Clone BS15049 Report

Search the DGRC for BS15049

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:150
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptTsp42Ec-RA
Protein status:BS15049.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15049.3prime Sequence

730 bp (727 high quality bases) assembled on 2006-10-23

> BS15049.3prime
ATGGTCTAGAAAGCTTTTAGGCGTACACCTGGCGACCTGCGTTCTGGCTG
CGCATGCAGTTGGTCAGGGCGCCGGCGATGAGGAAGACGACCAGGTCGAA
GATGCAGAGGCCGAGGCCGGACCAGCGGATGATGTCCATGTTGTCGTTCC
AGAACTCCTCGAACTTGGCGCTGCAGCCGGGCCTCGACTGGTAGACCGAG
GGGGTGTTGCATGTGGCCTGGCGGTCCAGGTAGCCGCAGCAGGTTCCGGG
AACCGAAAGGCCGATGTTGTTGTAGTTGGTATAGCTCGTATCACCGCAGC
AGCCGAAGGTTTCCTCAAGAACGCCCATGGCAGTGTAGTCATGGGAGTCC
CAGAGCAAGTTAACCAGATTGGACATATCGCCCAGGAAGGCAGATCGGTT
CACGAACACCCAGCACGTAAGCACCAGTTGCAGGATAAAGAGCACAAAAA
CCATGCTGGTGTACGCGCCGGTCATGCAGACACTCTGCCGAAAAATGCCG
TAGCACCCGAAGAAGGACACCACGAAGATGAGGCCTCCCAGGACGGTGAC
GCAGATGGGGATGGTGTTCGGGTCCGTCCCACTCCCCGCGACATCGAAGC
GGCTCAGATCGGACAGCATGATCGAGCCCAACACGATCAGTAGGATGCCA
ACGATCAAAAACACGATATTGACAATATATAAAATAAAGTTGACTATTCC
CGATAGACAACCCATGTCGACTGATAACTT

BS15049.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG12847-PA 699 Tsp42Ec-RA 1..699 715..17 3495 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:27:50
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ec-RA 1025 CG12847-RA 132..831 715..16 3500 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:27:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7007980..7008428 464..16 2245 100 Minus
2R 25286936 2R 7007725..7007917 656..464 965 100 Minus
2R 25286936 2R 7001437..7001514 656..579 390 100 Minus
2R 25286936 2R 7000285..7000344 715..656 300 100 Minus
2R 25286936 2R 7006573..7006632 715..656 300 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:27:47 has no hits.

BS15049.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:15:36 Download gff for BS15049.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12847-PA 1..699 17..715 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:48:33 Download gff for BS15049.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12847-PA 1..699 17..715 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:28:57 Download gff for BS15049.3prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ec-RA 127..834 11..720 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:20:41 Download gff for BS15049.3prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ec-RA 127..834 11..720 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:20:41 Download gff for BS15049.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7006568..7006632 656..720 96 -> Minus
2R 7007726..7007917 464..655 100 -> Minus
2R 7007981..7008431 11..463 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:28:57 Download gff for BS15049.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2894073..2894137 656..720 96 -> Minus
arm_2R 2895231..2895422 464..655 100 -> Minus
arm_2R 2895486..2895936 11..463 99   Minus

BS15049.5prime Sequence

729 bp (695 high quality bases) assembled on 2006-10-23

> BS15049.5prime
GAAGTTATCCTTCGAGATGGGTTGTCTATCGGGAATAGTCAACTTTATTT
TATATATTGTCAATATCGTGTTTTTGATCGTTCTCATCCTACTGATCGTG
TTGGGCTCGATCATGCTGTCCGATCTGAGCCGCTTCGATGTCGCGGGGAG
TGGGACGGACCCGAACACCATCCCCATCTGCGTCACCGTCCTGGGAGGCC
TCATCTTCGTGGTGTCCTTCTTCGGGTGCTACGGCATTTTTCGGCAGAGT
GTCTGCATGACCGGCGCGTACACCAGCATGGTTTTTGTGCTCTTTATCCT
GCAACTGGTGCTTACGTGCTGGGTGTTCGTGAACCGATCTGCCTTCCTGG
GCGATATGTCCAATCTGGTTAACTTGCTCTGGGACTCCCATGACTACACT
GCCATGGGCGTTCTTGAGGAAACCTTCGGCTGCTGCGGTGATACGAGCTA
TACCAACTACAACAACATCGGCCTTTCGGTTCCCGGAACCTGCTGCGGCT
ACCTGGACCGCCAGGCCACATGCAACACCCCCTCGGTCTACCAGTCGAGG
CCCGGCTGCAGCGCCAAGTTCGAGGAGTTCTGGAACGACAACATGGACAT
CATCCGCTGGTCCGGCCTCGGCCTCTGCATCTTCGACCTGGTCGTCTTCC
TCATCGCCGGCGCCCTGACCAACTGCATGCGCAGCCAGAACGCAGGTCGC
CAGGTGTACGCCTAAAAGCTTTCTAGACC

BS15049.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG12847-PA 699 Tsp42Ec-RA 1..699 17..715 3445 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:16:56
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ec-RA 1025 CG12847-RA 132..831 17..716 3470 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:16:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7007980..7008428 268..716 2245 100 Plus
2R 25286936 2R 7007725..7007917 76..268 935 99 Plus
2R 25286936 2R 7001437..7001514 76..153 360 97.4 Plus
2R 25286936 2R 7000285..7000344 17..76 300 100 Plus
2R 25286936 2R 7006573..7006632 17..76 300 100 Plus
Blast to na_te.dros performed on 2015-02-04 21:16:54 has no hits.

