Clone Sequence Records
BS15045.3prime Sequence
810 bp (721 high quality bases) assembled on 2006-10-23
> BS15045.3prime
ATGGTCTAGAAAGCTTCTAGAAGAGATGCGCCAGATAGCTTCTCCAAAGC
CAGAGGATCAGCTTGTAAAGCAAAAAGAGGCGAAGCAGCCGGTAGAGGAA
CACCTTGATCCTTAAGATTCTCTTGGAACGCTCCAGAGTTTTCGGATCTT
CTCGAAGCAAGTGCGTTCGGATACTGTGGAGCATGTTGCTGCAGGATTGG
ATCACCAGGCCATGGATGTCCGGATGGTTGAAGGCATCGAAGTTGAATGC
AGAACCCTCGCCGTGCTTGGACAGCGTCTCCATGTCCGAAACCCCGGGAC
TGTCCCAATTGTTGAACATGAAGGGCTGCATCACCTCCAGCGTTTGGTAG
GCCTTGCGAACCGCACTCATCAGCACGGGCTTCTGACCGAAAATCCTTAG
AAGCAAGTCGAGAATAAGGGCCGGCAGGATCTGCTTGGTAAAGACGAGAA
ACTGGTAGGCCCACCGTTTGTCCGTGTAGTGGCAGCCCGGGATCATCAGG
TTCTTTTCAAATGCCACATCCCGCCACAAGTCCAGCGTGTCCATCTGCTC
GGCAATCTGGGTGAAGGTGTGCGGCACGTGGGTGCAAGACGAGGACAGGA
AAACTGGCAGATCAGCCGGTGGGCCCTGCCTGTAAATATCGTAGCCCATT
TTGGTGTAACACAGCATGCTCTTGATGCCAATGTCCTGCGGCGTGATGTC
CAATCGAATGTCCTTGCCCAGGTAAACAGTCTTGAGGATTCCAGCGCCGA
CCAGCGCGAACAGTCCCATGGCGCCCATCAAGGATGGCGAGAATCCGGGC
GATGGGTCCT
BS15045.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18031-PA | 1515 | CG18031-RA | 722..1515 | 810..17 | 3970 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:27:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18031-RA | 1681 | CG18031-RA | 793..1587 | 810..16 | 3975 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:27:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2202273..2202828 | 255..810 | 2780 | 100 | Plus |
X | 23542271 | X | 2202060..2202207 | 108..255 | 740 | 100 | Plus |
X | 23542271 | X | 2201914..2202005 | 16..107 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:27:24 has no hits.
BS15045.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:15:32 Download gff for
BS15045.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18031-PA | 722..1515 | 17..810 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:48:27 Download gff for
BS15045.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18031-PA | 722..1515 | 17..810 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:28:53 Download gff for
BS15045.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18031-RA | 731..1527 | 12..810 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:43:36 Download gff for
BS15045.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18031-RA | 793..1589 | 12..810 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:43:36 Download gff for
BS15045.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2201912..2202005 | 12..107 | 97 | <- | Plus |
X | 2202060..2202206 | 108..254 | 100 | <- | Plus |
X | 2202273..2202828 | 255..810 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:28:53 Download gff for
BS15045.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2095945..2096038 | 12..107 | 97 | <- | Plus |
arm_X | 2096093..2096239 | 108..254 | 100 | <- | Plus |
arm_X | 2096306..2096861 | 255..810 | 100 | | Plus |
BS15045.5prime Sequence
838 bp (794 high quality bases) assembled on 2006-10-23
> BS15045.5prime
GAAGTTATCCTTCGACATGCACCATCCACTATCCGGGGAAATGGAGGAAT
