Clone Sequence Records
BS15044.3prime Sequence
781 bp (775 high quality bases) assembled on 2006-10-23
> BS15044.3prime
ATGGTCTAGAAAGCTTTTAAAACTCGAATGACTGTTTGGGCTTCTGGTAG
TGATAGCCATCCTCACGATAGTCAGTGTCGTACTCCGAAGCAGATGTTTT
AAGATCCACATTGTTTCGCTTTGAACTGCGCCTATGAGATCGCAGTTGTT
TGGGAGCAACCACATAAGAGGACTGCTTGTTACTAGCCGCAAAGCCCAGA
AATCCTAGCTGCCCATCATCGTCCGCATCATCGTCATCGGGTATAAGGAC
TGAACGCTGATTAGGATTAACCGATACCAAAGCCCGCTGGTGTCCATGAT
GAGGATCGCTGTAGAAGTTGCCGTCTATGATGTTGGTGTCCTGTTGATTT
CCCAGCGCATTTGTGGGTCCCTGGAGATGGGGTTGTCCGAAAACGTTTCC
ATTCAGCACATTGAGACCCTGGTAGTTGGATCGATTGCGCTGTCGTCGGT
TGTTGAGGCGTGGTACTTGTCCCGCTGCCAATTGGGCTCCAATGGAGGGG
TCGGACTGTCGCTGATTGGGATCAAAAGCTCCTGGTCCAGCTGCATTGGG
TCGCTGGTTAGGCACGCCTTGTCCAGCTCCAAGTTGGGCACCTGTCGAAG
GATCAAATGCTCCCTGTGCACTTGGTCTCTGGTTAAAGCCCTGACCTGCA
CCCAATTGAGCACCCGTAGAAGGATCAAATGCTCCCTGTCCACTTGGTCT
TTGGTTAGAAACACCCTCACCTGCGCCCAATTGAGCACCTGTAGAAGGAT
CAAATGCTCCCTGTCCACTTGGTCTTTGGTT
BS15044.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11349-PA | 1857 | CG11349-RA | 1093..1857 | 781..17 | 3825 | 100 | Minus |
CG11349-PA | 1857 | CG11349-RA | 1060..1155 | 739..644 | 405 | 96.8 | Minus |
CG11349-PA | 1857 | CG11349-RA | 1092..1139 | 635..588 | 165 | 93.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:00:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11349-RB | 1970 | CG11349-RB | 1135..1899 | 781..17 | 3825 | 100 | Minus |
CG11349-RB | 1970 | CG11349-RB | 1102..1299 | 739..542 | 585 | 87.1 | Minus |
CG11349-RB | 1970 | CG11349-RB | 1210..1374 | 781..617 | 435 | 85.1 | Minus |
CG11349-RB | 1970 | CG11349-RB | 1101..1185 | 665..584 | 270 | 89.4 | Minus |
CG11349-RB | 1970 | CG11349-RB | 1282..1332 | 781..731 | 195 | 92.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:00:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4474260..4475024 | 781..17 | 3825 | 100 | Minus |
3L | 28110227 | 3L | 4474227..4474385 | 739..584 | 550 | 91.2 | Minus |
3L | 28110227 | 3L | 4474335..4474457 | 781..656 | 400 | 89.7 | Minus |
3L | 28110227 | 3L | 4474226..4474310 | 665..584 | 240 | 88.2 | Minus |
3L | 28110227 | 3L | 4474407..4474457 | 781..731 | 195 | 92.2 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:00:20 has no hits.
