Clone BS15050 Report

Search the DGRC for BS15050

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:150
Well:50
Vector:pDNR-Dual
Associated Gene/TranscriptCG9989-RA
Protein status:BS15050.pep: full length peptide match
Sequenced Size:1145

Clone Sequence Records

BS15050.3prime Sequence

815 bp (807 high quality bases) assembled on 2006-10-23

> BS15050.3prime
ATGGTCTAGAAAGCTTTTAGCAAACACCAGTTAAGTGTGGAGCGTTTATG
GTAATAAAACGGTACGGATCGCAGCAGACAGTGTGTCCAACGTCCTTCGT
ATTAAGGTTAAGACCCGGATGACAGGGTATCACATGGCAGATCTGGTTTA
ATGCCTGCTGATTGGGTAGACTTACGTCGTTGTAGGTCAGCATTACCCAT
TTATCTCCGGAGAGATGGCTAACTATCTTGTACATCCACTCTGGCACGGG
AATTTTGTTATTATCCAACAGGTAAATTGGTATCATATTGTTATTGGTAT
TATGTCTTAGTCTATGCACTCCCAATGCCCCAATGCAAACCTTAAGGACA
TCGTAAGTACGCGGTATTTGTACATTATTGATGATTGGATTATCATACAG
TCCCCTAACCATATTGTTCACCCAGGTCTCAACGGCCTTCCATTTGCCAC
GATTAACTCCTCGATATTGGGGGATAGCGTTTAGATACCTGAACGTTGAC
TTCTTCAGCTCTGTGGATATAAATGCAGAAGCCGGTGTCATGTGGCCACG
ATCAAATTTACACTGCGGCTGTACTGCGCCCAGGTTAGTGAGCAAACAAG
CTTGTGTTGCTCTTCCCTCGTAGGCATTGTCAAATCCACCACTTAATTGA
TCCGACTGCCAAGTGGGATTGGGACGTGGAACGGTGTTTACGTAGCGATA
AGCCTTGTAGATGGAATGTTGAAACGCCAAGCTGTAGCCATCAAAACAAT
TGCGATACAGTTCCATAAAGCGTCCATTGAAGGAAAATCCTACGGCGAAC
GTAGCACTCGGAATG

BS15050.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG9989-PA 1113 CG9989-RA 315..1113 815..17 3995 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:27:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG9989-RA 1214 CG9989-RA 349..1147 815..17 3995 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:27:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28671287..28671954 684..17 3340 100 Minus
3R 32079331 3R 28671106..28671236 815..685 655 100 Minus
Blast to na_te.dros performed on 2015-02-13 15:27:28 has no hits.

BS15050.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:15:38 Download gff for BS15050.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9989-PA 315..1113 17..815 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:48:37 Download gff for BS15050.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9989-PA 315..1113 17..815 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:54:18 Download gff for BS15050.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9989-RA 349..1147 17..815 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:49:52 Download gff for BS15050.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9989-RA 349..1147 17..815 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:49:52 Download gff for BS15050.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 28671106..28671236 685..815 100 -> Minus
3R 28671287..28671954 17..684 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:54:18 Download gff for BS15050.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24496828..24496958 685..815 100 -> Minus
arm_3R 24497009..24497676 17..684 100   Minus

