Clone BS15044 Report

Search the DGRC for BS15044

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:150
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptCG11349-RA
Protein status:BS15044.pep: Imported from assembly
Sequenced Size:1889

Clone Sequence Records

BS15044.3prime Sequence

781 bp (775 high quality bases) assembled on 2006-10-23

> BS15044.3prime
ATGGTCTAGAAAGCTTTTAAAACTCGAATGACTGTTTGGGCTTCTGGTAG
TGATAGCCATCCTCACGATAGTCAGTGTCGTACTCCGAAGCAGATGTTTT
AAGATCCACATTGTTTCGCTTTGAACTGCGCCTATGAGATCGCAGTTGTT
TGGGAGCAACCACATAAGAGGACTGCTTGTTACTAGCCGCAAAGCCCAGA
AATCCTAGCTGCCCATCATCGTCCGCATCATCGTCATCGGGTATAAGGAC
TGAACGCTGATTAGGATTAACCGATACCAAAGCCCGCTGGTGTCCATGAT
GAGGATCGCTGTAGAAGTTGCCGTCTATGATGTTGGTGTCCTGTTGATTT
CCCAGCGCATTTGTGGGTCCCTGGAGATGGGGTTGTCCGAAAACGTTTCC
ATTCAGCACATTGAGACCCTGGTAGTTGGATCGATTGCGCTGTCGTCGGT
TGTTGAGGCGTGGTACTTGTCCCGCTGCCAATTGGGCTCCAATGGAGGGG
TCGGACTGTCGCTGATTGGGATCAAAAGCTCCTGGTCCAGCTGCATTGGG
TCGCTGGTTAGGCACGCCTTGTCCAGCTCCAAGTTGGGCACCTGTCGAAG
GATCAAATGCTCCCTGTGCACTTGGTCTCTGGTTAAAGCCCTGACCTGCA
CCCAATTGAGCACCCGTAGAAGGATCAAATGCTCCCTGTCCACTTGGTCT
TTGGTTAGAAACACCCTCACCTGCGCCCAATTGAGCACCTGTAGAAGGAT
CAAATGCTCCCTGTCCACTTGGTCTTTGGTT

BS15044.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG11349-PA 1857 CG11349-RA 1093..1857 781..17 3825 100 Minus
CG11349-PA 1857 CG11349-RA 1060..1155 739..644 405 96.8 Minus
CG11349-PA 1857 CG11349-RA 1092..1139 635..588 165 93.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:00:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG11349-RB 1970 CG11349-RB 1135..1899 781..17 3825 100 Minus
CG11349-RB 1970 CG11349-RB 1102..1299 739..542 585 87.1 Minus
CG11349-RB 1970 CG11349-RB 1210..1374 781..617 435 85.1 Minus
CG11349-RB 1970 CG11349-RB 1101..1185 665..584 270 89.4 Minus
CG11349-RB 1970 CG11349-RB 1282..1332 781..731 195 92.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:00:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4474260..4475024 781..17 3825 100 Minus
3L 28110227 3L 4474227..4474385 739..584 550 91.2 Minus
3L 28110227 3L 4474335..4474457 781..656 400 89.7 Minus
3L 28110227 3L 4474226..4474310 665..584 240 88.2 Minus
3L 28110227 3L 4474407..4474457 781..731 195 92.2 Minus
Blast to na_te.dros performed on 2015-02-12 16:00:20 has no hits.

BS15044.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:15:29 Download gff for BS15044.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11349-PA 1093..1857 17..781 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:48:24 Download gff for BS15044.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11349-PA 1093..1857 17..781 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:23:51 Download gff for BS15044.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11349-RB 1135..1899 17..781 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:34:22 Download gff for BS15044.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11349-RB 1135..1899 17..781 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:34:22 Download gff for BS15044.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4474260..4475024 17..781 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:23:51 Download gff for BS15044.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4474260..4475024 17..781 100   Minus

