Clone BS15041 Report

Search the DGRC for BS15041

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:150
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptSocs44A-RA
Protein status:BS15041.pep: full length peptide match
Sequenced Size:1061

Clone Sequence Records

BS15041.complete Sequence

1061 bp assembled on 2010-02-09

GenBank Submission: KX801641

> BS15041.complete
GAAGTTATCAGTCGACATGAGCCACGGCGACCAGAGTCAAAACCAGAGCA
GCCAGCGGAGCCAGGCGCTCACTGGCGGTGGTGACTCCCCGAGGGACAGG
GAGAAGGAAAAGAAGGGCTGGTTCCACTCGCTGACCAGGCGCAAGAAGTC
CGACTCGGCGCTGGCCGTGACTGCATCCGCCGCCGTCTCCACCAGTGGAT
CGCAGAACAACAACAACGAAGTGTGCGTCCTTGAGGCAGCGGACTCTTCC
ATGGCCAGCTGCAGCAATGGGGGCACGGGCACAGGAACTCTGCGCAGAAG
GCGGGACAAGGACAAGCGAAACGTGTTTGCCAGACTACGAAGGAAGGTGG
GCCAAGGGCTCAGCTCCCTGCGAAACTGGCACTCCATGGGCGACTGCGAC
GACGGCGGAACTACTGATGCCACCTACGAGTTCCTTACGCCGGCCATCTG
TCCGGAACCCACGCTACCATTCACACACGACTACTTGCGCTTTATCCGGA
AGAAATGGCTTGAGCGCGAGGACGCCCACTCGCCCAACCAGATCATGTAC
AAGGCCTGCTCCGAGATGCTCAACCAAGTGTGGTACTGGGGTGAGATCTC
CAGGCGCGATTCGCAGCGGCAGTTGAGTGACAAGCCGACTGGGTCGTTTC
TAGTCCGCGACTCGGAAACCAGCGGATCCCAATTCACGCTCAGCTTTCGG
ATTGTGAACGTAACCCTGCATTATCGACTGGAATATCGCGACAATTTTTG
GCACTTCGAGGAACTTAAGTACGAGTCCATTGTCGAGATGATCGAAGATA
TCTTGCACCGCTGCACCAACGACAACTTTGTGTGCTTTGTGAAGGTTCCC
AACGAGATGCAGCCACCGTTTCCAGTGATCCTCAAGTACCCGTTGAGCCG
GTACTCCAACATGCCCAAGCTGCAGGACTTATGCCGCCGTGTTCTGCAGC
GCCAGATGTCTCGCGAACAGCTGGCCCAGTTGCCAGTGCCGGCGCAGATG
CTGGAGTACTTGTCGGTGGAGCGGGAGCTGGTCTTCCAGAGTTAGAAGCT
TTCTAGACCAT

BS15041.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:07:14
Subject Length Description Subject Range Query Range Score Percent Strand
Socs44A-RA 1029 CG2160-PA 1..1029 17..1045 5145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:07:16
Subject Length Description Subject Range Query Range Score Percent Strand
Socs44A-RA 1840 CG2160-RA 131..1159 17..1045 5145 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:07:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8127705..8128261 17..573 2785 100 Plus
2R 25286936 2R 8128324..8128795 574..1045 2360 100 Plus
Blast to na_te.dros performed 2014-11-27 13:07:13
Subject Length Description Subject Range Query Range Score Percent Strand
Doc 4725 Doc DMW1DOC 4725bp Derived from X17551 (g8821) (Rel. 29, Last updated, Version 2). 1689..1752 1043..980 113 64.1 Minus