BS15044.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:15:29 Download gff for
BS15044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11349-PA | 1093..1857 | 17..781 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:48:24 Download gff for
BS15044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11349-PA | 1093..1857 | 17..781 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:23:51 Download gff for
BS15044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11349-RB | 1135..1899 | 17..781 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:34:22 Download gff for
BS15044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11349-RB | 1135..1899 | 17..781 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:34:22 Download gff for
BS15044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4474260..4475024 | 17..781 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:23:51 Download gff for
BS15044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4474260..4475024 | 17..781 | 100 | | Minus |
BS15044.5prime Sequence
908 bp (830 high quality bases) assembled on 2006-10-23
> BS15044.5prime
GAAGTTATCCGTCGACATGGCAATCGCATGTCTGGCGGACGTTTCCCATG
TGAAACACCACAAGCACCAGCGGCATCATCACTCCAGGGATCACGAAGAT
GACGATGAGGAGTCCCATTACCTACCTCCCCACGAGGAAAAGGAGGTGGA
GCAACCTTTTTACAAGAAGGAGAAGCACACCAGTGAAAAGGTGGTTTACC
ACAAGGTAGAGGAGCACGAGGAGCCCAAATACTACAAGGAGCATCAACAT
GAAGAGCCCAAAAAGCAGCGAGTGGATCACTACCATCACTATGACAAGAA
GCCAGAAGTAAAGACCCAGCACATTCACTACAAGCATAGCAAGCCCCATG
TCCGTACGGATTACAATCAGGACTTGTTCACCCCAGCTGCTACCCAAGTG
GTTTATCGCCGCCGTCGTCCTAGTCGAATTCTATACGCCAGTGCCCCCAA
CTCGGTGTTCCACACCCACACGCAGATCAACGTGCAGTCCCAGGATTCGG
AATTGAATTCCCTTACTCGCCCAGATCGTGCAGCAGGAGCACAGGATCCT
GCTGGGGCTCAAGCACCGACTGGAGCCCAGGCACCAGGATTTCGACCCAA
CTGCCAGTTTGTTGGACCTGGAAACGTACCACCTGGCTGTGGACCCTCTG
ATCCCATAGGTGCTCAGCTACCAGCCAGTGCTTTGGCTCCCACTGGTGCT
AATCTTCCGGCCAATCAACCTGTTGCCGGCGGACAATTGGCTGTTCTGGG
TAACGGTCAGCGACCTCCACGTCCAGGTGGCTATGGAGGTGGATATGGCA
ACCGACTCAACTTTTTTGTTGATCCTTCGCTGGGCGCTCAGCTGGGAGCC
ATAGGTAATGCTGGAGCTGGAAATCAACAGGCTGCCGGAGGAGGTCAGCT
TGCGGGAA
BS15044.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11349-PA | 1857 | CG11349-RA | 1..891 | 17..907 | 4455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:36:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11349-RB | 1970 | CG11349-RB | 43..933 | 17..907 | 4455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:36:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4473168..4474058 | 17..907 | 4455 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:36:07 has no hits.
BS15044.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:15:31 Download gff for
BS15044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11349-PA | 1..890 | 17..906 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:48:26 Download gff for
BS15044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11349-PA | 1..890 | 17..906 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:37:30 Download gff for
BS15044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11349-RB | 43..933 | 17..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:37:04 Download gff for
BS15044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11349-RB | 43..933 | 17..908 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:37:04 Download gff for
BS15044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4473168..4474058 | 17..908 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:37:30 Download gff for