BS15044.5prime Sequence

908 bp (830 high quality bases) assembled on 2006-10-23

> BS15044.5prime
GAAGTTATCCGTCGACATGGCAATCGCATGTCTGGCGGACGTTTCCCATG
TGAAACACCACAAGCACCAGCGGCATCATCACTCCAGGGATCACGAAGAT
GACGATGAGGAGTCCCATTACCTACCTCCCCACGAGGAAAAGGAGGTGGA
GCAACCTTTTTACAAGAAGGAGAAGCACACCAGTGAAAAGGTGGTTTACC
ACAAGGTAGAGGAGCACGAGGAGCCCAAATACTACAAGGAGCATCAACAT
GAAGAGCCCAAAAAGCAGCGAGTGGATCACTACCATCACTATGACAAGAA
GCCAGAAGTAAAGACCCAGCACATTCACTACAAGCATAGCAAGCCCCATG
TCCGTACGGATTACAATCAGGACTTGTTCACCCCAGCTGCTACCCAAGTG
GTTTATCGCCGCCGTCGTCCTAGTCGAATTCTATACGCCAGTGCCCCCAA
CTCGGTGTTCCACACCCACACGCAGATCAACGTGCAGTCCCAGGATTCGG
AATTGAATTCCCTTACTCGCCCAGATCGTGCAGCAGGAGCACAGGATCCT
GCTGGGGCTCAAGCACCGACTGGAGCCCAGGCACCAGGATTTCGACCCAA
CTGCCAGTTTGTTGGACCTGGAAACGTACCACCTGGCTGTGGACCCTCTG
ATCCCATAGGTGCTCAGCTACCAGCCAGTGCTTTGGCTCCCACTGGTGCT
AATCTTCCGGCCAATCAACCTGTTGCCGGCGGACAATTGGCTGTTCTGGG
TAACGGTCAGCGACCTCCACGTCCAGGTGGCTATGGAGGTGGATATGGCA
ACCGACTCAACTTTTTTGTTGATCCTTCGCTGGGCGCTCAGCTGGGAGCC
ATAGGTAATGCTGGAGCTGGAAATCAACAGGCTGCCGGAGGAGGTCAGCT
TGCGGGAA

BS15044.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG11349-PA 1857 CG11349-RA 1..891 17..907 4455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:36:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG11349-RB 1970 CG11349-RB 43..933 17..907 4455 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:36:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4473168..4474058 17..907 4455 100 Plus
Blast to na_te.dros performed on 2015-02-11 04:36:07 has no hits.

BS15044.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:15:31 Download gff for BS15044.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11349-PA 1..890 17..906 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:48:26 Download gff for BS15044.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11349-PA 1..890 17..906 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:37:30 Download gff for BS15044.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11349-RB 43..933 17..908 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:37:04 Download gff for BS15044.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11349-RB 43..933 17..908 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:37:04 Download gff for BS15044.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4473168..4474058 17..908 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:37:30 Download gff for BS15044.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4473168..4474058 17..908 99   Plus