TCTTCGAGGATAGCGAAATATTCGTGACGGGCGGATCGGGAGTGGTGGGC
AAGGCGCTGGTCGAGAAGCTCCTGCGCTCCTGCAACGTTCGGCGCATCTA
CGTCCTGCTGCGTCCTCGCAAACAGCTAACAGCGGAGCAGAGACTCGTCC
GACTGCGGCAGGCCACTGTCTTCCACGTACTGGCCGTACAAAAACCCGAA
GAGCTGGACAAGATCGTGGCGGTCCCGGGCGACGTCTCTTTGCCGGGACT
GGGCATCGATCCCTCGATGATGCAGCGTATGAAAGGTGTTTCCCTGGTCT
ACCACTGTGCCGCCACGGTGCGATTCGATGAGCCGCTTCGCGAGGCAGTA
CGTCTGAATGTCGGAGGCACCTTGGAGGCGCTTAAGTTCGCCGAGACTCT
GCCCCAGCTGAGGGCCTTCATCCACGTTTCCACATTCTACAGTAATCCCT
ATTTGACACGTGTGGAGCCCAAGTACTACTCCTCGCCGATGGACTGGCGG
TTGTGCCTCCGAATGATCGACGATGTCGCAGACGACGGGATGCTCAACGC
GTTAACAAGAAAGTTGATCATGGGCTTTCCCAACACGTATACGTTTACCA
AAAACCTGGCCGAATCCCTGGTGAATGACTACCGCCATCGGCTGCCAGTA
ATAGTGTATCGTCCTTCCATAGTTCTCTTTGCCGTGGAGGACCCATCGCC
CGGATTCTCGCCATCCTTGATGGGCGCCATGGGACTGTTCGCGCTGGTCG
GCGCTGGAATCCTCAAGACTGTTTACCTGGGCAAGGAC
BS15045.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18031-PA | 1515 | CG18031-RA | 1..822 | 17..838 | 4110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:14:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18031-RA | 1681 | CG18031-RA | 72..893 | 17..838 | 4110 | 100 | Plus |
CG4020-RB | 1886 | CG4020-RB | 230..309 | 53..132 | 190 | 84 | Plus |
CG4020-RA | 1750 | CG4020-RA | 94..173 | 53..132 | 190 | 84 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:14:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2203289..2203795 | 523..17 | 2535 | 100 | Minus |
X | 23542271 | X | 2202728..2202845 | 838..721 | 590 | 100 | Minus |
X | 23542271 | X | 2202899..2203008 | 722..613 | 550 | 100 | Minus |
X | 23542271 | X | 2203131..2203223 | 614..522 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:14:14 has no hits.
BS15045.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:15:33 Download gff for
BS15045.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18031-PA | 1..822 | 17..838 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:48:29 Download gff for
BS15045.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18031-PA | 1..822 | 17..838 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:53:03 Download gff for
BS15045.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18031-RA | 5..831 | 12..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:18:47 Download gff for
BS15045.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18031-RA | 67..893 | 12..838 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:18:47 Download gff for
BS15045.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2202728..2202843 | 723..838 | 100 | <- | Minus |
X | 2202899..2203008 | 613..722 | 100 | <- | Minus |
X | 2203133..2203221 | 524..612 | 100 | <- | Minus |
X | 2203289..2203800 | 12..523 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:53:03 Download gff for
BS15045.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2096761..2096876 | 723..838 | 100 | <- | Minus |
arm_X | 2096932..2097041 | 613..722 | 100 | <- | Minus |
arm_X | 2097166..2097254 | 524..612 | 100 | <- | Minus |
