Clone Sequence Records
BS15055.3prime Sequence
801 bp (799 high quality bases) assembled on 2006-10-23
> BS15055.3prime
ATGGTCTAGAAAGCTTCTACCACCAGCTCTTGACCTTGTGCAGCACTGTC
TTGAAGACGGGCACCTTCACGGGAAACGGCTTGGGCACCTTGATGGGCAC
ATATTTGACCACATGATAGGGCACATGCTTCTCCACCGGTACTGGGATGT
GTTTCTCCACGGGCACAGGAATCAGTCGCTCCACTGGAACCTTTAATTCC
TTCTCCACCGGCACGTGAACATTCTTGGTGATCGGTATGTGAATGGGCAC
TGGCTTGCGAACCGGTATGATGACCGCATGCGATATGGGTATCTTCACCT
CCTTCTCCACCGGCACGTGCTGCTTCTTCACATGCTTCACCGGCACATAG
TTAATGATATCCACATGATGCGAGTGATGGGTGTGTCCCTGGCCATGACC
ACTTGCCTCCGACAAGTAGTTGGAGCTCTGCTCCTGCCCAGCATCGGGAT
GCTCCTCAAAGTCATCAGCACCAGATCCGCTCGAGGCAGATGAAGCCGAT
GATGCAGCGGATCCAGAAATGGATGGTTCATGGTGGCCGAAATACGAAGA
GTGCTGTTCCTGTTCCTGGCGCTGCTGCTGCTGCTGCTGCTGTTGGTGGT
ACAGTTGCTGCTGTTGCTGCTGCAGCTGCTGCAGATGCTGTTGCTGTTGC
TGCTGTTGTTGGTGTTGCAACTGCTGGTGGTAAAGCTGCCCCTGCTGGTC
ATCGTATCCAGAGTCCTGCATGTACGGCGGCAGGAAATTTCCCATTGAAA
TTTTATCGTACGCATAGGGATGAGCCGCCTGCTGTTCCGGCTGCTGCTCC
T
BS15055.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7031-PA | 1428 | CG7031-RA | 644..1428 | 801..17 | 3925 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:14:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7031-RC | 2594 | CG7031-RC | 706..1492 | 801..15 | 3935 | 100 | Minus |
CG7031-RB | 2597 | CG7031-RB | 709..1495 | 801..15 | 3935 | 100 | Minus |
CG7031-RA | 1796 | CG7031-RA | 709..1495 | 801..15 | 3935 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:14:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22805402..22806188 | 801..15 | 3935 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:14:30 has no hits.
BS15055.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:15:47 Download gff for
BS15055.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7031-PA | 644..1428 | 17..801 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:48:49 Download gff for
BS15055.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7031-PA | 644..1428 | 17..801 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:53:37 Download gff for
BS15055.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7031-RA | 709..1500 | 6..801 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:11:22 Download gff for
BS15055.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7031-RA | 709..1500 | 6..801 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:11:22 Download gff for
BS15055.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22805402..22806193 | 6..801 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:53:37 Download gff for
BS15055.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18631124..18631915 | 6..801 | 99 | | Minus |
BS15055.5prime Sequence
817 bp (762 high quality bases) assembled on 2006-10-23
> BS15055.5prime
GAAGTTATCCTTCGAGATGGCGAACGTTAATTTGCAGATGCCGCTGATTG
CAGCAGCCACCACCATACTGACAATTGTCAGTGCGGCCACCGCCAGCACC
ACATCCTCGACAGAGACGGCCAAGAACCAGCCATTGTATCACAATATGGG
GTCTTTGTTCGAGAATCGATGGCTGCCAATGGATCAGCCGATGCAGCATC
ATCCCAATCATCGGTATGGCTCGTCCAAAATTCCACGGGCAAATGCGGGT
GAAAGGAGGGCCTTTAGCAGCGGCCATTCCTCAGGCTCCCGGCAAGGATT
GGCCCATATGCTCAACGGACTAACAAATCTCTCGGGCCTGGGACACATTT
CCAATGGGTATGGCTCGGTGGCGCCCACCCATACGGAGGCACTGGCCCTG
GGCTCCACCAAACAGGAGATACCGATTTACGAGGACCACAATGAAGATGC
CACCGCGGTGGCTGCCGTTGCAGCAGCTGGAGCCCATGATTTTGGCTCGG
GAAATGAACAATCTGGCGGTGGATTGGAGAACAATCAAGAACATTCGCCG
ATTTACAATTATCCCGGTGCCGCACATAATGGTGGATTTTTGCCAGCCTA
CGGTTCAGCTGGATCTGGTCACGAGCAGGACTACGCACAGTGGTCATCAT
CGGCGCCGGAGGAGCAGCAGCCGGAACAGCAGGCGGCTCATCCCTATGCG
TACGATAAAATTTCAATGGGAAATTTCCTGCCGCCGTACATGCAGGACTC
TGGATACGATGACCAGCAAGGGCAGCTTTACCACCAGCAGTTGCAACACC
AACAACAGCAGCAACAG
BS15055.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7031-PA | 1428 | CG7031-RA | 1..801 | 17..817 | 3955 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:26:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7031-RB | 2597 | CG7031-RB | 66..866 | 17..817 | 3975 | 99.8 | Plus |
CG7031-RA | 1796 | CG7031-RA | 66..866 | 17..817 | 3975 | 99.8 | Plus |