BS15049.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:15:37 Download gff for BS15049.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12847-PA 1..699 17..715 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:48:35 Download gff for BS15049.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12847-PA 1..699 17..715 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:41:20 Download gff for BS15049.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ec-RA 120..834 6..721 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:45:05 Download gff for BS15049.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ec-RA 120..834 6..721 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:45:05 Download gff for BS15049.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7006561..7006632 6..76 94 -> Plus
2R 7007726..7007917 77..268 98 -> Plus
2R 7007981..7008431 269..721 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:41:20 Download gff for BS15049.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2894066..2894137 6..76 94 -> Plus
arm_2R 2895231..2895422 77..268 98 -> Plus
arm_2R 2895486..2895936 269..721 99   Plus

BS15049.complete Sequence

731 bp assembled on 2006-11-01

GenBank Submission: FJ637861

> BS15049.complete
GAAGTTATCAGTCGACATGGGTTGTCTATCGGGAATAGTCAACTTTATTT
TATATATTGTCAATATCGTGTTTTTGATCGTTGGCATCCTACTGATCGTG
TTGGGCTCGATCATGCTGTCCGATCTGAGCCGCTTCGATGTCGCGGGGAG
TGGGACGGACCCGAACACCATCCCCATCTGCGTCACCGTCCTGGGAGGCC
TCATCTTCGTGGTGTCCTTCTTCGGGTGCTACGGCATTTTTCGGCAGAGT
GTCTGCATGACCGGCGCGTACACCAGCATGGTTTTTGTGCTCTTTATCCT
GCAACTGGTGCTTACGTGCTGGGTGTTCGTGAACCGATCTGCCTTCCTGG
GCGATATGTCCAATCTGGTTAACTTGCTCTGGGACTCCCATGACTACACT
GCCATGGGCGTTCTTGAGGAAACCTTCGGCTGCTGCGGTGATACGAGCTA
TACCAACTACAACAACATCGGCCTTTCGGTTCCCGGAACCTGCTGCGGCT
ACCTGGACCGCCAGGCCACATGCAACACCCCCTCGGTCTACCAGTCGAGG
CCCGGCTGCAGCGCCAAGTTCGAGGAGTTCTGGAACGACAACATGGACAT
CATCCGCTGGTCCGGCCTCGGCCTCTGCATCTTCGACCTGGTCGTCTTCC
TCATCGCCGGCGCCCTGACCAACTGCATGCGCAGCCAGAACGCAGGTCGC
CAGGTGTACGCCTAAAAGCTTTCTAGACCAT

BS15049.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:41:38
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ec-RA 699 CG12847-PA 1..699 17..715 3495 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:41:39
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ec-RA 1025 CG12847-RA 132..831 17..716 3500 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:41:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7007980..7008428 268..716 2245 100 Plus
2R 25286936 2R 7007725..7007917 76..268 965 100 Plus
2R 25286936 2R 7001437..7001514 76..153 390 100 Plus
2R 25286936 2R 7000285..7000344 17..76 300 100 Plus
2R 25286936 2R 7006573..7006632 17..76 300 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:41:36 has no hits.

BS15049.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:23:42 Download gff for BS15049.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ec-RA 1..699 17..715 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:55:14 Download gff for BS15049.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ec-RA 122..829 12..721 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:29:42 Download gff for BS15049.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ec-RA 132..828 17..713 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:23:42 Download gff for BS15049.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ec-RA 122..829 12..721 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:22 Download gff for BS15049.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ec-RA 132..828 17..713 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:22 Download gff for BS15049.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7006573..7006632 17..76 100 -> Plus
2R 7007726..7007917 77..268 100 -> Plus
2R 7007981..7008425 269..713 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:29:42 Download gff for BS15049.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2894078..2894137 17..76 100 -> Plus
arm_2R 2895231..2895422 77..268 100 -> Plus
arm_2R 2895486..2895930 269..713 100   Plus

BS15049.pep Sequence

Translation from 16 to 714

> BS15049.pep
MGCLSGIVNFILYIVNIVFLIVGILLIVLGSIMLSDLSRFDVAGSGTDPN
TIPICVTVLGGLIFVVSFFGCYGIFRQSVCMTGAYTSMVFVLFILQLVLT
CWVFVNRSAFLGDMSNLVNLLWDSHDYTAMGVLEETFGCCGDTSYTNYNN
IGLSVPGTCCGYLDRQATCNTPSVYQSRPGCSAKFEEFWNDNMDIIRWSG
LGLCIFDLVVFLIAGALTNCMRSQNAGRQVYA*

BS15049.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:34:37
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ec-PA 232 CG12847-PA 1..232 1..232 1236 100 Plus
CG30160-PA 222 CG30160-PA 1..222 1..224 513 41.9 Plus
Tsp42Eb-PB 222 CG18816-PB 1..222 1..224 513 41.9 Plus
Tsp42Ed-PB 227 CG12846-PB 1..227 1..231 365 34.3 Plus
Tsp42Ed-PA 227 CG12846-PA 1..227 1..231 365 34.3 Plus