGCGCA
TTGCTCCTTCTTGAGCGCCATGTTCCAAGGAGATGCCTCGCCATTTAATG
TCAAGGAAGCGCATCAGAACTGCGTCAAGTCCAAAGCCCTAGCTTCCGTG
CTCGCTGTTCGCAATATTAGCAAAGCAGATGCCGTCGCTGCTGTGGAACG
TGTCTTTCCCAAATGCTATGCAGACTTGGAGCCCATTGGCCGGAGAATCC
GTCGCAATTCCACGGACCAGCAGAAGGCTTACATGGAGGCACCCATGTAT
GGCTATGATGTATATTAAAAGCTTTCTAGACCAT
BS15038.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:12:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5131-RA | 852 | CG5131-PA | 1..852 | 17..868 | 4260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:12:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5131-RA | 1051 | CG5131-RA | 78..930 | 17..869 | 4265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17484578..17485228 | 17..667 | 3255 | 100 | Plus |
2L | 23513712 | 2L | 17485298..17485503 | 664..869 | 1030 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:12:25 has no hits.
BS15038.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:51 Download gff for
BS15038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5131-RA | 1..852 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:56:13 Download gff for
BS15038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5131-RA | 61..923 | 17..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:54:56 Download gff for
BS15038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5131-RA | 78..927 | 17..866 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:24:51 Download gff for
BS15038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5131-RA | 61..923 | 17..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:13:35 Download gff for
BS15038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5131-RA | 78..927 | 17..866 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:13:35 Download gff for
BS15038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17484578..17485228 | 17..667 | 100 | -> | Plus |
2L | 17485302..17485500 | 668..866 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:54:56 Download gff for
BS15038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17484578..17485228 | 17..667 | 100 | -> | Plus |
arm_2L | 17485302..17485500 | 668..866 | 100 | | Plus |
BS15038.pep Sequence
Translation from 16 to 867
> BS15038.pep
MEFLTKVWAKEATAPEAIEAITGAAQEKQNAKTEKASASKETSTEETTTA
QKDWGYDLYPERRGETFKPKWTRVLFGLEGQENIDRFKCEENVYWCVKNG
PLVKLMMGALKSSGCPIDLRRHISCEVCDPTVTGGYDPKLNQIVVCQNMA
RNKSMVHGVLTHEMIHMFDYCNNDMDFRNVDHLACTEIRAANLAHCSFLS
AMFQGDASPFNVKEAHQNCVKSKALASVLAVRNISKADAVAAVERVFPKC
YADLEPIGRRIRRNSTDQQKAYMEAPMYGYDVY*
BS15038.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5131-PA | 283 | CG5131-PA | 1..283 | 1..283 | 1509 | 100 | Plus |