Clone BS15056 Report

Search the DGRC for BS15056

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:150
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptCG11668-RA
Protein status:BS15056.pep: full length peptide match
Sequenced Size:1229

Clone Sequence Records

BS15056.complete Sequence

1229 bp assembled on 2009-12-07

GenBank Submission: KX800514

> BS15056.complete
GAAGTTATCAGTCGACATGGGAAAGCTATCATTTGGATACAGATTGATTT
TAGAGTTCGTCTTAATTTCGACGTTAGCATATGCACAGAATGCGCCTTGG
AACGCAGTGGCTCCATCGTATCTATCGATTGACATATACGGAAATTGCCA
AGCCCACGATCGTCCGCTGATTGGTAAGTGTGTGCGGTACGTGGATTGCA
TTAGTGCCATGCAGGCAGTGCCCCGGGTGACACCACTACTCTGTCCGTCA
TCGTGGCCCAATCAGTTGGTTTGCTGTCCACACGGCGGATACTTGTTGCC
GCCGCCCAGCATCTCGAAGAGCGAACAAGCCTGTGCCAATGCCTATCCAA
GAGCTCATCACAAGCGCCGTCGACGCCGTCGGAATACGAACCCTAAACTG
GATCAAGTGGAACTAGTTGAGCCAATTATACAAAAGCACAATCAGAGCCA
GAATTTACTGGTGGGCGGCAGACTCACCCAGGAGAACGAGCATCCGTATA
TGTGCGCCCTCGGTTGGCCGTCCCGCACAAACAGATGGATTCATGAGCAC
GGTTCCAGCAAGCGCAGATACACGTTCAACTGTGGCTGCGCCATGATTGC
GCCTCGGTTCGCCATAACGGCAGCACACTGTGCCAGCGTCGGTGGGGAAT
CCCCGTCAGTGGCGTTGATTGGTGGCGTTGAGCTGAACAGCGGTCGCGGG
CAATTGATTGAGATCAAGCGAATTAGCCAGCATCCGCACTTCGATGCGGA
GACCCTTACCAATGACCTGGCGGTGGTCAAGTTGGCCAGAAGATCACACA
TGCCAGTGGCCTGCCTGTGGAACCAGGAATCCCTGCCCGAGAGACCGCTC
ACTGCCCTGGGCTATGGACAAACCAAGTTCGCTGGACCACACTCCAGTAA
TCTCCTGCAAATCATGCTTTACCACCTGAATTTCCAACAATGCCAGAGGT
ACTTGCACAACTATGACAAACTGGCCAATGGCCTGGGATCGGGTCAAATG
TGCGCGGGAGACTACTCCGGCAATATGGACACATGCCAGGGCGATTCTGG
AGGACCCTTGTTGCTCCACCAACACATGCGCCATCATCGCCATACGATAC
CCTATGTGGTGGGTATAACGTCCTTTGGAGGAGCCTGTGCATCCGGTCAA
CCTGGAGTTTATGTGCGAATAGCGCACTACATTCAATGGATAGAACAACA
AGTATGGCCTTGAAAGCTTTCTAGACCAT

BS15056.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:17:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG11668-RA 1197 CG11668-PA 1..1197 17..1213 5985 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:17:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG11668-RA 1349 CG11668-RA 35..1235 13..1213 5990 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:17:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13038527..13038777 79..329 1255 100 Plus
3R 32079331 3R 13039374..13039610 645..881 1185 100 Plus
3R 32079331 3R 13039894..13040070 1037..1213 885 100 Plus
3R 32079331 3R 13038825..13038999 328..502 875 100 Plus
3R 32079331 3R 13039675..13039834 881..1040 800 100 Plus
3R 32079331 3R 13039140..13039284 502..646 725 100 Plus
3R 32079331 3R 13038409..13038474 13..78 315 98.5 Plus
Blast to na_te.dros performed on 2014-11-27 10:17:58 has no hits.

