Clone Sequence Records
BS15041.complete Sequence
1061 bp assembled on 2010-02-09
GenBank Submission: KX801641
> BS15041.complete
GAAGTTATCAGTCGACATGAGCCACGGCGACCAGAGTCAAAACCAGAGCA
GCCAGCGGAGCCAGGCGCTCACTGGCGGTGGTGACTCCCCGAGGGACAGG
GAGAAGGAAAAGAAGGGCTGGTTCCACTCGCTGACCAGGCGCAAGAAGTC
CGACTCGGCGCTGGCCGTGACTGCATCCGCCGCCGTCTCCACCAGTGGAT
CGCAGAACAACAACAACGAAGTGTGCGTCCTTGAGGCAGCGGACTCTTCC
ATGGCCAGCTGCAGCAATGGGGGCACGGGCACAGGAACTCTGCGCAGAAG
GCGGGACAAGGACAAGCGAAACGTGTTTGCCAGACTACGAAGGAAGGTGG
GCCAAGGGCTCAGCTCCCTGCGAAACTGGCACTCCATGGGCGACTGCGAC
GACGGCGGAACTACTGATGCCACCTACGAGTTCCTTACGCCGGCCATCTG
TCCGGAACCCACGCTACCATTCACACACGACTACTTGCGCTTTATCCGGA
AGAAATGGCTTGAGCGCGAGGACGCCCACTCGCCCAACCAGATCATGTAC
AAGGCCTGCTCCGAGATGCTCAACCAAGTGTGGTACTGGGGTGAGATCTC
CAGGCGCGATTCGCAGCGGCAGTTGAGTGACAAGCCGACTGGGTCGTTTC
TAGTCCGCGACTCGGAAACCAGCGGATCCCAATTCACGCTCAGCTTTCGG
ATTGTGAACGTAACCCTGCATTATCGACTGGAATATCGCGACAATTTTTG
GCACTTCGAGGAACTTAAGTACGAGTCCATTGTCGAGATGATCGAAGATA
TCTTGCACCGCTGCACCAACGACAACTTTGTGTGCTTTGTGAAGGTTCCC
AACGAGATGCAGCCACCGTTTCCAGTGATCCTCAAGTACCCGTTGAGCCG
GTACTCCAACATGCCCAAGCTGCAGGACTTATGCCGCCGTGTTCTGCAGC
GCCAGATGTCTCGCGAACAGCTGGCCCAGTTGCCAGTGCCGGCGCAGATG
CTGGAGTACTTGTCGGTGGAGCGGGAGCTGGTCTTCCAGAGTTAGAAGCT
TTCTAGACCAT
BS15041.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:07:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Socs44A-RA | 1029 | CG2160-PA | 1..1029 | 17..1045 | 5145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:07:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Socs44A-RA | 1840 | CG2160-RA | 131..1159 | 17..1045 | 5145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:07:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8127705..8128261 | 17..573 | 2785 | 100 | Plus |
2R | 25286936 | 2R | 8128324..8128795 | 574..1045 | 2360 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 13:07:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc | 4725 | Doc DMW1DOC 4725bp Derived from X17551 (g8821) (Rel. 29, Last updated, Version 2). | 1689..1752 | 1043..980 | 113 | 64.1 | Minus |
BS15041.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:11:01 Download gff for
BS15041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Socs44A-RA | 75..1103 | 17..1045 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:27:02 Download gff for
BS15041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Socs44A-RA | 131..1159 | 17..1045 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:08:08 Download gff for
BS15041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Socs44A-RA | 75..1103 | 17..1045 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:20 Download gff for
BS15041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Socs44A-RA | 131..1159 | 17..1045 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:11:20 Download gff for
BS15041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8127705..8128261 | 17..573 | 100 | -> | Plus |
2R | 8128324..8128795 | 574..1045 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:27:02 Download gff for
BS15041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4015210..4015766 | 17..573 | 100 | -> | Plus |
arm_2R | 4015829..4016300 | 574..1045 | 100 | | Plus |
BS15041.3prime Sequence
842 bp (727 high quality bases) assembled on 2006-10-23
> BS15041.3prime
ATGGTCTAGAAAGCTTCTAACTCTGGAAGACCAGCTCCCGCTCCACCGAC
AAGTACTCCAGCATCTGCGCCGGCACTGGCAACTGGGCCAGCTGTCCGCG
AGACATCTGGCGCTGCAGAACACGGCGGCATAAGTCCTGCAGCTTGGGCA
TGTTGGAGTACCGGCTCAACGGGTACTTGAGGATCACTGGAAACGGTGGC
TGCATCTCGTTGGGAACCTTCACAAAGCACACAAAGTTGTCGTTGGTGCA
GCGGTGCAAGATATCTTCGATCATCTCGACAATGGACTCGTACTTAAGTT
CCTCGAAGTGCCAAAAATTGTCGCGATATTCCAGTCGATAATGCAGGGTT
ACGTTCACAATCCGAAAGCTGAGCGTGAATTGGGATCCGCTGGTTTCCGA
GTCGCGGACTAGAAACGACCCAGTCGGCTTGTCACTCAACTGCCGCTGCG
AATCGCGCCTGGAGATCTCACCCCAGTACCACACTTGGTTGAGCATCTCG
GAGCAGGCCTTGTACATGATCTGGTTGGGCGAGTGGGCGTCCTCGCGCTC
AAGCCATTTCTTCCGGATAAAGCGCAAGTAGTCGTGTGTGAATGGTAGCG
TGGGTTCCGGACAGATGGCCGGCGTAAGGAACTCGTAGGTGGCATCAGTA
GTTCCGCCGTCGTCGCAGTCGCCCATGGAGTGCCAGTTTCGCAGGGAGCT
GAGCCCTTGGCCCACCTTCCTTCGTAGTCTGGCAAACACGTTTCGCTTGT
CCTTGTCCCGCCTTCTGCGCAGAGTTCCTGTGCCCGTGCCCCCATTGCTG
CAGCTGGCCATGGAAGAGTCCGCTGGCTCAAGGACGCACACT
BS15041.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2160-PA | 1029 | Socs44A-RA | 204..1029 | 842..17 | 4080 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:27:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Socs44A-RA | 1840 | CG2160-RA | 334..1159 | 842..17 | 4100 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:27:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8128324..8128795 | 488..17 | 2345 | 99.8 | Minus |