BS15044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4473168..4474058 | 17..908 | 99 | | Plus |
BS15044.complete Sequence
1889 bp assembled on 2008-08-14
GenBank Submission: KX805861
> BS15044.complete
GAAGTTATCCGTCGACATGGCAATCGCATGTCTGGCGGACGTTTCCCATG
TGAAACACCACAAGCACCAGCGGCATCATCACTCCAGGGATCACGAAGAT
GACGATGAGGAGTCCCATTACCTACCTCCCCACGAGGAAAAGGAGGTGGA
GCAACCTTTTTACAAGAAGGAGAAGCACACCAGTGAAAAGGTGGTTTACC
ACAAGGTAGAGGAGCACGAGGAGCCCAAATACTACAAGGAGCATCAACAT
GAAGAGCCCAAAAAGCAGCGAGTGGATCACTACCATCACTATGACAAGAA
GCCAGAAGTAAAGACCCAGCACATTCACTACAAGCATAGCAAGCCCCATG
TCCGTACGGATTACAATCAGGACTTGTTCACCCCAGCTGCTACCCAAGTG
GTTTATCGCCGCCGTCGTCCTAGTCGAATTCTATACGCCAGTGCCCCCAA
CTCGGTGTTCCACACCCACACGCAGATCAACGTGCAGTCCCAGGATTCGG
AATTGAATTCCCTTACTCGCCCAGATCGTGCAGCAGGAGCACAGGATCCT
GCTGGGGCTCAAGCACCGACTGGAGCCCAGGCACCAGGATTTCGACCCAA
CTGCCAGTTTGTTGGACCTGGAAACGTACCACCTGGCTGTGGACCCTCTG
ATCCCATAGGTGCTCAGCTACCAGCCAGTGCTTTGGCTCCCACTGGTGCT
AATCTTCCGGCCAATCAACCTGTTGCCGGCGGACAATTGGCTGTTCTGGG
TAACGGTCAGCGACCTCCACGTCCAGGTGGCTATGGAGGTGGATATGGCA
ACCGACTCAACTTTTTTGTTGATCCTTCGCTGGGCGCTCAGCTGGGAGCC
ATAGGTAATGCTGGAGCTGGAAATCAACAGGCTGCCGGAGGAGGTCAGCT
TGCGGGAGGAGCTCAACTTGGAGGGAGCCAAGGATTCGACCCTTCCTTTG
GTGCCCAAGCAGCTGCCGGAGGACCATTTAACACTGGTTTTGGAGCTGGT
CAAAGACCTCAAAGACCTGCGCAAAACCAATATGATCCCAACCTTCAGCT
AGGTGGCCCTTTTGACCCCTCCGTGGGTGCTCAATTGGGCGCAGGTCAGG
GTGTTTCTAACCAAAGACCAAGTGGACAGGGAGCATTTGATCCTTCTACA
GGTGCTCAATTGGGCGCAGGTGAGGGTGTTTCTAACCAAAGACCAAGTGG
ACAGGGAGCATTTGATCCTTCTACGGGTGCTCAATTGGGTGCAGGTCAGG
GCTTTAACCAGAGACCAAGTGCACAGGGAGCATTTGATCCTTCGACAGGT
GCCCAACTTGGAGCTGGACAAGGCGTGCCTAACCAGCGACCCAATGCAGC
TGGACCAGGAGCTTTTGATCCCAATCAGCGACAGTCCGACCCCTCCATTG
GAGCCCAATTGGCAGCGGGACAAGTACCACGCCTCAACAACCGACGACAG
CGCAATCGATCCAACTACCAGGGTCTCAATGTGCTGAATGGAAACGTTTT
CGGACAACCCCATCTCCAGGGACCCACAAATGCGCTGGGAAATCAACAGG
ACACCAACATCATAGACGGCAACTTCTACAGCGATCCTCATCATGGACAC
CAGCGGGCTTTGGTATCGGTTAATCCTAATCAGCGTTCAGTCCTTATACC
CGATGACGATGATGCGGACGATGATGGGCAGCTAGGATTTCTGGGCTTTG
CGGCTAGTAACAAGCAGTCCTCTTATGTGGTTGCTCCCAAACAACTGCGA
TCTCATAGGCGCAGTTCAAAGCGAAACAATGTGGATCTTAAAACATCTGC
TTCGGAGTACGACACTGACTATCGTGAGGATGGCTATCACTACCAGAAGC
CCAAACAGTCATTCGAGTTTTAAAAGCTTTCTAGACCAT
BS15044.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:07:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11349-RB | 1890 | CG11349-PB | 34..1890 | 17..1873 | 9285 | 100 | Plus |
CG11349-RB | 1890 | CG11349-PB | 1093..1251 | 1151..1306 | 550 | 91.2 | Plus |
CG11349-RB | 1890 | CG11349-PB | 1168..1323 | 1076..1234 | 550 | 91.2 | Plus |
CG11349-RB | 1890 | CG11349-PB | 1092..1176 | 1225..1306 | 240 | 88.2 | Plus |
CG11349-RB | 1890 | CG11349-PB | 1242..1323 | 1075..1159 | 240 | 88.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11349-RB | 1970 | CG11349-RB | 43..1899 | 17..1873 | 9285 | 100 | Plus |
CG11349-RB | 1970 | CG11349-RB | 1102..1260 | 1151..1306 | 550 | 91.2 | Plus |
CG11349-RB | 1970 | CG11349-RB | 1177..1332 | 1076..1234 | 550 | 91.2 | Plus |
CG11349-RB | 1970 | CG11349-RB | 1101..1185 | 1225..1306 | 240 | 88.2 | Plus |
CG11349-RB | 1970 | CG11349-RB | 1251..1332 | 1075..1159 | 240 | 88.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4473168..4475024 | 17..1873 | 9285 | 100 | Plus |
3L | 28110227 | 3L | 4474227..4474385 | 1151..1306 | 550 | 91.2 | Plus |
3L | 28110227 | 3L | 4474302..4474457 | 1076..1234 | 550 | 91.2 | Plus |
3L | 28110227 | 3L | 4474226..4474310 | 1225..1306 | 240 | 88.2 | Plus |
3L | 28110227 | 3L | 4474376..4474457 | 1075..1159 | 240 | 88.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:07:32 has no hits.