arm_X | 2097322..2097833 | 12..523 | 99 | | Minus |
BS15045.complete Sequence
1547 bp assembled on 2008-08-14
GenBank Submission: KX800530
> BS15045.complete
GAAGTTATCCTTCGACATGCACCATCCACTATCCGGGGAAATGGAGGAAT
TCTTCGAGGATAGCGAAATATTCGTGACGGGCGGATCGGGAGTGGTGGGC
AAGGCGCTGGTCGAGAAGCTCCTGCGCTCCTGCAACGTTCGGCGCATCTA
CGTCCTGCTGCGTCCTCGCAAACAGCTAACAGCGGAGCAGAGACTCGTCC
GACTGCGGCAGGCCACTGTCTTCCACGTACTGGCCGTACAAAAACCCGAA
GAGCTGGACAAGATCGTGGCGGTCCCGGGCGACGTCTCTTTGCCGGGACT
GGGCATCGATCCCTCGATGATGCAGCGTATGAAAGGTGTTTCCCTGGTCT
ACCACTGTGCCGCCACGGTGCGATTCGATGAGCCGCTTCGCGAGGCAGTA
CGTCTGAATGTCGGAGGCACCTTGGAGGCGCTTAAGTTCGCCGAGACTCT
GCCCCAGCTGAGGGCCTTCATCCACGTTTCCACATTCTACAGTAATCCCT
ATTTGACACGTGTGGAGCCCAAGTACTACTCCTCGCCGATGGACTGGCGG
TTGTGCCTCCGAATGATCGACGATGTCGCAGACGACGGGATGCTCAACGC
GTTAACAAGAAAGTTGATCATGGGCTTTCCCAACACGTATACGTTTACCA
AAAACCTGGCCGAATCCCTGGTGAATGACTACCGCCATCGGCTGCCAGTA
ATAGTGTATCGTCCTTCCATAGTTCTCTTTGCCGTGGAGGACCCATCGCC
CGGATTCTCGCCATCCTTGATGGGCGCCATGGGACTGTTCGCGCTGGTCG
GCGCTGGAATCCTCAAGACTGTTTACCTGGGCAAGGACATTCGATTGGAC
ATCACGCCGCAGGACATTGGCATCAAGAGCATGCTGTGTTACACCAAAAT
GGGCTACGATATTTACAGGCAGGGCCCACCGGCTGATCTGCCAGTTTTCC
TGTCCTCGTCTTGCACCCACGTGCCGCACACCTTCACCCAGATTGCCGAG
CAGATGGACACGCTGGACTTGTGGCGGGATGTGGCATTTGAAAAGAACCT
GATGATCCCGGGCTGCCACTACACGGACAAACGGTGGGCCTACCAGTTTC
TCGTCTTTACCAAGCAGATCCTGCCGGCCCTTATTCTCGACTTGCTTCTA
AGGATTTTCGGTCAGAAGCCCGTGCTGATGAGTGCGGTTCGCAAGGCCTA
CCAAACGCTGGAGGTGATGCAGCCCTTCATGTTCAACAATTGGGACAGTC
CCGGGGTTTCGGACATGGAGACGCTGTCCAAGCACGGCGAGGGTTCTGCA
TTCAACTTCGATGCCTTCAACCATCCGGACATCCATGGCCTGGTGATCCA
ATCCTGCAGCAACATGCTCCACAGTATCCGAACGCACTTGCTTCGAGAAG
ATCCGAAAACTCTGGAGCGTTCCAAGAGAATCTTAAGGATCAAGGTGTTC
CTCTACCGGCTGCTTCGCCTCTTTTTGCTTTACAAGCTGATCCTCTGGCT
TTGGAGAAGCTATCTGGCGCATCTCTTCTAGAAGCTTTCTAGACCAT
BS15045.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:40:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18031-RA | 1515 | CG18031-PA | 1..1515 | 17..1531 | 7575 | 100 | Plus |
CG4020-RB | 1485 | CG4020-PB | 19..98 | 53..132 | 190 | 82.5 | Plus |
CG4020-RA | 1485 | CG4020-PA | 19..98 | 53..132 | 190 | 82.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:40:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18031-RA | 1681 | CG18031-RA | 72..1587 | 17..1532 | 7580 | 100 | Plus |
CG4020-RB | 1886 | CG4020-RB | 230..309 | 53..132 | 190 | 82.5 | Plus |
CG4020-RA | 1750 | CG4020-RA | 94..173 | 53..132 | 190 | 82.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:40:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2202273..2202845 | 1293..721 | 2865 | 100 | Minus |
X | 23542271 | X | 2203289..2203795 | 523..17 | 2535 | 100 | Minus |
X | 23542271 | X | 2202060..2202207 | 1440..1293 | 740 | 100 | Minus |
X | 23542271 | X | 2202899..2203008 | 722..613 | 550 | 100 | Minus |
X | 23542271 | X | 2203131..2203223 | 614..522 | 465 | 100 | Minus |
X | 23542271 | X | 2201914..2202005 | 1532..1441 | 460 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:40:54 has no hits.