BS15044.complete Sequence

1889 bp assembled on 2008-08-14

GenBank Submission: KX805861

> BS15044.complete
GAAGTTATCCGTCGACATGGCAATCGCATGTCTGGCGGACGTTTCCCATG
TGAAACACCACAAGCACCAGCGGCATCATCACTCCAGGGATCACGAAGAT
GACGATGAGGAGTCCCATTACCTACCTCCCCACGAGGAAAAGGAGGTGGA
GCAACCTTTTTACAAGAAGGAGAAGCACACCAGTGAAAAGGTGGTTTACC
ACAAGGTAGAGGAGCACGAGGAGCCCAAATACTACAAGGAGCATCAACAT
GAAGAGCCCAAAAAGCAGCGAGTGGATCACTACCATCACTATGACAAGAA
GCCAGAAGTAAAGACCCAGCACATTCACTACAAGCATAGCAAGCCCCATG
TCCGTACGGATTACAATCAGGACTTGTTCACCCCAGCTGCTACCCAAGTG
GTTTATCGCCGCCGTCGTCCTAGTCGAATTCTATACGCCAGTGCCCCCAA
CTCGGTGTTCCACACCCACACGCAGATCAACGTGCAGTCCCAGGATTCGG
AATTGAATTCCCTTACTCGCCCAGATCGTGCAGCAGGAGCACAGGATCCT
GCTGGGGCTCAAGCACCGACTGGAGCCCAGGCACCAGGATTTCGACCCAA
CTGCCAGTTTGTTGGACCTGGAAACGTACCACCTGGCTGTGGACCCTCTG
ATCCCATAGGTGCTCAGCTACCAGCCAGTGCTTTGGCTCCCACTGGTGCT
AATCTTCCGGCCAATCAACCTGTTGCCGGCGGACAATTGGCTGTTCTGGG
TAACGGTCAGCGACCTCCACGTCCAGGTGGCTATGGAGGTGGATATGGCA
ACCGACTCAACTTTTTTGTTGATCCTTCGCTGGGCGCTCAGCTGGGAGCC
ATAGGTAATGCTGGAGCTGGAAATCAACAGGCTGCCGGAGGAGGTCAGCT
TGCGGGAGGAGCTCAACTTGGAGGGAGCCAAGGATTCGACCCTTCCTTTG
GTGCCCAAGCAGCTGCCGGAGGACCATTTAACACTGGTTTTGGAGCTGGT
CAAAGACCTCAAAGACCTGCGCAAAACCAATATGATCCCAACCTTCAGCT
AGGTGGCCCTTTTGACCCCTCCGTGGGTGCTCAATTGGGCGCAGGTCAGG
GTGTTTCTAACCAAAGACCAAGTGGACAGGGAGCATTTGATCCTTCTACA
GGTGCTCAATTGGGCGCAGGTGAGGGTGTTTCTAACCAAAGACCAAGTGG
ACAGGGAGCATTTGATCCTTCTACGGGTGCTCAATTGGGTGCAGGTCAGG
GCTTTAACCAGAGACCAAGTGCACAGGGAGCATTTGATCCTTCGACAGGT
GCCCAACTTGGAGCTGGACAAGGCGTGCCTAACCAGCGACCCAATGCAGC
TGGACCAGGAGCTTTTGATCCCAATCAGCGACAGTCCGACCCCTCCATTG
GAGCCCAATTGGCAGCGGGACAAGTACCACGCCTCAACAACCGACGACAG
CGCAATCGATCCAACTACCAGGGTCTCAATGTGCTGAATGGAAACGTTTT
CGGACAACCCCATCTCCAGGGACCCACAAATGCGCTGGGAAATCAACAGG
ACACCAACATCATAGACGGCAACTTCTACAGCGATCCTCATCATGGACAC
CAGCGGGCTTTGGTATCGGTTAATCCTAATCAGCGTTCAGTCCTTATACC
CGATGACGATGATGCGGACGATGATGGGCAGCTAGGATTTCTGGGCTTTG
CGGCTAGTAACAAGCAGTCCTCTTATGTGGTTGCTCCCAAACAACTGCGA
TCTCATAGGCGCAGTTCAAAGCGAAACAATGTGGATCTTAAAACATCTGC
TTCGGAGTACGACACTGACTATCGTGAGGATGGCTATCACTACCAGAAGC
CCAAACAGTCATTCGAGTTTTAAAAGCTTTCTAGACCAT

