Clone Sequence Records
BS15049.3prime Sequence
730 bp (727 high quality bases) assembled on 2006-10-23
> BS15049.3prime
ATGGTCTAGAAAGCTTTTAGGCGTACACCTGGCGACCTGCGTTCTGGCTG
CGCATGCAGTTGGTCAGGGCGCCGGCGATGAGGAAGACGACCAGGTCGAA
GATGCAGAGGCCGAGGCCGGACCAGCGGATGATGTCCATGTTGTCGTTCC
AGAACTCCTCGAACTTGGCGCTGCAGCCGGGCCTCGACTGGTAGACCGAG
GGGGTGTTGCATGTGGCCTGGCGGTCCAGGTAGCCGCAGCAGGTTCCGGG
AACCGAAAGGCCGATGTTGTTGTAGTTGGTATAGCTCGTATCACCGCAGC
AGCCGAAGGTTTCCTCAAGAACGCCCATGGCAGTGTAGTCATGGGAGTCC
CAGAGCAAGTTAACCAGATTGGACATATCGCCCAGGAAGGCAGATCGGTT
CACGAACACCCAGCACGTAAGCACCAGTTGCAGGATAAAGAGCACAAAAA
CCATGCTGGTGTACGCGCCGGTCATGCAGACACTCTGCCGAAAAATGCCG
TAGCACCCGAAGAAGGACACCACGAAGATGAGGCCTCCCAGGACGGTGAC
GCAGATGGGGATGGTGTTCGGGTCCGTCCCACTCCCCGCGACATCGAAGC
GGCTCAGATCGGACAGCATGATCGAGCCCAACACGATCAGTAGGATGCCA
ACGATCAAAAACACGATATTGACAATATATAAAATAAAGTTGACTATTCC
CGATAGACAACCCATGTCGACTGATAACTT
BS15049.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12847-PA | 699 | Tsp42Ec-RA | 1..699 | 715..17 | 3495 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:27:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ec-RA | 1025 | CG12847-RA | 132..831 | 715..16 | 3500 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:27:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7007980..7008428 | 464..16 | 2245 | 100 | Minus |
2R | 25286936 | 2R | 7007725..7007917 | 656..464 | 965 | 100 | Minus |
2R | 25286936 | 2R | 7001437..7001514 | 656..579 | 390 | 100 | Minus |
2R | 25286936 | 2R | 7000285..7000344 | 715..656 | 300 | 100 | Minus |
2R | 25286936 | 2R | 7006573..7006632 | 715..656 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:27:47 has no hits.
BS15049.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:15:36 Download gff for
BS15049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12847-PA | 1..699 | 17..715 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:48:33 Download gff for
BS15049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12847-PA | 1..699 | 17..715 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:28:57 Download gff for
BS15049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ec-RA | 127..834 | 11..720 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:20:41 Download gff for
BS15049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ec-RA | 127..834 | 11..720 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:20:41 Download gff for
BS15049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7006568..7006632 | 656..720 | 96 | -> | Minus |
2R | 7007726..7007917 | 464..655 | 100 | -> | Minus |
2R | 7007981..7008431 | 11..463 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:28:57 Download gff for
BS15049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2894073..2894137 | 656..720 | 96 | -> | Minus |
arm_2R | 2895231..2895422 | 464..655 | 100 | -> | Minus |
arm_2R | 2895486..2895936 | 11..463 | 99 | | Minus |
BS15049.5prime Sequence
729 bp (695 high quality bases) assembled on 2006-10-23
> BS15049.5prime
GAAGTTATCCTTCGAGATGGGTTGTCTATCGGGAATAGTCAACTTTATTT
TATATATTGTCAATATCGTGTTTTTGATCGTTCTCATCCTACTGATCGTG
TTGGGCTCGATCATGCTGTCCGATCTGAGCCGCTTCGATGTCGCGGGGAG
TGGGACGGACCCGAACACCATCCCCATCTGCGTCACCGTCCTGGGAGGCC
TCATCTTCGTGGTGTCCTTCTTCGGGTGCTACGGCATTTTTCGGCAGAGT
GTCTGCATGACCGGCGCGTACACCAGCATGGTTTTTGTGCTCTTTATCCT
GCAACTGGTGCTTACGTGCTGGGTGTTCGTGAACCGATCTGCCTTCCTGG
GCGATATGTCCAATCTGGTTAACTTGCTCTGGGACTCCCATGACTACACT
GCCATGGGCGTTCTTGAGGAAACCTTCGGCTGCTGCGGTGATACGAGCTA
TACCAACTACAACAACATCGGCCTTTCGGTTCCCGGAACCTGCTGCGGCT
ACCTGGACCGCCAGGCCACATGCAACACCCCCTCGGTCTACCAGTCGAGG
CCCGGCTGCAGCGCCAAGTTCGAGGAGTTCTGGAACGACAACATGGACAT
CATCCGCTGGTCCGGCCTCGGCCTCTGCATCTTCGACCTGGTCGTCTTCC
TCATCGCCGGCGCCCTGACCAACTGCATGCGCAGCCAGAACGCAGGTCGC
CAGGTGTACGCCTAAAAGCTTTCTAGACC
BS15049.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12847-PA | 699 | Tsp42Ec-RA | 1..699 | 17..715 | 3445 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:16:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ec-RA | 1025 | CG12847-RA | 132..831 | 17..716 | 3470 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:16:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7007980..7008428 | 268..716 | 2245 | 100 | Plus |
2R | 25286936 | 2R | 7007725..7007917 | 76..268 | 935 | 99 | Plus |
2R | 25286936 | 2R | 7001437..7001514 | 76..153 | 360 | 97.4 | Plus |
2R | 25286936 | 2R | 7000285..7000344 | 17..76 | 300 | 100 | Plus |
2R | 25286936 | 2R | 7006573..7006632 | 17..76 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 21:16:54 has no hits.