BS15045.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:47:46 Download gff for
BS15045.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18031-RA | 5..1527 | 12..1536 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:12 Download gff for
BS15045.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18031-RA | 10..1524 | 17..1531 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:09:08 Download gff for
BS15045.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18031-RA | 10..1524 | 17..1531 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:24:10 Download gff for
BS15045.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18031-RA | 72..1586 | 17..1531 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:24:10 Download gff for
BS15045.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2202060..2202206 | 1294..1440 | 100 | <- | Minus |
X | 2201915..2202005 | 1441..1531 | 100 | <- | Minus |
X | 2202273..2202843 | 723..1293 | 100 | <- | Minus |
X | 2202899..2203008 | 613..722 | 100 | <- | Minus |
X | 2203133..2203221 | 524..612 | 100 | <- | Minus |
X | 2203289..2203795 | 17..523 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:12 Download gff for
BS15045.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2095948..2096038 | 1441..1531 | 100 | <- | Minus |
arm_X | 2096093..2096239 | 1294..1440 | 100 | <- | Minus |
arm_X | 2096306..2096876 | 723..1293 | 100 | <- | Minus |
arm_X | 2096932..2097041 | 613..722 | 100 | <- | Minus |
arm_X | 2097166..2097254 | 524..612 | 100 | <- | Minus |
arm_X | 2097322..2097828 | 17..523 | 100 | | Minus |
BS15045.pep Sequence
Translation from 16 to 1530
> BS15045.pep
MHHPLSGEMEEFFEDSEIFVTGGSGVVGKALVEKLLRSCNVRRIYVLLRP
RKQLTAEQRLVRLRQATVFHVLAVQKPEELDKIVAVPGDVSLPGLGIDPS
MMQRMKGVSLVYHCAATVRFDEPLREAVRLNVGGTLEALKFAETLPQLRA
FIHVSTFYSNPYLTRVEPKYYSSPMDWRLCLRMIDDVADDGMLNALTRKL
IMGFPNTYTFTKNLAESLVNDYRHRLPVIVYRPSIVLFAVEDPSPGFSPS
LMGAMGLFALVGAGILKTVYLGKDIRLDITPQDIGIKSMLCYTKMGYDIY
RQGPPADLPVFLSSSCTHVPHTFTQIAEQMDTLDLWRDVAFEKNLMIPGC
HYTDKRWAYQFLVFTKQILPALILDLLLRIFGQKPVLMSAVRKAYQTLEV
MQPFMFNNWDSPGVSDMETLSKHGEGSAFNFDAFNHPDIHGLVIQSCSNM
LHSIRTHLLREDPKTLERSKRILRIKVFLYRLLRLFLLYKLILWLWRSYL
AHLF*
BS15045.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:48:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18031-PA | 504 | CG18031-PA | 1..504 | 1..504 | 2629 | 100 | Plus |
CG4020-PB | 494 | CG4020-PB | 5..494 | 11..496 | 719 | 35.5 | Plus |
CG4020-PA | 494 | CG4020-PA | 5..494 | 11..496 | 719 | 35.5 | Plus |
wat-PA | 517 | CG1443-PA | 32..507 | 9..494 | 621 | 32 | Plus |
CG8306-PA | 516 | CG8306-PA | 3..494 | 6..495 | 594 | 30.9 | Plus |