Clone BS15039 Report

Search the DGRC for BS15039

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:150
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptCG2157-RA
Protein status:BS15039.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15039.3prime Sequence

769 bp (682 high quality bases) assembled on 2006-10-23

> BS15039.3prime
ATGGTCTAGAAAGCTTCTAGTAGACGGTTCCCGAGATTCCGGAACCGTAG
TTATAGCCCGATCCGATGGGCGGCACTCCGCCCAAAGCGCCCAAGCCGCC
GCCCACCACGCTGTTGCCATAGTTGCTCGTATAGTAACTGGATGGATAGC
CACCAGCGCCGAATCGGGTGTTGTAGTACGGATACCCAGTGCCGGCTCCA
GCGCCCAGCCTGCTGTTGTAGTATGACAGGGCGTATGGATTCGAGTTGTA
GGAGCCACCATAACCACTAAGTCCCGATCCATAGCCACCAAGAGCGGATC
CATAGCCACCCAAAGCGGATCCATAGCCGCCCAGAGTGGATCCATAGCCT
CCGTATCCGGCCACTGCAGCACCATCTAATCCACCCAGAGCTCGCGAGCT
GTACGGATTGTAGTAGCTGTCCACGCCAACGCCGACGCCACTGCCGTACG
CTCCTCCATAGCCGGCTCCCAGGCCAGAGGCATAGCCGCCGTATCCTGCG
CCATATCCGGCGCCATAGCCGCCGTATCCCGCGCCGTAGCCCGCTCCGTA
GCCACCGTATCCACCAACATAGCGCTTCTCCTGCTTCTTATCCTGCAGCG
GGGCATAGCTGCTGGCGGCGCTCACCTGATCCTCCACGGCCACCGCATCC
GGTGCCGATGCGGATGCCACCTGCTCCAGGTCAGAATCCGCCGCGTCCTG
GGCATAGGCACTCAGCACCAGACTGGTTGCTATCAAGATAAAAAAGCACT
TCATGTCGACTGATAACTT

BS15039.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG2157-PA 738 CG2157-RA 1..738 754..17 3665 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:01:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG2157-RA 965 CG2157-RA 95..835 756..16 3690 99.9 Minus
CG2157-RB 1004 CG2157-RB 95..841 756..16 3620 99.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:01:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10869737..10870103 742..376 1820 99.7 Minus
X 23542271 X 10870181..10870542 377..16 1810 100 Minus
Blast to na_te.dros performed on 2015-02-13 00:01:17 has no hits.

BS15039.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:15:18 Download gff for BS15039.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2157-PA 1..738 17..754 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:48:10 Download gff for BS15039.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2157-PA 1..738 17..754 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:22:17 Download gff for BS15039.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2157-RA 91..835 16..762 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:27:55 Download gff for BS15039.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2157-RA 91..835 16..762 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:27:55 Download gff for BS15039.3prime
Subject Subject Range Query Range Percent Splice Strand
X 10870183..10870542 16..375 100   Minus
X 10869737..10870103 376..742 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:22:17 Download gff for BS15039.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10763770..10764136 376..742 99 -> Minus
arm_X 10764216..10764575 16..375 100   Minus