BS15044.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:07:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG11349-RB 1890 CG11349-PB 34..1890 17..1873 9285 100 Plus
CG11349-RB 1890 CG11349-PB 1093..1251 1151..1306 550 91.2 Plus
CG11349-RB 1890 CG11349-PB 1168..1323 1076..1234 550 91.2 Plus
CG11349-RB 1890 CG11349-PB 1092..1176 1225..1306 240 88.2 Plus
CG11349-RB 1890 CG11349-PB 1242..1323 1075..1159 240 88.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG11349-RB 1970 CG11349-RB 43..1899 17..1873 9285 100 Plus
CG11349-RB 1970 CG11349-RB 1102..1260 1151..1306 550 91.2 Plus
CG11349-RB 1970 CG11349-RB 1177..1332 1076..1234 550 91.2 Plus
CG11349-RB 1970 CG11349-RB 1101..1185 1225..1306 240 88.2 Plus
CG11349-RB 1970 CG11349-RB 1251..1332 1075..1159 240 88.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4473168..4475024 17..1873 9285 100 Plus
3L 28110227 3L 4474227..4474385 1151..1306 550 91.2 Plus
3L 28110227 3L 4474302..4474457 1076..1234 550 91.2 Plus
3L 28110227 3L 4474226..4474310 1225..1306 240 88.2 Plus
3L 28110227 3L 4474376..4474457 1075..1159 240 88.2 Plus
Blast to na_te.dros performed on 2014-11-28 01:07:32 has no hits.

BS15044.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:47:44 Download gff for BS15044.complete
Subject Subject Range Query Range Percent Splice Strand
CG11349-RA 24..1880 17..1873 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:39:41 Download gff for BS15044.complete
Subject Subject Range Query Range Percent Splice Strand
CG11349-RB 43..1897 17..1871 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:26:17 Download gff for BS15044.complete
Subject Subject Range Query Range Percent Splice Strand
CG11349-RA 24..1878 17..1871 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:09 Download gff for BS15044.complete
Subject Subject Range Query Range Percent Splice Strand
CG11349-RB 43..1897 17..1871 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:09 Download gff for BS15044.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4473168..4475022 17..1871 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:39:41 Download gff for BS15044.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4473168..4475022 17..1871 100   Plus

BS15044.pep Sequence

Translation from 16 to 1872

> BS15044.pep
MAIACLADVSHVKHHKHQRHHHSRDHEDDDEESHYLPPHEEKEVEQPFYK
KEKHTSEKVVYHKVEEHEEPKYYKEHQHEEPKKQRVDHYHHYDKKPEVKT
QHIHYKHSKPHVRTDYNQDLFTPAATQVVYRRRRPSRILYASAPNSVFHT
HTQINVQSQDSELNSLTRPDRAAGAQDPAGAQAPTGAQAPGFRPNCQFVG
PGNVPPGCGPSDPIGAQLPASALAPTGANLPANQPVAGGQLAVLGNGQRP
PRPGGYGGGYGNRLNFFVDPSLGAQLGAIGNAGAGNQQAAGGGQLAGGAQ
LGGSQGFDPSFGAQAAAGGPFNTGFGAGQRPQRPAQNQYDPNLQLGGPFD
PSVGAQLGAGQGVSNQRPSGQGAFDPSTGAQLGAGEGVSNQRPSGQGAFD
PSTGAQLGAGQGFNQRPSAQGAFDPSTGAQLGAGQGVPNQRPNAAGPGAF
DPNQRQSDPSIGAQLAAGQVPRLNNRRQRNRSNYQGLNVLNGNVFGQPHL
QGPTNALGNQQDTNIIDGNFYSDPHHGHQRALVSVNPNQRSVLIPDDDDA
DDDGQLGFLGFAASNKQSSYVVAPKQLRSHRRSSKRNNVDLKTSASEYDT
DYREDGYHYQKPKQSFEF*

BS15044.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:48:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG11349-PB 629 CG11349-PB 12..629 1..618 3339 100 Plus
prc-PB 1713 CG5700-PB 214..499 174..469 264 36.7 Plus
prc-PB 1713 CG5700-PB 333..641 174..469 262 34.3 Plus
prc-PB 1713 CG5700-PB 452..839 174..492 256 30.5 Plus
prc-PB 1713 CG5700-PB 123..414 193..469 236 34 Plus
prc-PB 1713 CG5700-PB 873..1192 174..510 213 31.3 Plus
CG10555-PB 926 CG10555-PB 499..816 169..471 179 27.2 Plus
CG10555-PA 926 CG10555-PA 499..816 169..471 179 27.2 Plus
Cpr47Ef-PD 601 CG13214-PD 203..430 202..449 169 29.7 Plus