BS15056.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:49:23 Download gff for BS15056.complete
Subject Subject Range Query Range Percent Splice Strand
CG11668-RA 1..1196 17..1212 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:17:24 Download gff for BS15056.complete
Subject Subject Range Query Range Percent Splice Strand
CG11668-RA 39..1234 17..1212 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:06:56 Download gff for BS15056.complete
Subject Subject Range Query Range Percent Splice Strand
CG11668-RA 1..1196 17..1212 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:18:12 Download gff for BS15056.complete
Subject Subject Range Query Range Percent Splice Strand
CG11668-RA 39..1234 17..1212 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:18:12 Download gff for BS15056.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13038413..13038474 17..78 100 -> Plus
3R 13038527..13038777 79..329 100 -> Plus
3R 13038827..13038999 330..502 100 -> Plus
3R 13039141..13039283 503..645 100 -> Plus
3R 13039375..13039610 646..881 100 -> Plus
3R 13039676..13039833 882..1039 100 -> Plus
3R 13039897..13040069 1040..1212 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:17:24 Download gff for BS15056.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8864135..8864196 17..78 100 -> Plus
arm_3R 8864549..8864721 330..502 100 -> Plus
arm_3R 8864863..8865005 503..645 100 -> Plus
arm_3R 8864249..8864499 79..329 100 -> Plus
arm_3R 8865097..8865332 646..881 100 -> Plus
arm_3R 8865398..8865555 882..1039 100 -> Plus
arm_3R 8865619..8865791 1040..1212 100   Plus

BS15056.3prime Sequence

834 bp (814 high quality bases) assembled on 2006-10-23

> BS15056.3prime
ATGGTCTAGAAAGCTTTCAAGGCCATACTTGTTGTTCTATCCATTGAATG
TAGTGCGCTATTCGCACATAAACTCCAGGTTGACCGGATGCACAGGCTCC
TCCAAAGGACGTTATACCCACCACATAGGGTATCGTATGGCGATGATGGC
GCATGTGTTGGTGGAGCAACAAGGGTCCTCCAGAATCGCCCTGGCATGTG
TCCATATTGCCGGAGTAGTCTCCCGCGCACATTTGACCCGATCCCAGGCC
ATTGGCCAGTTTGTCATAGTTGTGCAAGTACCTCTGGCATTGTTGGAAAT
TCAGGTGGTAAAGCATGATTTGCAGGAGATTACTGGAGTGTGGTCCAGCG
AACTTGGTTTGTCCATAGCCCAGGGCAGTGAGCGGTCTCTCGGGCAGGGA
TTCCTGGTTCCACAGGCAGGCCACTGGCATGTGTGATCTTCTGGCCAACT
TGACCACCGCCAGGTCATTGGTAAGGGTCTCCGCATCGAAGTGCGGATGC
TGGCTAATTCGCTTGATCTCAATCAATTGCCCGCGACCGCTGTTCAGCTC
AACGCCACCAATCAACGCCACTGACGGGGATTCCCCACCGACGCTGGCAC
AGTGTGCTGCCGTTATGGCGAACCGAGGCGCAATCATGGCGCAGCCACAG
TTGAACGTGTATCTGCGCTTGCTGGAACCGTGCTCATGAATCCATCTGTT
TGTGCGGGACGGCCAACCGAGGGCGCACATATACGGATGCTCGTTCTCCT
GGGTGAGTCTGCCGCCCACCAGTAAATTCTGGCTCTGATTGTGCTTTTGT
ATAATTGGCTCAACTAGTTCCACTTGATCCAGTT

BS15056.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG11668-PA 1197 CG11668-RA 380..1197 834..17 4090 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:04:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG11668-RA 1349 CG11668-RA 418..1235 834..17 4090 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:04:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13039374..13039610 585..349 1185 100 Minus
3R 32079331 3R 13039894..13040070 193..17 885 100 Minus
3R 32079331 3R 13039675..13039834 349..190 800 100 Minus
3R 32079331 3R 13039140..13039284 728..584 725 100 Minus
3R 32079331 3R 13038893..13038999 834..728 535 100 Minus
Blast to na_te.dros performed on 2015-02-13 00:04:13 has no hits.