CG7031-RC | 2594 | CG7031-RC | 66..863 | 17..817 | 3920 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:26:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22804776..22805559 | 34..817 | 3890 | 99.7 | Plus |
Blast to na_te.dros performed 2015-02-11 03:26:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6786 | 762..816 | 149 | 74.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6753..6807 | 762..816 | 149 | 74.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2300..2357 | 760..817 | 146 | 72.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6801..6856 | 762..817 | 145 | 73.2 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1080..1138 | 762..817 | 144 | 74.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2317..2378 | 756..817 | 139 | 69.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6765 | 773..816 | 139 | 79.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6768..6823 | 762..817 | 136 | 71.4 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1095..1146 | 765..816 | 134 | 73.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2365..2419 | 762..816 | 131 | 70.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2605..2659 | 762..816 | 131 | 70.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6769 | 772..817 | 131 | 76.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6807..6861 | 762..816 | 131 | 70.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1544..1587 | 772..815 | 130 | 77.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2487..2539 | 764..816 | 130 | 71.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1511..1570 | 757..816 | 129 | 68.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1528..1583 | 762..817 | 127 | 69.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6852..6907 | 762..817 | 127 | 69.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2764..2818 | 762..816 | 122 | 69.1 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1057..1093 | 781..817 | 122 | 81.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6835..6883 | 772..817 | 121 | 75.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2336 | 787..817 | 119 | 87.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6867..6918 | 765..816 | 116 | 69.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2317..2369 | 762..817 | 111 | 69.6 | Plus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 979..1011 | 780..812 | 111 | 81.8 | Plus |
BS15055.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:15:48 Download gff for
BS15055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7031-PA | 1..801 | 17..817 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:48:50 Download gff for
BS15055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7031-PA | 1..801 | 17..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:04:59 Download gff for
BS15055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7031-RA | 62..866 | 9..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:50:52 Download gff for
BS15055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7031-RA | 62..866 | 9..817 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:50:52 Download gff for
BS15055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22804777..22805559 | 35..817 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:04:59 Download gff for
BS15055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18630499..18631281 | 35..817 | 99 | | Plus |
BS15055.complete Sequence
1460 bp assembled on 2009-08-24
GenBank Submission: KX802996
> BS15055.complete
GAAGTTATCAGTCGACATGGCGAACGTTAATTTGCAGATGCCGCTGATTG
CAGCAGCCACCACCATACTGACAATTGTCAGTGGGGCCACCGCCAGCACC
ACATCCTCGACAGAGACGGCCAAGAACCAGCCATTGTATCACAATATGGG
GTCTTTGTTCGAGAATCGATGGCTGCCAATGGATCAGCCGATGCAGCATC
ATCCCAATCATCGGTATGGCTCGTCCAAAATTCCACGGGCAAATGCGGGT
GAAAGGAGGGCCTTTAGCAGCGGCCATTCCTCAGGCTCCCGGCAAGGATT