BS15044.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:47:44 Download gff for
BS15044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11349-RA | 24..1880 | 17..1873 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:39:41 Download gff for
BS15044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11349-RB | 43..1897 | 17..1871 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:26:17 Download gff for
BS15044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11349-RA | 24..1878 | 17..1871 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:09 Download gff for
BS15044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11349-RB | 43..1897 | 17..1871 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:09 Download gff for
BS15044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4473168..4475022 | 17..1871 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:39:41 Download gff for
BS15044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4473168..4475022 | 17..1871 | 100 | | Plus |
BS15044.pep Sequence
Translation from 16 to 1872
> BS15044.pep
MAIACLADVSHVKHHKHQRHHHSRDHEDDDEESHYLPPHEEKEVEQPFYK
KEKHTSEKVVYHKVEEHEEPKYYKEHQHEEPKKQRVDHYHHYDKKPEVKT
QHIHYKHSKPHVRTDYNQDLFTPAATQVVYRRRRPSRILYASAPNSVFHT
HTQINVQSQDSELNSLTRPDRAAGAQDPAGAQAPTGAQAPGFRPNCQFVG
PGNVPPGCGPSDPIGAQLPASALAPTGANLPANQPVAGGQLAVLGNGQRP
PRPGGYGGGYGNRLNFFVDPSLGAQLGAIGNAGAGNQQAAGGGQLAGGAQ
LGGSQGFDPSFGAQAAAGGPFNTGFGAGQRPQRPAQNQYDPNLQLGGPFD
PSVGAQLGAGQGVSNQRPSGQGAFDPSTGAQLGAGEGVSNQRPSGQGAFD
PSTGAQLGAGQGFNQRPSAQGAFDPSTGAQLGAGQGVPNQRPNAAGPGAF
DPNQRQSDPSIGAQLAAGQVPRLNNRRQRNRSNYQGLNVLNGNVFGQPHL
QGPTNALGNQQDTNIIDGNFYSDPHHGHQRALVSVNPNQRSVLIPDDDDA
DDDGQLGFLGFAASNKQSSYVVAPKQLRSHRRSSKRNNVDLKTSASEYDT
DYREDGYHYQKPKQSFEF*
BS15044.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:48:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11349-PB | 629 | CG11349-PB | 12..629 | 1..618 | 3339 | 100 | Plus |
prc-PB | 1713 | CG5700-PB | 214..499 | 174..469 | 264 | 36.7 | Plus |
prc-PB | 1713 | CG5700-PB | 333..641 | 174..469 | 262 | 34.3 | Plus |
prc-PB | 1713 | CG5700-PB | 452..839 | 174..492 | 256 | 30.5 | Plus |
prc-PB | 1713 | CG5700-PB | 123..414 | 193..469 | 236 | 34 | Plus |
prc-PB | 1713 | CG5700-PB | 873..1192 | 174..510 | 213 | 31.3 | Plus |
CG10555-PB | 926 | CG10555-PB | 499..816 | 169..471 | 179 | 27.2 | Plus |
CG10555-PA | 926 | CG10555-PA | 499..816 | 169..471 | 179 | 27.2 | Plus |
Cpr47Ef-PD | 601 | CG13214-PD | 203..430 | 202..449 | 169 | 29.7 | Plus |