BS15041.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:11:01 Download gff for BS15041.complete
Subject Subject Range Query Range Percent Splice Strand
Socs44A-RA 75..1103 17..1045 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:27:02 Download gff for BS15041.complete
Subject Subject Range Query Range Percent Splice Strand
Socs44A-RA 131..1159 17..1045 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:08:08 Download gff for BS15041.complete
Subject Subject Range Query Range Percent Splice Strand
Socs44A-RA 75..1103 17..1045 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:20 Download gff for BS15041.complete
Subject Subject Range Query Range Percent Splice Strand
Socs44A-RA 131..1159 17..1045 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:11:20 Download gff for BS15041.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8127705..8128261 17..573 100 -> Plus
2R 8128324..8128795 574..1045 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:27:02 Download gff for BS15041.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4015210..4015766 17..573 100 -> Plus
arm_2R 4015829..4016300 574..1045 100   Plus

BS15041.3prime Sequence

842 bp (727 high quality bases) assembled on 2006-10-23

> BS15041.3prime
ATGGTCTAGAAAGCTTCTAACTCTGGAAGACCAGCTCCCGCTCCACCGAC
AAGTACTCCAGCATCTGCGCCGGCACTGGCAACTGGGCCAGCTGTCCGCG
AGACATCTGGCGCTGCAGAACACGGCGGCATAAGTCCTGCAGCTTGGGCA
TGTTGGAGTACCGGCTCAACGGGTACTTGAGGATCACTGGAAACGGTGGC
TGCATCTCGTTGGGAACCTTCACAAAGCACACAAAGTTGTCGTTGGTGCA
GCGGTGCAAGATATCTTCGATCATCTCGACAATGGACTCGTACTTAAGTT
CCTCGAAGTGCCAAAAATTGTCGCGATATTCCAGTCGATAATGCAGGGTT
ACGTTCACAATCCGAAAGCTGAGCGTGAATTGGGATCCGCTGGTTTCCGA
GTCGCGGACTAGAAACGACCCAGTCGGCTTGTCACTCAACTGCCGCTGCG
AATCGCGCCTGGAGATCTCACCCCAGTACCACACTTGGTTGAGCATCTCG
GAGCAGGCCTTGTACATGATCTGGTTGGGCGAGTGGGCGTCCTCGCGCTC
AAGCCATTTCTTCCGGATAAAGCGCAAGTAGTCGTGTGTGAATGGTAGCG
TGGGTTCCGGACAGATGGCCGGCGTAAGGAACTCGTAGGTGGCATCAGTA
GTTCCGCCGTCGTCGCAGTCGCCCATGGAGTGCCAGTTTCGCAGGGAGCT
GAGCCCTTGGCCCACCTTCCTTCGTAGTCTGGCAAACACGTTTCGCTTGT
CCTTGTCCCGCCTTCTGCGCAGAGTTCCTGTGCCCGTGCCCCCATTGCTG
CAGCTGGCCATGGAAGAGTCCGCTGGCTCAAGGACGCACACT

BS15041.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG2160-PA 1029 Socs44A-RA 204..1029 842..17 4080 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:27:41
Subject Length Description Subject Range Query Range Score Percent Strand
Socs44A-RA 1840 CG2160-RA 334..1159 842..17 4100 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:27:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8128324..8128795 488..17 2345 99.8 Minus
2R 25286936 2R 8127908..8128261 842..489 1755 99.7 Minus
Blast to na_te.dros performed 2015-02-13 15:27:39
Subject Length Description Subject Range Query Range Score Percent Strand
Doc 4725 Doc DMW1DOC 4725bp Derived from X17551 (g8821) (Rel. 29, Last updated, Version 2). 1689..1752 19..82 113 64.1 Plus

BS15041.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:15:23 Download gff for BS15041.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2160-PA 204..1029 17..842 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:48:15 Download gff for BS15041.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2160-PA 204..1029 17..842 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:54:22 Download gff for BS15041.3prime
Subject Subject Range Query Range Percent Splice Strand
Socs44A-RA 334..1161 13..842 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:50:52 Download gff for BS15041.3prime
Subject Subject Range Query Range Percent Splice Strand
Socs44A-RA 334..1161 13..842 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:50:52 Download gff for BS15041.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8127908..8128261 489..842 99 -> Minus
2R 8128324..8128797 13..488 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:54:22 Download gff for BS15041.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4015413..4015766 489..842 99 -> Minus
arm_2R 4015829..4016302 13..488 99   Minus