BS15050.5prime Sequence

813 bp (811 high quality bases) assembled on 2006-10-23

> BS15050.5prime
GAAGTTATCCGTCGACATGCCCGATCTGAAGTATATGTTGACGATTCTAA
GCCTGTATTTCTTTGTAGGAAGTGTTCAAGCGACCTGCTTAATCGACTTG
GCTCATTTGAATGCCAATTATGTGTACTTAAGCCAAAATAACGGAGTCTA
TGATATTCAGCGCAGTGATATTGTGGAAATCCACCAGACGTTGTATCTGC
TGTGCAATGGAGGACTTCATCGCACCACATTCCTGTGTCGATATGACAGT
GTTTTCAGTCCAGCGCTAAGCTCAGCAGCATGTGCACCACCCGATCCTGT
CGTGGTAAAAGTACCAGATACATCTTGTTCCATTCCGAGTGCTACGTTCG
CCGTAGGATTTTCCTTCAATGGACGCTTTATGGAACTGTATCGCAATTGT
TTTGATGGCTACAGCTTGGCGTTTCAACATTCCATCTACAAGGCTTATCG
CTACGTAAACACCGTTCCACGTCCCAATCCCACTTGGCAGTCGGATCAAT
TAAGTGGTGGATTTGACAATGCCTACGAGGGAAGAGCAACACAAGCTTGT
TTGCTCACTAACCTGGGCGCAGTACAGCCGCAGTGTAAATTTGATCGTGG
CCACATGACACCGGCTTCTGCATTTATATCCACAGAGCTGAAGAAGTCAA
CGTTCAGGTATCTAAACGCTATCCCCCAATATCGAGGAGTTAATCGTGGC
AAATGGAAGGCCGTTGAGACCTGAGTGAACAATATGGTTAGGGGACTGTA
TGATAATCCAATCATCAATAATGTACAAATACCGCGTACTTACGATGTCC
TTAAGGTTTGCAT

BS15050.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG9989-PA 1113 CG9989-RA 1..797 17..813 3910 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:13:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG9989-RA 1214 CG9989-RA 35..831 17..813 3940 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:12:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28670838..28671236 63..461 1965 99.5 Plus
3R 32079331 3R 28671287..28671638 462..813 1745 99.7 Plus
3R 32079331 3R 28670738..28670783 17..62 230 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:12:59 has no hits.

BS15050.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:15:39 Download gff for BS15050.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9989-PA 1..797 17..813 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:48:38 Download gff for BS15050.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9989-PA 1..797 17..813 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:20:00 Download gff for BS15050.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9989-RA 29..831 11..813 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:04:30 Download gff for BS15050.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9989-RA 29..831 11..813 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:04:30 Download gff for BS15050.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 28670732..28670783 11..62 94 -> Plus
3R 28670838..28671236 63..461 99 -> Plus
3R 28671287..28671638 462..813 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:20:00 Download gff for BS15050.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24496454..24496505 11..62 94 -> Plus
arm_3R 24496560..24496958 63..461 99 -> Plus
arm_3R 24497009..24497360 462..813 99   Plus

BS15050.complete Sequence

1145 bp assembled on 2009-12-07

GenBank Submission: KX804473

> BS15050.complete
GAAGTTATCAGTCGACATGCCCGATCTGAAGTATATGTTGACGATTCTAA
GCCTGTATTTCTTTGTAGGAAGTGTTCAAGCGAATTGCTTAATCGACTTG
GCTCATTTGAATGCCAATTATGTGTACTTAAGCCAAAATAACGGAGTCTA
TGATATTCAGCGCAGTGATATTGTGGAAATCCACCAGACGTTGTATCTGC
TGTGCAATGGAGGACTTCATCGCACCACATTCCTGTGTCGATATGACAGT
GTTTTCAGTCCAGCGCTAAGCTCAGCAGCATGTGCACCACCCGATCCTGT
CGTGGTAAAAGTACCAGATACATCTTGTTCCATTCCGAGTGCTACGTTCG
CCGTAGGATTTTCCTTCAATGGACGCTTTATGGAACTGTATCGCAATTGT
TTTGATGGCTACAGCTTGGCGTTTCAACATTCCATCTACAAGGCTTATCG
CTACGTAAACACCGTTCCACGTCCCAATCCCACTTGGCAGTCGGATCAAT
TAAGTGGTGGATTTGACAATGCCTACGAGGGAAGAGCAACACAAGCTTGT
TTGCTCACTAACCTGGGCGCAGTACAGCCGCAGTGTAAATTTGATCGTGG
CCACATGACACCGGCTTCTGCATTTATATCCACAGAGCTGAAGAAGTCAA
CGTTCAGGTATCTAAACGCTATCCCCCAATATCGAGGAGTTAATCGTGGC
AAATGGAAGGCCGTTGAGACCTGGGTGAACAATATGGTTAGGGGACTGTA
TGATAATCCAATCATCAATAATGTACAAATACCGCGTACTTACGATGTCC
TTAAGGTTTGCATTGGGGCATTGGGAGTGCATAGACTAAGACATAATACC
AATAACAATATGATACCAATTTACCTGTTGGATAATAACAAAATTCCCGT
GCCAGAGTGGATGTACAAGATAGTTAGCCATCTCTCCGGAGATAAATGGG
TAATGCTGACCTACAACGACGTAAGTCTACCCAATCAGCAGGCATTAAAC
CAGATCTGCCATGTGATACCCTGTCATCCGGGTCTTAACCTTAATACGAA
GGACGTTGGACACACTGTCTGCTGCGATCCGTACCGTTTTATTACCATAA
ACGCTCCACACTTAACTGGTGTTTGCTAAAAGCTTTCTAGACCAT

