Clone BS15038 Report

Search the DGRC for BS15038

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:150
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptCG5131-RA
Protein status:BS15038.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15038.3prime Sequence

882 bp (847 high quality bases) assembled on 2006-10-23

> BS15038.3prime
ATGGTCTAGAAAGCTTTTAATATACATCATAGCCATACATGGGTGCCTCC
ATGTAAGCCTTCTGCTGGTCCGTGGAATTGCGACGGATTCTCCGGCCAAT
GGGCTCCAAGTCTGCATAGCATTTGGGAAAGACACGTTCCACAGCAGCGA
CGGCATCTGCTTTGCTAATATTGCGAACAGCGAGCACGGAAGCTAGGGCT
TTGGACTTGACGCAGTTCTGATGCGCTTCCTTGACATTAAATGGCGAGGC
ATCTCCTTGGAACATGGCGCTCAAGAAGGAGCAATGCGCCAGGTTTGCCG
CCCTGATCTCTGTGCAGGCCAGGTGGTCCACGTTGCGGAAGTCCATGTCG
TTATTGCAGTAGTCGAACATGTGAATCATCTCGTGCGTTAGCACTCCATG
GACCATGCTCTTGTTCCTGGCCATATTCTGGCAGACCACGATCTGGTTGA
GCTTGGGATCGTAACCGCCGGTGACTGTGGGGTCGCACACCTCGCATGAG
ATGTGTCGGCGCAGATCGATGGGACAACCGGAACTTTTCAGTGCTCCCAT
CATCAGTTTGACCAGCGGACCATTTTTGACACACCAGTACACATTCTCCT
CGCACTTGAAACGATCAATGTTCTCCTGCCCCTCCAAGCCGAACAGGACT
CGTGTCCATTTGGGCTTGAAGGTTTCGCCCCTTCGCTCCGGATAAAGGTC
GTAGCCCCAATCCTTTTGAGCAGTGGTGGTTTCTTCGGTGCTCGTCTCCT
TACTGGCAGATGCTTTTTCAGTCTTTGCATTTTGTTTTTCTTGCGCTGCG
CCGGTGATGGCTTCTATTGCCTCGGGCGCTGTTGCCTCTTTGGCCCACAC
TTTAGTCAGGAACTCCATGTCGACTGATAACT

BS15038.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:12:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG5131-PA 852 CG5131-RA 1..852 868..17 4260 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:16:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG5131-RA 1051 CG5131-RA 78..930 868..16 4265 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:15:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17484578..17485228 868..218 3255 100 Minus
2L 23513712 2L 17485298..17485503 221..16 1030 100 Minus
Blast to na_te.dros performed on 2015-02-13 06:16:00 has no hits.

BS15038.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:15:16 Download gff for BS15038.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5131-PA 1..852 17..868 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:48:08 Download gff for BS15038.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5131-PA 1..852 17..868 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:53:16 Download gff for BS15038.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5131-RA 78..940 7..868 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:20:30 Download gff for BS15038.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5131-RA 78..940 7..868 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:20:30 Download gff for BS15038.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 17484578..17485228 218..868 100 -> Minus
2L 17485302..17485513 7..217 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:53:16 Download gff for BS15038.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17484578..17485228 218..868 100 -> Minus
arm_2L 17485302..17485513 7..217 98   Minus

BS15038.5prime Sequence

818 bp (816 high quality bases) assembled on 2006-10-23

> BS15038.5prime
GAAGTTATCCTTCGACATGGAGTTCCTGACTAAAGTGTGGGCCAAAGAGG
CAACAGCGCCCGAGGCAATAGAAGCCATCACCGGCGCAGCGCAAGAAAAA
CAAAATGCAAAGACTGAAAAAGCATCTGCCAGTAAGGAGACGAGCACCGA
AGAAACCACCACTGCTCAAAAGGATTGGGGCTACGACCTTTATCCGGAGC
GAAGGGGCGAAACCTTCAAGCCCAAATGGACACGAGTCCTGTTCGGCTTG
GAGGGGCAGGAGAACATTGATCGTTTCAAGTGCGAGGAGAATGTGTACTG
GTGTGTCAAAAATGGTCCGCTGGTCAAACTGATGATGGGAGCACTGAAAA
GTTCCGGTTGTCCCATCGATCTGCGCCGACACATCTCATGCGAGGTGTGC
GACCCCACAGTCACCGGCGGTTACGATCCCAAGCTCAACCAGATCGTGGT
CTGCCAGAATATGGCCAGGAACAAGAGCATGGTCCATGGAGTGCTAACGC
ACGAGATGATTCACATGTTCGACTACTGCAATAACGACATGGACTTCCGC
AACGTGGACCACCTGGCCTGCACAGAGATCAGGGCGGCAAACCTGGCGCA
TTGCTCCTTCTTGAGCGCCATGTTCCAAGGAGATGCCTCGCCATTTAATG
TCAAGGAAGCGCATCAGAACTGCGTCAAGTCCAAAGCCCTAGCTTCCGTG
CTCGCTGTTCGCAATATTAGCAAAGCAGATGCCGTCGCTGCTGTGGAACG
TGTCTTTCCCAAATGCTATGCAGACTTGGAGCCCATTGGCCGGAGAATCC
GTCGCAATTCCACGGACC

BS15038.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG5131-PA 852 CG5131-RA 1..802 17..818 4010 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:16:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG5131-RA 1051 CG5131-RA 78..879 17..818 4010 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:16:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17484578..17485228 17..667 3255 100 Plus
2L 23513712 2L 17485298..17485452 664..818 775 100 Plus
Blast to na_te.dros performed on 2015-02-04 21:16:48 has no hits.

