Clone Sequence Records
BS15039.3prime Sequence
769 bp (682 high quality bases) assembled on 2006-10-23
> BS15039.3prime
ATGGTCTAGAAAGCTTCTAGTAGACGGTTCCCGAGATTCCGGAACCGTAG
TTATAGCCCGATCCGATGGGCGGCACTCCGCCCAAAGCGCCCAAGCCGCC
GCCCACCACGCTGTTGCCATAGTTGCTCGTATAGTAACTGGATGGATAGC
CACCAGCGCCGAATCGGGTGTTGTAGTACGGATACCCAGTGCCGGCTCCA
GCGCCCAGCCTGCTGTTGTAGTATGACAGGGCGTATGGATTCGAGTTGTA
GGAGCCACCATAACCACTAAGTCCCGATCCATAGCCACCAAGAGCGGATC
CATAGCCACCCAAAGCGGATCCATAGCCGCCCAGAGTGGATCCATAGCCT
CCGTATCCGGCCACTGCAGCACCATCTAATCCACCCAGAGCTCGCGAGCT
GTACGGATTGTAGTAGCTGTCCACGCCAACGCCGACGCCACTGCCGTACG
CTCCTCCATAGCCGGCTCCCAGGCCAGAGGCATAGCCGCCGTATCCTGCG
CCATATCCGGCGCCATAGCCGCCGTATCCCGCGCCGTAGCCCGCTCCGTA
GCCACCGTATCCACCAACATAGCGCTTCTCCTGCTTCTTATCCTGCAGCG
GGGCATAGCTGCTGGCGGCGCTCACCTGATCCTCCACGGCCACCGCATCC
GGTGCCGATGCGGATGCCACCTGCTCCAGGTCAGAATCCGCCGCGTCCTG
GGCATAGGCACTCAGCACCAGACTGGTTGCTATCAAGATAAAAAAGCACT
TCATGTCGACTGATAACTT
BS15039.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2157-PA | 738 | CG2157-RA | 1..738 | 754..17 | 3665 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:01:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2157-RA | 965 | CG2157-RA | 95..835 | 756..16 | 3690 | 99.9 | Minus |
CG2157-RB | 1004 | CG2157-RB | 95..841 | 756..16 | 3620 | 99.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:01:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10869737..10870103 | 742..376 | 1820 | 99.7 | Minus |
X | 23542271 | X | 10870181..10870542 | 377..16 | 1810 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:01:17 has no hits.
BS15039.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:15:18 Download gff for
BS15039.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2157-PA | 1..738 | 17..754 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:48:10 Download gff for
BS15039.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2157-PA | 1..738 | 17..754 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:22:17 Download gff for
BS15039.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2157-RA | 91..835 | 16..762 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:27:55 Download gff for
BS15039.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2157-RA | 91..835 | 16..762 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:27:55 Download gff for
BS15039.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10870183..10870542 | 16..375 | 100 | | Minus |
X | 10869737..10870103 | 376..742 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:22:17 Download gff for
BS15039.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10763770..10764136 | 376..742 | 99 | -> | Minus |
arm_X | 10764216..10764575 | 16..375 | 100 | | Minus |
BS15039.5prime Sequence
769 bp (717 high quality bases) assembled on 2006-10-23
> BS15039.5prime
GAAGTTATCCTTCGAGGTGAAGTGCTTTTTTATCCTGATAGCAACCAGTC
TGGTGCTGAGTGCCTATGCCCAGGACGCGGCGGATTCTGACCTGGAGCAG
GTGGCATCCGCATCGGCACCGGATGCGGTGGCCGTGGAGGATCAGGTGAG
CGCCGCCAGCAGCTATGCCCCGCTGCAGGATAAGAAGCAGGAGAAGCGCT
ATGTTGGTGGATACGGTGGCTACGGAGCGGGCTACGGCGCGGGATACGGC
GGCTATGGCGCCGGATATGGCGCAGGATACGGCGGCTATGCCTCTGGCCT
GGGAGCCGGCTATGGAGGAGCGTACGGCAGTGGCGTCGGCGTTGGCGTGG
ACAGCTACTACAATCCGTACAGCTCGCGAGCTCTGGGTGGATTAGATGGT
GCTGCAGTGGCCGGATACGGAGGCTATGGATCCACTCTGGGCGGCTATGG
ATCCGCTTTGGGTGGCTATGGATCCGCTCTTGGTGGCTATGGATCGGGAC
TTAGTGGTTATGGTGGCTCCTACAACTCGAATCCATACGCCCTGTCATAC
TACAACAGCAGGCTGGGCGCTGGAGCCGGCACTGGGTATCCGTACTACAA
CACCCGATTCGGCGCTGGTGGCTATCCATCCAGTTACTATACGAGCAACT
ATGGCAACAGCGTGGTGGGCGGCGGCTTGGGCGCTTTGGGCGGAGTGCCG