2R | 25286936 | 2R | 8127908..8128261 | 842..489 | 1755 | 99.7 | Minus |
Blast to na_te.dros performed 2015-02-13 15:27:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc | 4725 | Doc DMW1DOC 4725bp Derived from X17551 (g8821) (Rel. 29, Last updated, Version 2). | 1689..1752 | 19..82 | 113 | 64.1 | Plus |
BS15041.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:15:23 Download gff for
BS15041.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2160-PA | 204..1029 | 17..842 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:48:15 Download gff for
BS15041.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2160-PA | 204..1029 | 17..842 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:54:22 Download gff for
BS15041.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Socs44A-RA | 334..1161 | 13..842 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:50:52 Download gff for
BS15041.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Socs44A-RA | 334..1161 | 13..842 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:50:52 Download gff for
BS15041.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8127908..8128261 | 489..842 | 99 | -> | Minus |
2R | 8128324..8128797 | 13..488 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:54:22 Download gff for
BS15041.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4015413..4015766 | 489..842 | 99 | -> | Minus |
arm_2R | 4015829..4016302 | 13..488 | 99 | | Minus |
BS15041.5prime Sequence
600 bp (591 high quality bases) assembled on 2006-10-23
> BS15041.5prime
GAAGTTATCAGTCGACATGAGCCACGGCGACCAGAGTCAAAACCAGAGCA
GCCAGCGGAGCCAGGCGCTCACTGGCGGTGGTGACTCCCCGAGGGACAGG
GAGAAGGAAAAGAAGGGCTGGTTCCACTCGCTGACCAGGCGCAAGAAGTC
CGACTCGGCGCTGGCCGTGACTGCATCCGCCGCCGTCTCCACCAGTGGAT
CGCAGAACAACAACAACGAAGTGTGCGTCCTTGAGGCAGCGGACTCTTCC
ATGGCCAGCTGCAGCAATGGGGGCACGGGCACAGGAACTCTGCGCAGAAG
GCGGGACAAGGACAAGCGAAACGTGTTTGCCAGACTACGAAGGAAGGTGG
GCCAAGGGCTCAGCTCCCTGCGAAACTGGCACTCCATGGGCGACTGCGAC
GACGGCGGAACTACTGATGCCACCTACGAGTTCCTTACGCCGGCCATCTG
TCCGGAACCCACGCTACCATTCACACACGACTACTTGCGCTTTATCCGGA
AGAAATGGCTTGAGCGCGAGGACGCCCACTCGCCCAACCAGATCATGTAC
AAGGCCTGCTCCGAGATGCTCAACCAAGTGTGGTACTGGGGTGAGATCTC
BS15041.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2160-PA | 1029 | Socs44A-RA | 1..584 | 17..600 | 2920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:59:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Socs44A-RA | 1840 | CG2160-RA | 131..714 | 17..600 | 2920 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:59:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8127705..8128261 | 17..573 | 2785 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:59:43 has no hits.
BS15041.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:15:24 Download gff for
BS15041.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2160-PA | 1..584 | 17..600 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:48:17 Download gff for
BS15041.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2160-PA | 1..584 | 17..600 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:34:56 Download gff for
BS15041.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Socs44A-RA | 122..714 | 9..600 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:30:22 Download gff for
BS15041.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Socs44A-RA | 122..714 | 9..600 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:30:22 Download gff for
BS15041.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8127696..8128261 | 9..573 | 99 | -> | Plus |
2R | 8128324..8128350 | 574..600 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:34:56 Download gff for
BS15041.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4015201..4015766 | 9..573 | 99 | -> | Plus |
arm_2R | 4015829..4015855 | 574..600 | 100 | | Plus |
BS15041.pep Sequence
Translation from 16 to 1044
> BS15041.pep
MSHGDQSQNQSSQRSQALTGGGDSPRDREKEKKGWFHSLTRRKKSDSALA
VTASAAVSTSGSQNNNNEVCVLEAADSSMASCSNGGTGTGTLRRRRDKDK
RNVFARLRRKVGQGLSSLRNWHSMGDCDDGGTTDATYEFLTPAICPEPTL
PFTHDYLRFIRKKWLEREDAHSPNQIMYKACSEMLNQVWYWGEISRRDSQ
RQLSDKPTGSFLVRDSETSGSQFTLSFRIVNVTLHYRLEYRDNFWHFEEL
KYESIVEMIEDILHRCTNDNFVCFVKVPNEMQPPFPVILKYPLSRYSNMP
KLQDLCRRVLQRQMSREQLAQLPVPAQMLEYLSVERELVFQS*
BS15041.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:10:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Socs44A-PA | 342 | CG2160-PA | 1..342 | 1..342 | 1810 | 100 | Plus |
Socs16D-PB | 1021 | CG8146-PB | 783..997 | 129..333 | 227 | 30.1 | Plus |
Socs16D-PA | 1016 | CG8146-PA | 845..992 | 189..333 | 225 | 34.2 | Plus |