BS15039.5prime Sequence

769 bp (717 high quality bases) assembled on 2006-10-23

> BS15039.5prime
GAAGTTATCCTTCGAGGTGAAGTGCTTTTTTATCCTGATAGCAACCAGTC
TGGTGCTGAGTGCCTATGCCCAGGACGCGGCGGATTCTGACCTGGAGCAG
GTGGCATCCGCATCGGCACCGGATGCGGTGGCCGTGGAGGATCAGGTGAG
CGCCGCCAGCAGCTATGCCCCGCTGCAGGATAAGAAGCAGGAGAAGCGCT
ATGTTGGTGGATACGGTGGCTACGGAGCGGGCTACGGCGCGGGATACGGC
GGCTATGGCGCCGGATATGGCGCAGGATACGGCGGCTATGCCTCTGGCCT
GGGAGCCGGCTATGGAGGAGCGTACGGCAGTGGCGTCGGCGTTGGCGTGG
ACAGCTACTACAATCCGTACAGCTCGCGAGCTCTGGGTGGATTAGATGGT
GCTGCAGTGGCCGGATACGGAGGCTATGGATCCACTCTGGGCGGCTATGG
ATCCGCTTTGGGTGGCTATGGATCCGCTCTTGGTGGCTATGGATCGGGAC
TTAGTGGTTATGGTGGCTCCTACAACTCGAATCCATACGCCCTGTCATAC
TACAACAGCAGGCTGGGCGCTGGAGCCGGCACTGGGTATCCGTACTACAA
CACCCGATTCGGCGCTGGTGGCTATCCATCCAGTTACTATACGAGCAACT
ATGGCAACAGCGTGGTGGGCGGCGGCTTGGGCGCTTTGGGCGGAGTGCCG
CCCATCGGATCGGGCTATAACTACGGTTCCGGAATCTCGGGAACCGTCTA
CTAGAAGCTTTCTAGACCA

BS15039.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG2157-PA 738 CG2157-RA 2..738 18..754 3685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:36:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG2157-RA 965 CG2157-RA 98..835 18..755 3690 100 Plus
CG2157-RB 1004 CG2157-RB 98..841 18..755 3620 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:36:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10869737..10870103 29..395 1835 100 Plus
X 23542271 X 10870181..10870542 394..755 1810 100 Plus
Blast to na_te.dros performed on 2015-02-11 04:36:15 has no hits.

BS15039.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:15:19 Download gff for BS15039.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2157-PA 2..738 18..754 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:48:12 Download gff for BS15039.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2157-PA 2..738 18..754 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:37:32 Download gff for BS15039.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2157-RA 98..835 18..755 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:37:57 Download gff for BS15039.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2157-RA 98..835 18..755 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:37:57 Download gff for BS15039.5prime
Subject Subject Range Query Range Percent Splice Strand
X 10869733..10870103 24..395 99 -> Plus
X 10870183..10870542 396..755 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:37:32 Download gff for BS15039.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10763766..10764136 24..395 99 -> Plus
arm_X 10764216..10764575 396..755 100   Plus

BS15039.complete Sequence

770 bp assembled on 2006-11-01

GenBank Submission: FJ637860

> BS15039.complete
GAAGTTATCAGTCGACATGAAGTGCTTTTTTATCCTGATAGCAACCAGTC
TGGTGCTGAGTGCCTATGCCCAGGACGCGGCGGATTCTGACCTGGAGCAG
GTGGCATCCGCATCGGCACCGGATGCGGTGGCCGTGGAGGATCAGGTGAG
CGCCGCCAGCAGCTATGCCCCGCTGCAGGATAAGAAGCAGGAGAAGCGCT
ATGTTGGTGGATACGGTGGCTACGGAGCGGGCTACGGCGCGGGATACGGC
GGCTATGGCGCCGGATATGGCGCAGGATACGGCGGCTATGCCTCTGGCCT
GGGAGCCGGCTATGGAGGAGCGTACGGCAGTGGCGTCGGCGTTGGCGTGG
ACAGCTACTACAATCCGTACAGCTCGCGAGCTCTGGGTGGATTAGATGGT
GCTGCAGTGGCCGGATACGGAGGCTATGGATCCACTCTGGGCGGCTATGG
ATCCGCTTTGGGTGGCTATGGATCCGCTCTTGGTGGCTATGGATCGGGAC
TTAGTGGTTATGGTGGCTCCTACAACTCGAATCCATACGCCCTGTCATAC
TACAACAGCAGGCTGGGCGCTGGAGCCGGCACTGGGTATCCGTACTACAA
CACCCGATTCGGCGCTGGTGGCTATCCATCCAGTTACTATACGAGCAACT
ATGGCAACAGCGTGGTGGGCGGCGGCTTGGGCGCTTTGGGCGGAGTGCCG
CCCATCGGATCGGGCTATAACTACGGTTCCGGAATCTCGGGAACCGTCTA
CTAGAAGCTTTCTAGACCAT