CCCATCGGATCGGGCTATAACTACGGTTCCGGAATCTCGGGAACCGTCTA
CTAGAAGCTTTCTAGACCA
BS15039.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2157-PA | 738 | CG2157-RA | 2..738 | 18..754 | 3685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:36:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2157-RA | 965 | CG2157-RA | 98..835 | 18..755 | 3690 | 100 | Plus |
CG2157-RB | 1004 | CG2157-RB | 98..841 | 18..755 | 3620 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:36:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10869737..10870103 | 29..395 | 1835 | 100 | Plus |
X | 23542271 | X | 10870181..10870542 | 394..755 | 1810 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:36:15 has no hits.
BS15039.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:15:19 Download gff for
BS15039.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2157-PA | 2..738 | 18..754 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:48:12 Download gff for
BS15039.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2157-PA | 2..738 | 18..754 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:37:32 Download gff for
BS15039.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2157-RA | 98..835 | 18..755 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:37:57 Download gff for
BS15039.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2157-RA | 98..835 | 18..755 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:37:57 Download gff for
BS15039.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10869733..10870103 | 24..395 | 99 | -> | Plus |
X | 10870183..10870542 | 396..755 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:37:32 Download gff for
BS15039.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10763766..10764136 | 24..395 | 99 | -> | Plus |
arm_X | 10764216..10764575 | 396..755 | 100 | | Plus |
BS15039.complete Sequence
770 bp assembled on 2006-11-01
GenBank Submission: FJ637860
> BS15039.complete
GAAGTTATCAGTCGACATGAAGTGCTTTTTTATCCTGATAGCAACCAGTC
TGGTGCTGAGTGCCTATGCCCAGGACGCGGCGGATTCTGACCTGGAGCAG
GTGGCATCCGCATCGGCACCGGATGCGGTGGCCGTGGAGGATCAGGTGAG
CGCCGCCAGCAGCTATGCCCCGCTGCAGGATAAGAAGCAGGAGAAGCGCT
ATGTTGGTGGATACGGTGGCTACGGAGCGGGCTACGGCGCGGGATACGGC
GGCTATGGCGCCGGATATGGCGCAGGATACGGCGGCTATGCCTCTGGCCT
GGGAGCCGGCTATGGAGGAGCGTACGGCAGTGGCGTCGGCGTTGGCGTGG
ACAGCTACTACAATCCGTACAGCTCGCGAGCTCTGGGTGGATTAGATGGT
GCTGCAGTGGCCGGATACGGAGGCTATGGATCCACTCTGGGCGGCTATGG
ATCCGCTTTGGGTGGCTATGGATCCGCTCTTGGTGGCTATGGATCGGGAC
TTAGTGGTTATGGTGGCTCCTACAACTCGAATCCATACGCCCTGTCATAC
TACAACAGCAGGCTGGGCGCTGGAGCCGGCACTGGGTATCCGTACTACAA
CACCCGATTCGGCGCTGGTGGCTATCCATCCAGTTACTATACGAGCAACT
ATGGCAACAGCGTGGTGGGCGGCGGCTTGGGCGCTTTGGGCGGAGTGCCG
CCCATCGGATCGGGCTATAACTACGGTTCCGGAATCTCGGGAACCGTCTA
CTAGAAGCTTTCTAGACCAT
BS15039.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:48:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2157-RA | 738 | CG2157-PA | 1..738 | 17..754 | 3690 | 100 | Plus |
CG2157-RB | 744 | CG2157-PB | 1..744 | 17..754 | 3595 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:48:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2157-RA | 965 | CG2157-RA | 95..835 | 15..755 | 3705 | 100 | Plus |
CG2157-RB | 1004 | CG2157-RB | 95..841 | 15..755 | 3610 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:48:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10869737..10870103 | 29..395 | 1835 | 100 | Plus |
X | 23542271 | X | 10870181..10870542 | 394..755 | 1810 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:48:43 has no hits.