BS15050.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:29:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG9989-RA 1113 CG9989-PA 1..1113 17..1129 5565 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:29:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG9989-RA 1214 CG9989-RA 35..1147 17..1129 5565 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:29:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28671287..28671954 462..1129 3340 100 Plus
3R 32079331 3R 28670838..28671236 63..461 1995 100 Plus
3R 32079331 3R 28670738..28670783 17..62 230 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:29:36 has no hits.

BS15050.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:39 Download gff for BS15050.complete
Subject Subject Range Query Range Percent Splice Strand
CG9989-RA 3..1113 17..1127 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:28 Download gff for BS15050.complete
Subject Subject Range Query Range Percent Splice Strand
CG9989-RA 35..1145 17..1127 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:21:09 Download gff for BS15050.complete
Subject Subject Range Query Range Percent Splice Strand
CG9989-RA 3..1113 17..1127 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:36 Download gff for BS15050.complete
Subject Subject Range Query Range Percent Splice Strand
CG9989-RA 35..1145 17..1127 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:36 Download gff for BS15050.complete
Subject Subject Range Query Range Percent Splice Strand
3R 28670738..28670783 17..62 100 -> Plus
3R 28670838..28671236 63..461 100 -> Plus
3R 28671287..28671952 462..1127 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:28 Download gff for BS15050.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24496460..24496505 17..62 100 -> Plus
arm_3R 24496560..24496958 63..461 100 -> Plus
arm_3R 24497009..24497674 462..1127 100   Plus

BS15050.pep Sequence

Translation from 16 to 1128

> BS15050.pep
MPDLKYMLTILSLYFFVGSVQANCLIDLAHLNANYVYLSQNNGVYDIQRS
DIVEIHQTLYLLCNGGLHRTTFLCRYDSVFSPALSSAACAPPDPVVVKVP
DTSCSIPSATFAVGFSFNGRFMELYRNCFDGYSLAFQHSIYKAYRYVNTV
PRPNPTWQSDQLSGGFDNAYEGRATQACLLTNLGAVQPQCKFDRGHMTPA
SAFISTELKKSTFRYLNAIPQYRGVNRGKWKAVETWVNNMVRGLYDNPII
NNVQIPRTYDVLKVCIGALGVHRLRHNTNNNMIPIYLLDNNKIPVPEWMY
KIVSHLSGDKWVMLTYNDVSLPNQQALNQICHVIPCHPGLNLNTKDVGHT
VCCDPYRFITINAPHLTGVC*

BS15050.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:44:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG9989-PA 370 CG9989-PA 1..370 1..370 2015 100 Plus
CG33346-PB 364 CG33346-PB 3..357 1..370 489 33.2 Plus
CG12917-PB 356 CG12917-PB 7..354 3..358 335 27.7 Plus
CG14062-PB 346 CG14062-PB 5..344 10..358 304 28 Plus