Clone BS15053 Report

Search the DGRC for BS15053

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:150
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptCG11103-RB
Protein status:BS15053.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15053.3prime Sequence

549 bp (549 high quality bases) assembled on 2006-10-23

> BS15053.3prime
ATGGTCTAGAAAGCTTCTAGACATAGGGATTCCAATTGCTGCCGTCCTCG
GGCAGCAAATTGTTGGTGATCAGGAGGATGACGTCGATGATCCACCAAAC
GCCCACGCCGCCCATGGTAAGCAGTTTGCCCACAGCCGTGCCCGTTTGAC
CGAGACAGAAGCGATCCATACCGAGGAAACCCAGCAGCATGCTGTAGATC
AGTGTGGTCACAAAGTAGTGATCCGTGTAGCGGACACAGGGCACTCCGGC
GCGCAGAAAGGTGCGATTACCGTAGCACTCGATGTCGGCAAACACGGTGC
ACCAGACCATGGCGTGCTCCACCTCTTCGTACGTGGAACCACCGAACTTC
AGGCATCCGTATTTCTTTTCCTGCTGCGCCGTGGCGTTCTCCCGATGATC
GACGGGATCCTTGCAATCGAGAAAGTCGCGCGGCAGAAACGAGCACATCA
CATTCGGTCCCAGTGGATAGAAGGCCGAGTTTCCAGCTCCGCCCGAGGCG
GAAGATGCCGAAGATGACGATGAGGAGGGTCCCATGTCGACTGATAACT

BS15053.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG11103-PB 519 CG11103-RB 1..519 535..17 2595 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:07:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG11103-RB 923 CG11103-RB 196..716 536..16 2605 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:07:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13782654..13783174 536..16 2605 100 Minus
Blast to na_te.dros performed on 2015-02-13 07:07:08 has no hits.

BS15053.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:15:42 Download gff for BS15053.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11103-PB 1..519 17..535 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:48:42 Download gff for BS15053.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11103-PB 1..519 17..535 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:50:35 Download gff for BS15053.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11103-RB 191..716 16..544 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:25:48 Download gff for BS15053.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11103-RB 191..716 16..544 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:25:48 Download gff for BS15053.3prime
Subject Subject Range Query Range Percent Splice Strand
X 13782649..13783174 16..544 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:50:35 Download gff for BS15053.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13676682..13677207 16..544 99   Minus

BS15053.5prime Sequence

549 bp (549 high quality bases) assembled on 2006-10-23

> BS15053.5prime
GAAGTTATCCTTCGACATGGGACCCTCCTCATCGTCATCTTCGGCATCTT
CCGCCTCGGGCGGAGCTGGAAACTCGGCCTTCTATCCACTGGGACCGAAT
GTGATGTGCTCGTTTCTGCCGCGCGACTTTCTCGATTGCAAGGATCCCGT
CGATCATCGGGAGAACGCCACGGCGCAGCAGGAAAAGAAATACGGATGCC
TGAAGTTCGGTGGTTCCACGTACGAAGAGGTGGAGCACGCCATGGTCTGG
TGCACCGTGTTTGCCGACATCGAGTGCTACGGTAATCGCACCTTTCTGCG
CGCCGGAGTGCCCTGTGTCCGCTACACGGATCACTACTTTGTGACCACAC
TGATCTACAGCATGCTGCTGGGTTTCCTCGGTATGGATCGCTTCTGTCTC
GGTCAAACGGGCACGGCTGTGGGCAAACTGCTTACCATGGGCGGCGTGGG
CGTTTGGTGGATCATCGACGTCATCCTCCTGATCACCAACAATTTGCTGC
CCGAGGACGGCAGCAATTGGAATCCCTATGTCTAGAAGCTTTCTAGACC

BS15053.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG11103-PB 519 CG11103-RB 1..519 17..535 2595 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:51:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG11103-RB 923 CG11103-RB 196..716 16..536 2605 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:51:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13782654..13783174 16..536 2605 100 Plus
Blast to na_te.dros performed on 2015-02-12 23:51:28 has no hits.