BS15041.5prime Sequence

600 bp (591 high quality bases) assembled on 2006-10-23

> BS15041.5prime
GAAGTTATCAGTCGACATGAGCCACGGCGACCAGAGTCAAAACCAGAGCA
GCCAGCGGAGCCAGGCGCTCACTGGCGGTGGTGACTCCCCGAGGGACAGG
GAGAAGGAAAAGAAGGGCTGGTTCCACTCGCTGACCAGGCGCAAGAAGTC
CGACTCGGCGCTGGCCGTGACTGCATCCGCCGCCGTCTCCACCAGTGGAT
CGCAGAACAACAACAACGAAGTGTGCGTCCTTGAGGCAGCGGACTCTTCC
ATGGCCAGCTGCAGCAATGGGGGCACGGGCACAGGAACTCTGCGCAGAAG
GCGGGACAAGGACAAGCGAAACGTGTTTGCCAGACTACGAAGGAAGGTGG
GCCAAGGGCTCAGCTCCCTGCGAAACTGGCACTCCATGGGCGACTGCGAC
GACGGCGGAACTACTGATGCCACCTACGAGTTCCTTACGCCGGCCATCTG
TCCGGAACCCACGCTACCATTCACACACGACTACTTGCGCTTTATCCGGA
AGAAATGGCTTGAGCGCGAGGACGCCCACTCGCCCAACCAGATCATGTAC
AAGGCCTGCTCCGAGATGCTCAACCAAGTGTGGTACTGGGGTGAGATCTC

BS15041.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG2160-PA 1029 Socs44A-RA 1..584 17..600 2920 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:59:47
Subject Length Description Subject Range Query Range Score Percent Strand
Socs44A-RA 1840 CG2160-RA 131..714 17..600 2920 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:59:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8127705..8128261 17..573 2785 100 Plus
Blast to na_te.dros performed on 2015-02-11 22:59:43 has no hits.

BS15041.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:15:24 Download gff for BS15041.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2160-PA 1..584 17..600 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:48:17 Download gff for BS15041.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2160-PA 1..584 17..600 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:34:56 Download gff for BS15041.5prime
Subject Subject Range Query Range Percent Splice Strand
Socs44A-RA 122..714 9..600 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:30:22 Download gff for BS15041.5prime
Subject Subject Range Query Range Percent Splice Strand
Socs44A-RA 122..714 9..600 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:30:22 Download gff for BS15041.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8127696..8128261 9..573 99 -> Plus
2R 8128324..8128350 574..600 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:34:56 Download gff for BS15041.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4015201..4015766 9..573 99 -> Plus
arm_2R 4015829..4015855 574..600 100   Plus

BS15041.pep Sequence

Translation from 16 to 1044

> BS15041.pep
MSHGDQSQNQSSQRSQALTGGGDSPRDREKEKKGWFHSLTRRKKSDSALA
VTASAAVSTSGSQNNNNEVCVLEAADSSMASCSNGGTGTGTLRRRRDKDK
RNVFARLRRKVGQGLSSLRNWHSMGDCDDGGTTDATYEFLTPAICPEPTL
PFTHDYLRFIRKKWLEREDAHSPNQIMYKACSEMLNQVWYWGEISRRDSQ
RQLSDKPTGSFLVRDSETSGSQFTLSFRIVNVTLHYRLEYRDNFWHFEEL
KYESIVEMIEDILHRCTNDNFVCFVKVPNEMQPPFPVILKYPLSRYSNMP
KLQDLCRRVLQRQMSREQLAQLPVPAQMLEYLSVERELVFQS*

BS15041.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:10:29
Subject Length Description Subject Range Query Range Score Percent Strand
Socs44A-PA 342 CG2160-PA 1..342 1..342 1810 100 Plus
Socs16D-PB 1021 CG8146-PB 783..997 129..333 227 30.1 Plus
Socs16D-PA 1016 CG8146-PA 845..992 189..333 225 34.2 Plus