Clone Sequence Records
BS15050.3prime Sequence
815 bp (807 high quality bases) assembled on 2006-10-23
> BS15050.3prime
ATGGTCTAGAAAGCTTTTAGCAAACACCAGTTAAGTGTGGAGCGTTTATG
GTAATAAAACGGTACGGATCGCAGCAGACAGTGTGTCCAACGTCCTTCGT
ATTAAGGTTAAGACCCGGATGACAGGGTATCACATGGCAGATCTGGTTTA
ATGCCTGCTGATTGGGTAGACTTACGTCGTTGTAGGTCAGCATTACCCAT
TTATCTCCGGAGAGATGGCTAACTATCTTGTACATCCACTCTGGCACGGG
AATTTTGTTATTATCCAACAGGTAAATTGGTATCATATTGTTATTGGTAT
TATGTCTTAGTCTATGCACTCCCAATGCCCCAATGCAAACCTTAAGGACA
TCGTAAGTACGCGGTATTTGTACATTATTGATGATTGGATTATCATACAG
TCCCCTAACCATATTGTTCACCCAGGTCTCAACGGCCTTCCATTTGCCAC
GATTAACTCCTCGATATTGGGGGATAGCGTTTAGATACCTGAACGTTGAC
TTCTTCAGCTCTGTGGATATAAATGCAGAAGCCGGTGTCATGTGGCCACG
ATCAAATTTACACTGCGGCTGTACTGCGCCCAGGTTAGTGAGCAAACAAG
CTTGTGTTGCTCTTCCCTCGTAGGCATTGTCAAATCCACCACTTAATTGA
TCCGACTGCCAAGTGGGATTGGGACGTGGAACGGTGTTTACGTAGCGATA
AGCCTTGTAGATGGAATGTTGAAACGCCAAGCTGTAGCCATCAAAACAAT
TGCGATACAGTTCCATAAAGCGTCCATTGAAGGAAAATCCTACGGCGAAC
GTAGCACTCGGAATG
BS15050.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9989-PA | 1113 | CG9989-RA | 315..1113 | 815..17 | 3995 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:27:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9989-RA | 1214 | CG9989-RA | 349..1147 | 815..17 | 3995 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:27:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 28671287..28671954 | 684..17 | 3340 | 100 | Minus |
3R | 32079331 | 3R | 28671106..28671236 | 815..685 | 655 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:27:28 has no hits.
BS15050.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:15:38 Download gff for
BS15050.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9989-PA | 315..1113 | 17..815 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:48:37 Download gff for
BS15050.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9989-PA | 315..1113 | 17..815 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:54:18 Download gff for
BS15050.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9989-RA | 349..1147 | 17..815 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:49:52 Download gff for
BS15050.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9989-RA | 349..1147 | 17..815 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:49:52 Download gff for
BS15050.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28671106..28671236 | 685..815 | 100 | -> | Minus |
3R | 28671287..28671954 | 17..684 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:54:18 Download gff for
BS15050.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24496828..24496958 | 685..815 | 100 | -> | Minus |
arm_3R | 24497009..24497676 | 17..684 | 100 | | Minus |
BS15050.5prime Sequence
813 bp (811 high quality bases) assembled on 2006-10-23
> BS15050.5prime
GAAGTTATCCGTCGACATGCCCGATCTGAAGTATATGTTGACGATTCTAA
GCCTGTATTTCTTTGTAGGAAGTGTTCAAGCGACCTGCTTAATCGACTTG
GCTCATTTGAATGCCAATTATGTGTACTTAAGCCAAAATAACGGAGTCTA
TGATATTCAGCGCAGTGATATTGTGGAAATCCACCAGACGTTGTATCTGC
TGTGCAATGGAGGACTTCATCGCACCACATTCCTGTGTCGATATGACAGT
GTTTTCAGTCCAGCGCTAAGCTCAGCAGCATGTGCACCACCCGATCCTGT
CGTGGTAAAAGTACCAGATACATCTTGTTCCATTCCGAGTGCTACGTTCG
CCGTAGGATTTTCCTTCAATGGACGCTTTATGGAACTGTATCGCAATTGT