BS15053.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:15:43 Download gff for BS15053.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11103-PB 1..519 17..535 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:48:44 Download gff for BS15053.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11103-PB 1..519 17..535 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:21:46 Download gff for BS15053.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11103-RB 190..716 10..536 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:19:09 Download gff for BS15053.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11103-RB 190..716 10..536 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:19:09 Download gff for BS15053.5prime
Subject Subject Range Query Range Percent Splice Strand
X 13782648..13783174 10..536 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:21:46 Download gff for BS15053.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13676681..13677207 10..536 99   Plus

BS15053.complete Sequence

551 bp assembled on 2006-11-01

GenBank Submission: FJ637862

> BS15053.complete
GAAGTTATCAGTCGACATGGGACCCTCCTCATCGTCATCTTCGGCATCTT
CCGCCTCGGGCGGAGCTGGAAACTCGGCCTTCTATCCACTGGGACCGAAT
GTGATGTGCTCGTTTCTGCCGCGCGACTTTCTCGATTGCAAGGATCCCGT
CGATCATCGGGAGAACGCCACGGCGCAGCAGGAAAAGAAATACGGATGCC
TGAAGTTCGGTGGTTCCACGTACGAAGAGGTGGAGCACGCCATGGTCTGG
TGCACCGTGTTTGCCGACATCGAGTGCTACGGTAATCGCACCTTTCTGCG
CGCCGGAGTGCCCTGTGTCCGCTACACGGATCACTACTTTGTGACCACAC
TGATCTACAGCATGCTGCTGGGTTTCCTCGGTATGGATCGCTTCTGTCTC
GGTCAAACGGGCACGGCTGTGGGCAAACTGCTTACCATGGGCGGCGTGGG
CGTTTGGTGGATCATCGACGTCATCCTCCTGATCACCAACAATTTGCTGC
CCGAGGACGGCAGCAATTGGAATCCCTATGTCTAGAAGCTTTCTAGACCA
T

BS15053.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:22:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG11103-RB 519 CG11103-PB 1..519 17..535 2595 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:22:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG11103-RB 923 CG11103-RB 196..716 16..536 2605 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:22:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13782654..13783174 16..536 2605 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:22:35 has no hits.

BS15053.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:16 Download gff for BS15053.complete
Subject Subject Range Query Range Percent Splice Strand
CG11103-RB 1..519 17..535 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:53:07 Download gff for BS15053.complete
Subject Subject Range Query Range Percent Splice Strand
CG11103-RB 137..662 8..536 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:13:26 Download gff for BS15053.complete
Subject Subject Range Query Range Percent Splice Strand
CG11103-RB 197..715 17..535 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:16 Download gff for BS15053.complete
Subject Subject Range Query Range Percent Splice Strand
CG11103-RB 137..662 8..536 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:09:22 Download gff for BS15053.complete
Subject Subject Range Query Range Percent Splice Strand
CG11103-RB 197..715 17..535 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:09:22 Download gff for BS15053.complete
Subject Subject Range Query Range Percent Splice Strand
X 13782655..13783173 17..535 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:13:26 Download gff for BS15053.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13676688..13677206 17..535 100   Plus

BS15053.pep Sequence

Translation from 16 to 534

> BS15053.pep
MGPSSSSSSASSASGGAGNSAFYPLGPNVMCSFLPRDFLDCKDPVDHREN
ATAQQEKKYGCLKFGGSTYEEVEHAMVWCTVFADIECYGNRTFLRAGVPC
VRYTDHYFVTTLIYSMLLGFLGMDRFCLGQTGTAVGKLLTMGGVGVWWII
DVILLITNNLLPEDGSNWNPYV*

BS15053.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:36:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG11103-PB 172 CG11103-PB 1..172 1..172 939 100 Plus
amx-PB 284 CG12127-PB 195..281 79..166 184 45.5 Plus
amx-PA 284 CG12127-PA 195..281 79..166 184 45.5 Plus
CG10795-PA 178 CG10795-PA 34..150 41..166 173 35.9 Plus