BS15039.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:48:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG2157-RA 738 CG2157-PA 1..738 17..754 3690 100 Plus
CG2157-RB 744 CG2157-PB 1..744 17..754 3595 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:48:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG2157-RA 965 CG2157-RA 95..835 15..755 3705 100 Plus
CG2157-RB 1004 CG2157-RB 95..841 15..755 3610 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:48:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10869737..10870103 29..395 1835 100 Plus
X 23542271 X 10870181..10870542 394..755 1810 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:48:43 has no hits.

BS15039.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:41 Download gff for BS15039.complete
Subject Subject Range Query Range Percent Splice Strand
CG2157-RA 1..738 17..754 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:56:04 Download gff for BS15039.complete
Subject Subject Range Query Range Percent Splice Strand
CG2157-RA 69..813 9..755 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:38:40 Download gff for BS15039.complete
Subject Subject Range Query Range Percent Splice Strand
CG2157-RA 97..834 17..754 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:24:41 Download gff for BS15039.complete
Subject Subject Range Query Range Percent Splice Strand
CG2157-RA 69..813 9..755 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:47 Download gff for BS15039.complete
Subject Subject Range Query Range Percent Splice Strand
CG2157-RA 97..834 17..754 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:47 Download gff for BS15039.complete
Subject Subject Range Query Range Percent Splice Strand
X 10869737..10870103 29..395 100 -> Plus
X 10870183..10870541 396..754 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:38:40 Download gff for BS15039.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10763770..10764136 29..395 100 -> Plus
arm_X 10764216..10764574 396..754 100   Plus

BS15039.pep Sequence

Translation from 16 to 753

> BS15039.pep
MKCFFILIATSLVLSAYAQDAADSDLEQVASASAPDAVAVEDQVSAASSY
APLQDKKQEKRYVGGYGGYGAGYGAGYGGYGAGYGAGYGGYASGLGAGYG
GAYGSGVGVGVDSYYNPYSSRALGGLDGAAVAGYGGYGSTLGGYGSALGG
YGSALGGYGSGLSGYGGSYNSNPYALSYYNSRLGAGAGTGYPYYNTRFGA
GGYPSSYYTSNYGNSVVGGGLGALGGVPPIGSGYNYGSGISGTVY*

BS15039.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG2157-PA 245 CG2157-PA 1..245 1..245 1306 100 Plus
CG2157-PB 247 CG2157-PB 1..247 1..245 1293 99.2 Plus
CG17108-PA 342 CG17108-PA 139..320 62..242 227 35.4 Plus
Cpr47Ef-PD 601 CG13214-PD 250..414 64..242 219 38 Plus
Cpr47Ef-PC 612 CG13214-PC 250..414 64..242 219 38 Plus
Cpr47Ef-PD 601 CG13214-PD 306..478 64..242 211 35.7 Plus
Cpr47Ef-PD 601 CG13214-PD 262..424 65..242 206 38.7 Plus
CG17108-PA 342 CG17108-PA 17..171 64..242 205 36.3 Plus
CG17108-PA 342 CG17108-PA 46..195 64..243 198 37.2 Plus
CG17108-PA 342 CG17108-PA 68..236 65..242 196 34.8 Plus
CG17108-PA 342 CG17108-PA 79..266 65..241 190 32.8 Plus
Cpr47Ef-PD 601 CG13214-PD 342..532 64..242 190 34.5 Plus
CG17108-PA 342 CG17108-PA 228..340 64..191 178 38.6 Plus
Cpr47Ef-PD 601 CG13214-PD 235..356 70..239 177 39.5 Plus
Cpr47Ef-PD 601 CG13214-PD 429..601 64..236 176 34.6 Plus
CG17108-PA 342 CG17108-PA 233..341 65..170 151 38.8 Plus