TTTGATGGCTACAGCTTGGCGTTTCAACATTCCATCTACAAGGCTTATCG
CTACGTAAACACCGTTCCACGTCCCAATCCCACTTGGCAGTCGGATCAAT
TAAGTGGTGGATTTGACAATGCCTACGAGGGAAGAGCAACACAAGCTTGT
TTGCTCACTAACCTGGGCGCAGTACAGCCGCAGTGTAAATTTGATCGTGG
CCACATGACACCGGCTTCTGCATTTATATCCACAGAGCTGAAGAAGTCAA
CGTTCAGGTATCTAAACGCTATCCCCCAATATCGAGGAGTTAATCGTGGC
AAATGGAAGGCCGTTGAGACCTGAGTGAACAATATGGTTAGGGGACTGTA
TGATAATCCAATCATCAATAATGTACAAATACCGCGTACTTACGATGTCC
TTAAGGTTTGCAT
BS15050.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9989-PA | 1113 | CG9989-RA | 1..797 | 17..813 | 3910 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:13:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9989-RA | 1214 | CG9989-RA | 35..831 | 17..813 | 3940 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:12:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 28670838..28671236 | 63..461 | 1965 | 99.5 | Plus |
3R | 32079331 | 3R | 28671287..28671638 | 462..813 | 1745 | 99.7 | Plus |
3R | 32079331 | 3R | 28670738..28670783 | 17..62 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:12:59 has no hits.
BS15050.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:15:39 Download gff for
BS15050.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9989-PA | 1..797 | 17..813 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:48:38 Download gff for
BS15050.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9989-PA | 1..797 | 17..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:20:00 Download gff for
BS15050.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9989-RA | 29..831 | 11..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:04:30 Download gff for
BS15050.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9989-RA | 29..831 | 11..813 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:04:30 Download gff for
BS15050.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28670732..28670783 | 11..62 | 94 | -> | Plus |
3R | 28670838..28671236 | 63..461 | 99 | -> | Plus |
3R | 28671287..28671638 | 462..813 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:20:00 Download gff for
BS15050.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24496454..24496505 | 11..62 | 94 | -> | Plus |
arm_3R | 24496560..24496958 | 63..461 | 99 | -> | Plus |
arm_3R | 24497009..24497360 | 462..813 | 99 | | Plus |
BS15050.complete Sequence
1145 bp assembled on 2009-12-07
GenBank Submission: KX804473
> BS15050.complete
GAAGTTATCAGTCGACATGCCCGATCTGAAGTATATGTTGACGATTCTAA
GCCTGTATTTCTTTGTAGGAAGTGTTCAAGCGAATTGCTTAATCGACTTG
GCTCATTTGAATGCCAATTATGTGTACTTAAGCCAAAATAACGGAGTCTA
TGATATTCAGCGCAGTGATATTGTGGAAATCCACCAGACGTTGTATCTGC
TGTGCAATGGAGGACTTCATCGCACCACATTCCTGTGTCGATATGACAGT
GTTTTCAGTCCAGCGCTAAGCTCAGCAGCATGTGCACCACCCGATCCTGT
CGTGGTAAAAGTACCAGATACATCTTGTTCCATTCCGAGTGCTACGTTCG
CCGTAGGATTTTCCTTCAATGGACGCTTTATGGAACTGTATCGCAATTGT
TTTGATGGCTACAGCTTGGCGTTTCAACATTCCATCTACAAGGCTTATCG
CTACGTAAACACCGTTCCACGTCCCAATCCCACTTGGCAGTCGGATCAAT
TAAGTGGTGGATTTGACAATGCCTACGAGGGAAGAGCAACACAAGCTTGT
TTGCTCACTAACCTGGGCGCAGTACAGCCGCAGTGTAAATTTGATCGTGG
CCACATGACACCGGCTTCTGCATTTATATCCACAGAGCTGAAGAAGTCAA
CGTTCAGGTATCTAAACGCTATCCCCCAATATCGAGGAGTTAATCGTGGC
AAATGGAAGGCCGTTGAGACCTGGGTGAACAATATGGTTAGGGGACTGTA