GGCCCATATGCTCAACGGACTAACAAATCTCTCGGGCCTGGGACACATTT
CCAATGGGTATGGCTCGGTGGCGCCCACCCATACGGAGGCACTGGCCCTG
GGCTCCACCAAACAGGAGATACCGATTTACGAGGACCACAATGAAGATGC
CACCGCGGTGGCTGCCGTTGCAGCAGCTGGAGCCCATGATTTTGGCTCGG
GAAATGAACAATCTGGCGGTGGATTGGAGAACAATCAAGAACATTCGCCG
ATTTACAATTATCCCGGTGCCGCACATAATGGTGGATTTTTGCCAGCCTA
CGGTTCAGCTGGATCTGGTCACGAGCAGGACTACGCACAGTGGTCATCAT
CGGCGCCGGAGGAGCAGCAGCCGGAACAGCAGGCGGCTCATCCCTATGCG
TACGATAAAATTTCAATGGGAAATTTCCTGCCGCCGTACATGCAGGACTC
TGGATACGATGACCAGCAGGGGCAGCTTTACCACCAGCAGTTGCAACACC
AACAACAGCAGCAACAGCAACAGCATCTGCAGCAGCTGCAGCAGCAACAG
CAGCAACTGTACCACCAACAGCAGCAGCAGCAGCAGCAGCGCCAGGAACA
GGAACAGCACTCTTCGTATTTCGGCCACCATGAACCATCCATTTCTGGAT
CCGCTGCATCATCGGCTTCATCTGCCTCGAGCGGATCTGGTGCTGATGAC
TTTGAGGAGCATCCCGATGCTGGGCAGGAGCAGAGCTCCAACTACTTGTC
GGAGGCAAGTGGTCATGGCCAGGGACACACCCATCACTCGCATCATGTGG
ATATCATTAACTATGTGCCGGTGAAGCATGTGAAGAAGCAGCACGTGCCG
GTGGAGAAGGAGGTGAAGATACCCATATCGCATGCGGTCATCATACCGGT
TCGCAAGCCAGTGCCCATTCACATACCGATCACCAAGAATGTTCACGTGC
CGGTGGAGAAGGAATTAAAGGTTCCAGTGGAGCGACTGATTCCTGTGCCC
GTGGAGAAACACATCCCAGTACCGGTGGAGAAGCATGTGCCCTATCATGT
GGTCAAATATGTGCCCATCAAGGTGCCCAAGCCGTTTCCCGTGAAGGTGC
CCGTCTTCAAGACAGTGCTGCACAAGGTCAAGAGCTGGTGGTAGAAGCTT
TCTAGACCAT
BS15055.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:36:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7031-RB | 1428 | CG7031-PB | 1..1428 | 17..1444 | 7140 | 100 | Plus |
CG7031-RA | 1428 | CG7031-PA | 1..1428 | 17..1444 | 7140 | 100 | Plus |
CG7031-RC | 1425 | CG7031-PC | 1..1425 | 17..1444 | 7060 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7031-RB | 2597 | CG7031-RB | 66..1495 | 17..1446 | 7150 | 100 | Plus |
CG7031-RA | 1796 | CG7031-RA | 66..1495 | 17..1446 | 7150 | 100 | Plus |
CG7031-RC | 2594 | CG7031-RC | 66..1492 | 17..1446 | 7070 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22804776..22806188 | 34..1446 | 7065 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:36:50 has no hits.
BS15055.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:43 Download gff for
BS15055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7031-RA | 66..1493 | 17..1444 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:52:44 Download gff for
BS15055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7031-RA | 66..1493 | 17..1444 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:52:44 Download gff for
BS15055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7031-RA | 66..1493 | 17..1444 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:52:44 Download gff for
BS15055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22804777..22806186 | 35..1444 | 100 | | Plus |
3R | 22804356..22804373 | 17..34 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:52:44 Download gff for
BS15055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18630078..18630095 | 17..34 | 100 | -> | Plus |
arm_3R | 18630499..18631908 | 35..1444 | 100 | | Plus |
BS15055.pep Sequence
Translation from 16 to 1443
> BS15055.pep
MANVNLQMPLIAAATTILTIVSGATASTTSSTETAKNQPLYHNMGSLFEN
RWLPMDQPMQHHPNHRYGSSKIPRANAGERRAFSSGHSSGSRQGLAHMLN
GLTNLSGLGHISNGYGSVAPTHTEALALGSTKQEIPIYEDHNEDATAVAA
VAAAGAHDFGSGNEQSGGGLENNQEHSPIYNYPGAAHNGGFLPAYGSAGS
GHEQDYAQWSSSAPEEQQPEQQAAHPYAYDKISMGNFLPPYMQDSGYDDQ
QGQLYHQQLQHQQQQQQQQHLQQLQQQQQQLYHQQQQQQQQRQEQEQHSS
YFGHHEPSISGSAASSASSASSGSGADDFEEHPDAGQEQSSNYLSEASGH
GQGHTHHSHHVDIINYVPVKHVKKQHVPVEKEVKIPISHAVIIPVRKPVP
IHIPITKNVHVPVEKELKVPVERLIPVPVEKHIPVPVEKHVPYHVVKYVP
IKVPKPFPVKVPVFKTVLHKVKSWW*
BS15055.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:36:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7031-PB | 475 | CG7031-PB | 1..475 | 1..475 | 2535 | 100 | Plus |
CG7031-PA | 475 | CG7031-PA | 1..475 | 1..475 | 2535 | 100 | Plus |
CG7031-PC | 474 | CG7031-PC | 1..474 | 1..475 | 2518 | 99.8 | Plus |
CG13840-PC | 466 | CG13840-PC | 29..447 | 54..470 | 336 | 27.5 | Plus |
CG33299-PC | 172 | CG33299-PC | 15..172 | 318..474 | 252 | 34.4 | Plus |