BS15049.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:15:37 Download gff for
BS15049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12847-PA | 1..699 | 17..715 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:48:35 Download gff for
BS15049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12847-PA | 1..699 | 17..715 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:41:20 Download gff for
BS15049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ec-RA | 120..834 | 6..721 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:45:05 Download gff for
BS15049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ec-RA | 120..834 | 6..721 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:45:05 Download gff for
BS15049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7006561..7006632 | 6..76 | 94 | -> | Plus |
2R | 7007726..7007917 | 77..268 | 98 | -> | Plus |
2R | 7007981..7008431 | 269..721 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:41:20 Download gff for
BS15049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2894066..2894137 | 6..76 | 94 | -> | Plus |
arm_2R | 2895231..2895422 | 77..268 | 98 | -> | Plus |
arm_2R | 2895486..2895936 | 269..721 | 99 | | Plus |
BS15049.complete Sequence
731 bp assembled on 2006-11-01
GenBank Submission: FJ637861
> BS15049.complete
GAAGTTATCAGTCGACATGGGTTGTCTATCGGGAATAGTCAACTTTATTT
TATATATTGTCAATATCGTGTTTTTGATCGTTGGCATCCTACTGATCGTG
TTGGGCTCGATCATGCTGTCCGATCTGAGCCGCTTCGATGTCGCGGGGAG
TGGGACGGACCCGAACACCATCCCCATCTGCGTCACCGTCCTGGGAGGCC
TCATCTTCGTGGTGTCCTTCTTCGGGTGCTACGGCATTTTTCGGCAGAGT
GTCTGCATGACCGGCGCGTACACCAGCATGGTTTTTGTGCTCTTTATCCT
GCAACTGGTGCTTACGTGCTGGGTGTTCGTGAACCGATCTGCCTTCCTGG
GCGATATGTCCAATCTGGTTAACTTGCTCTGGGACTCCCATGACTACACT
GCCATGGGCGTTCTTGAGGAAACCTTCGGCTGCTGCGGTGATACGAGCTA
TACCAACTACAACAACATCGGCCTTTCGGTTCCCGGAACCTGCTGCGGCT
ACCTGGACCGCCAGGCCACATGCAACACCCCCTCGGTCTACCAGTCGAGG
CCCGGCTGCAGCGCCAAGTTCGAGGAGTTCTGGAACGACAACATGGACAT
CATCCGCTGGTCCGGCCTCGGCCTCTGCATCTTCGACCTGGTCGTCTTCC
TCATCGCCGGCGCCCTGACCAACTGCATGCGCAGCCAGAACGCAGGTCGC
CAGGTGTACGCCTAAAAGCTTTCTAGACCAT
BS15049.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:41:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ec-RA | 699 | CG12847-PA | 1..699 | 17..715 | 3495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:41:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ec-RA | 1025 | CG12847-RA | 132..831 | 17..716 | 3500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:41:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7007980..7008428 | 268..716 | 2245 | 100 | Plus |
2R | 25286936 | 2R | 7007725..7007917 | 76..268 | 965 | 100 | Plus |
2R | 25286936 | 2R | 7001437..7001514 | 76..153 | 390 | 100 | Plus |
2R | 25286936 | 2R | 7000285..7000344 | 17..76 | 300 | 100 | Plus |
2R | 25286936 | 2R | 7006573..7006632 | 17..76 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:41:36 has no hits.
BS15049.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:23:42 Download gff for
BS15049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ec-RA | 1..699 | 17..715 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:55:14 Download gff for
BS15049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ec-RA | 122..829 | 12..721 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:29:42 Download gff for
BS15049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ec-RA | 132..828 | 17..713 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:23:42 Download gff for
BS15049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ec-RA | 122..829 | 12..721 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:22 Download gff for
BS15049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp42Ec-RA | 132..828 | 17..713 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:22 Download gff for
BS15049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7006573..7006632 | 17..76 | 100 | -> | Plus |
2R | 7007726..7007917 | 77..268 | 100 | -> | Plus |
2R | 7007981..7008425 | 269..713 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:29:42 Download gff for
BS15049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2894078..2894137 | 17..76 | 100 | -> | Plus |
arm_2R | 2895231..2895422 | 77..268 | 100 | -> | Plus |
arm_2R | 2895486..2895930 | 269..713 | 100 | | Plus |
BS15049.pep Sequence
Translation from 16 to 714
> BS15049.pep
MGCLSGIVNFILYIVNIVFLIVGILLIVLGSIMLSDLSRFDVAGSGTDPN
TIPICVTVLGGLIFVVSFFGCYGIFRQSVCMTGAYTSMVFVLFILQLVLT
CWVFVNRSAFLGDMSNLVNLLWDSHDYTAMGVLEETFGCCGDTSYTNYNN
IGLSVPGTCCGYLDRQATCNTPSVYQSRPGCSAKFEEFWNDNMDIIRWSG
LGLCIFDLVVFLIAGALTNCMRSQNAGRQVYA*
BS15049.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:34:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp42Ec-PA | 232 | CG12847-PA | 1..232 | 1..232 | 1236 | 100 | Plus |
CG30160-PA | 222 | CG30160-PA | 1..222 | 1..224 | 513 | 41.9 | Plus |
Tsp42Eb-PB | 222 | CG18816-PB | 1..222 | 1..224 | 513 | 41.9 | Plus |
Tsp42Ed-PB | 227 | CG12846-PB | 1..227 | 1..231 | 365 | 34.3 | Plus |
Tsp42Ed-PA | 227 | CG12846-PA | 1..227 | 1..231 | 365 | 34.3 | Plus |