BS15038.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:15:18 Download gff for BS15038.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5131-PA 1..802 17..818 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:48:09 Download gff for BS15038.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5131-PA 1..802 17..818 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:41:18 Download gff for BS15038.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5131-RA 78..879 17..818 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:45:03 Download gff for BS15038.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5131-RA 78..879 17..818 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:45:03 Download gff for BS15038.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 17484578..17485228 17..667 100 -> Plus
2L 17485302..17485452 668..818 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:41:18 Download gff for BS15038.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17484578..17485228 17..667 100 -> Plus
arm_2L 17485302..17485452 668..818 100   Plus

BS15038.complete Sequence

884 bp assembled on 2006-11-01

GenBank Submission: FJ637859

> BS15038.complete
GAAGTTATCAGTCGACATGGAGTTCCTGACTAAAGTGTGGGCCAAAGAGG
CAACAGCGCCCGAGGCAATAGAAGCCATCACCGGCGCAGCGCAAGAAAAA
CAAAATGCAAAGACTGAAAAAGCATCTGCCAGTAAGGAGACGAGCACCGA
AGAAACCACCACTGCTCAAAAGGATTGGGGCTACGACCTTTATCCGGAGC
GAAGGGGCGAAACCTTCAAGCCCAAATGGACACGAGTCCTGTTCGGCTTG
GAGGGGCAGGAGAACATTGATCGTTTCAAGTGCGAGGAGAATGTGTACTG
GTGTGTCAAAAATGGTCCGCTGGTCAAACTGATGATGGGAGCACTGAAAA
GTTCCGGTTGTCCCATCGATCTGCGCCGACACATCTCATGCGAGGTGTGC
GACCCCACAGTCACCGGCGGTTACGATCCCAAGCTCAACCAGATCGTGGT
CTGCCAGAATATGGCCAGGAACAAGAGCATGGTCCATGGAGTGCTAACGC
ACGAGATGATTCACATGTTCGACTACTGCAATAACGACATGGACTTCCGC
AACGTGGACCACCTGGCCTGCACAGAGATCAGGGCGGCAAACCTGGCGCA
TTGCTCCTTCTTGAGCGCCATGTTCCAAGGAGATGCCTCGCCATTTAATG
TCAAGGAAGCGCATCAGAACTGCGTCAAGTCCAAAGCCCTAGCTTCCGTG
CTCGCTGTTCGCAATATTAGCAAAGCAGATGCCGTCGCTGCTGTGGAACG
TGTCTTTCCCAAATGCTATGCAGACTTGGAGCCCATTGGCCGGAGAATCC
GTCGCAATTCCACGGACCAGCAGAAGGCTTACATGGAGGCACCCATGTAT
GGCTATGATGTATATTAAAAGCTTTCTAGACCAT

BS15038.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:12:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG5131-RA 852 CG5131-PA 1..852 17..868 4260 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:12:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG5131-RA 1051 CG5131-RA 78..930 17..869 4265 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17484578..17485228 17..667 3255 100 Plus
2L 23513712 2L 17485298..17485503 664..869 1030 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:12:25 has no hits.

BS15038.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:51 Download gff for BS15038.complete
Subject Subject Range Query Range Percent Splice Strand
CG5131-RA 1..852 17..868 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:56:13 Download gff for BS15038.complete
Subject Subject Range Query Range Percent Splice Strand
CG5131-RA 61..923 17..878 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:54:56 Download gff for BS15038.complete
Subject Subject Range Query Range Percent Splice Strand
CG5131-RA 78..927 17..866 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:24:51 Download gff for BS15038.complete
Subject Subject Range Query Range Percent Splice Strand
CG5131-RA 61..923 17..878 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:13:35 Download gff for BS15038.complete
Subject Subject Range Query Range Percent Splice Strand
CG5131-RA 78..927 17..866 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:13:35 Download gff for BS15038.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17484578..17485228 17..667 100 -> Plus
2L 17485302..17485500 668..866 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:54:56 Download gff for BS15038.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17484578..17485228 17..667 100 -> Plus
arm_2L 17485302..17485500 668..866 100   Plus

BS15038.pep Sequence

Translation from 16 to 867

> BS15038.pep
MEFLTKVWAKEATAPEAIEAITGAAQEKQNAKTEKASASKETSTEETTTA
QKDWGYDLYPERRGETFKPKWTRVLFGLEGQENIDRFKCEENVYWCVKNG
PLVKLMMGALKSSGCPIDLRRHISCEVCDPTVTGGYDPKLNQIVVCQNMA
RNKSMVHGVLTHEMIHMFDYCNNDMDFRNVDHLACTEIRAANLAHCSFLS
AMFQGDASPFNVKEAHQNCVKSKALASVLAVRNISKADAVAAVERVFPKC
YADLEPIGRRIRRNSTDQQKAYMEAPMYGYDVY*

BS15038.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG5131-PA 283 CG5131-PA 1..283 1..283 1509 100 Plus