TGATAATCCAATCATCAATAATGTACAAATACCGCGTACTTACGATGTCC
TTAAGGTTTGCATTGGGGCATTGGGAGTGCATAGACTAAGACATAATACC
AATAACAATATGATACCAATTTACCTGTTGGATAATAACAAAATTCCCGT
GCCAGAGTGGATGTACAAGATAGTTAGCCATCTCTCCGGAGATAAATGGG
TAATGCTGACCTACAACGACGTAAGTCTACCCAATCAGCAGGCATTAAAC
CAGATCTGCCATGTGATACCCTGTCATCCGGGTCTTAACCTTAATACGAA
GGACGTTGGACACACTGTCTGCTGCGATCCGTACCGTTTTATTACCATAA
ACGCTCCACACTTAACTGGTGTTTGCTAAAAGCTTTCTAGACCAT
BS15050.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:29:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9989-RA | 1113 | CG9989-PA | 1..1113 | 17..1129 | 5565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:29:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9989-RA | 1214 | CG9989-RA | 35..1147 | 17..1129 | 5565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:29:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 28671287..28671954 | 462..1129 | 3340 | 100 | Plus |
3R | 32079331 | 3R | 28670838..28671236 | 63..461 | 1995 | 100 | Plus |
3R | 32079331 | 3R | 28670738..28670783 | 17..62 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:29:36 has no hits.
BS15050.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:39 Download gff for
BS15050.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9989-RA | 3..1113 | 17..1127 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:28 Download gff for
BS15050.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9989-RA | 35..1145 | 17..1127 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:21:09 Download gff for
BS15050.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9989-RA | 3..1113 | 17..1127 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:36 Download gff for
BS15050.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9989-RA | 35..1145 | 17..1127 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:36 Download gff for
BS15050.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28670738..28670783 | 17..62 | 100 | -> | Plus |
3R | 28670838..28671236 | 63..461 | 100 | -> | Plus |
3R | 28671287..28671952 | 462..1127 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:28 Download gff for
BS15050.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24496460..24496505 | 17..62 | 100 | -> | Plus |
arm_3R | 24496560..24496958 | 63..461 | 100 | -> | Plus |
arm_3R | 24497009..24497674 | 462..1127 | 100 | | Plus |
BS15050.pep Sequence
Translation from 16 to 1128
> BS15050.pep
MPDLKYMLTILSLYFFVGSVQANCLIDLAHLNANYVYLSQNNGVYDIQRS
DIVEIHQTLYLLCNGGLHRTTFLCRYDSVFSPALSSAACAPPDPVVVKVP
DTSCSIPSATFAVGFSFNGRFMELYRNCFDGYSLAFQHSIYKAYRYVNTV
PRPNPTWQSDQLSGGFDNAYEGRATQACLLTNLGAVQPQCKFDRGHMTPA
SAFISTELKKSTFRYLNAIPQYRGVNRGKWKAVETWVNNMVRGLYDNPII
NNVQIPRTYDVLKVCIGALGVHRLRHNTNNNMIPIYLLDNNKIPVPEWMY
KIVSHLSGDKWVMLTYNDVSLPNQQALNQICHVIPCHPGLNLNTKDVGHT
VCCDPYRFITINAPHLTGVC*
BS15050.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:44:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9989-PA | 370 | CG9989-PA | 1..370 | 1..370 | 2015 | 100 | Plus |
CG33346-PB | 364 | CG33346-PB | 3..357 | 1..370 | 489 | 33.2 | Plus |
CG12917-PB | 356 | CG12917-PB | 7..354 | 3..358 | 335 | 27.7 | Plus |
CG14062-PB | 346 | CG14062-PB | 5..344 | 10..358 | 304 | 28 | Plus |