BS15039.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:41 Download gff for
BS15039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2157-RA | 1..738 | 17..754 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:56:04 Download gff for
BS15039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2157-RA | 69..813 | 9..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:38:40 Download gff for
BS15039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2157-RA | 97..834 | 17..754 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:24:41 Download gff for
BS15039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2157-RA | 69..813 | 9..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:47 Download gff for
BS15039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2157-RA | 97..834 | 17..754 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:47 Download gff for
BS15039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10869737..10870103 | 29..395 | 100 | -> | Plus |
X | 10870183..10870541 | 396..754 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:38:40 Download gff for
BS15039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10763770..10764136 | 29..395 | 100 | -> | Plus |
arm_X | 10764216..10764574 | 396..754 | 100 | | Plus |
BS15039.pep Sequence
Translation from 16 to 753
> BS15039.pep
MKCFFILIATSLVLSAYAQDAADSDLEQVASASAPDAVAVEDQVSAASSY
APLQDKKQEKRYVGGYGGYGAGYGAGYGGYGAGYGAGYGGYASGLGAGYG
GAYGSGVGVGVDSYYNPYSSRALGGLDGAAVAGYGGYGSTLGGYGSALGG
YGSALGGYGSGLSGYGGSYNSNPYALSYYNSRLGAGAGTGYPYYNTRFGA
GGYPSSYYTSNYGNSVVGGGLGALGGVPPIGSGYNYGSGISGTVY*
BS15039.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2157-PA | 245 | CG2157-PA | 1..245 | 1..245 | 1306 | 100 | Plus |
CG2157-PB | 247 | CG2157-PB | 1..247 | 1..245 | 1293 | 99.2 | Plus |
CG17108-PA | 342 | CG17108-PA | 139..320 | 62..242 | 227 | 35.4 | Plus |
Cpr47Ef-PD | 601 | CG13214-PD | 250..414 | 64..242 | 219 | 38 | Plus |
Cpr47Ef-PC | 612 | CG13214-PC | 250..414 | 64..242 | 219 | 38 | Plus |
Cpr47Ef-PD | 601 | CG13214-PD | 306..478 | 64..242 | 211 | 35.7 | Plus |
Cpr47Ef-PD | 601 | CG13214-PD | 262..424 | 65..242 | 206 | 38.7 | Plus |
CG17108-PA | 342 | CG17108-PA | 17..171 | 64..242 | 205 | 36.3 | Plus |
CG17108-PA | 342 | CG17108-PA | 46..195 | 64..243 | 198 | 37.2 | Plus |
CG17108-PA | 342 | CG17108-PA | 68..236 | 65..242 | 196 | 34.8 | Plus |
CG17108-PA | 342 | CG17108-PA | 79..266 | 65..241 | 190 | 32.8 | Plus |
Cpr47Ef-PD | 601 | CG13214-PD | 342..532 | 64..242 | 190 | 34.5 | Plus |
CG17108-PA | 342 | CG17108-PA | 228..340 | 64..191 | 178 | 38.6 | Plus |
Cpr47Ef-PD | 601 | CG13214-PD | 235..356 | 70..239 | 177 | 39.5 | Plus |
Cpr47Ef-PD | 601 | CG13214-PD | 429..601 | 64..236 | 176 | 34.6 | Plus |
CG17108-PA | 342 | CG17108-PA | 233..341 | 65..170 | 151 | 38.8 | Plus |