BS15056.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:15:49 Download gff for BS15056.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11668-PA 380..1197 17..834 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:48:52 Download gff for BS15056.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11668-PA 380..1197 17..834 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:22:23 Download gff for BS15056.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11668-RA 418..1244 5..834 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:33:56 Download gff for BS15056.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11668-RA 418..1244 5..834 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:33:56 Download gff for BS15056.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13039141..13039283 585..727 100 -> Minus
3R 13039375..13039610 349..584 100 -> Minus
3R 13039676..13039833 191..348 100 -> Minus
3R 13039897..13040079 5..190 97   Minus
3R 13038893..13038999 728..834 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:22:23 Download gff for BS15056.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8864615..8864721 728..834 100 -> Minus
arm_3R 8864863..8865005 585..727 100 -> Minus
arm_3R 8865097..8865332 349..584 100 -> Minus
arm_3R 8865398..8865555 191..348 100 -> Minus
arm_3R 8865619..8865801 5..190 97   Minus

BS15056.5prime Sequence

862 bp (765 high quality bases) assembled on 2006-10-23

> BS15056.5prime
GAAGTTATCCTTCGACATGGGAAAGCTATCATTTGGATACAGATTGATTT
TAGAGTTCGTCTTAATTTCGACGTTAGCATATGCACAGAATGCGCCTTGG
AACGCAGTGGCTCCATCGTATCTATCGATTGACATATACGGAAATTGCCA
AGCCCACGATCGTCCGCTGATTGGTAAGTGTGTGCGGTACGTGGATTGCA
TTAGTGCCATGCAGGCAGTGCCCCGGGTGACACCACTACTCTGTCCGTCA
TCGTGGCCCAATCAGTTGGTTTGCTGTCCACACGGCGGATACTTGTTGCC
GCCGCCCAGCATCTCGAAGAGCGAACAAGCCTGTGCCAATGCCTATCCAA
GAGCTCATCACAAGCGCCGTCGACGCCGTCGGAATACGAACCCTAAACTG
GATCAAGTGGAACTAGTTGAGCCAATTATACAAAAGCACAATCAGAGCCA
GAATTTACTGGTGGGCGGCAGACTCACCCAGGAGAACGAGCATCCGTATA
TGTGCGCCCTCGGTTGGCCGTCCCGCACAAACAGATGGATTCATGAGCAC
GGTTCCAGCAAGCGCAGATACACGTTCAACTGTGGCTGCGCCATGATTGC
GCCTCGGTTCGCCATAACGGCAGCACACTGTGCCAGCGTCGGTGGGGAAT
CCCCGTCAGTGGCGTTGATTGGTGGCGTTGAGCTGAACAGCGGTCGCGGG
CAATTGATTGAGATCAAGCGAATTAGCCAGCATCCGCACTTCGATGCGGA
GACCCTTACCAATGACCTGGCGGTGGTCAAGTTGGCCAGAAGATCACACA
TGCCAGTGGCCTGCCTGTGGAACCAGGAATCCCTGCCCGAGAGACCGCTC
ACTGCCCTGGGC

BS15056.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG11668-PA 1197 CG11668-RA 1..846 17..862 4230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:13:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG11668-RA 1349 CG11668-RA 35..884 13..862 4235 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:13:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13038527..13038777 79..329 1255 100 Plus
3R 32079331 3R 13039374..13039591 645..862 1090 100 Plus
3R 32079331 3R 13038825..13038999 328..502 875 100 Plus
3R 32079331 3R 13039140..13039284 502..646 725 100 Plus
3R 32079331 3R 13038409..13038474 13..78 315 98.5 Plus
Blast to na_te.dros performed on 2015-02-10 22:13:25 has no hits.

BS15056.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:15:50 Download gff for BS15056.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11668-PA 1..846 17..862 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:48:53 Download gff for BS15056.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11668-PA 1..846 17..862 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:20:03 Download gff for BS15056.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11668-RA 35..884 13..862 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:04:35 Download gff for BS15056.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11668-RA 35..884 13..862 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:04:35 Download gff for BS15056.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13039375..13039591 646..862 100   Plus
3R 13038409..13038474 13..78 98 -> Plus
3R 13038527..13038777 79..329 100 -> Plus
3R 13038827..13038999 330..502 100 -> Plus
3R 13039141..13039283 503..645 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:20:03 Download gff for BS15056.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8864131..8864196 13..78 98 -> Plus
arm_3R 8864249..8864499 79..329 100 -> Plus
arm_3R 8864549..8864721 330..502 100 -> Plus
arm_3R 8864863..8865005 503..645 100 -> Plus
arm_3R 8865097..8865313 646..862 100   Plus

BS15056.pep Sequence

Translation from 16 to 1212

> BS15056.pep
MGKLSFGYRLILEFVLISTLAYAQNAPWNAVAPSYLSIDIYGNCQAHDRP
LIGKCVRYVDCISAMQAVPRVTPLLCPSSWPNQLVCCPHGGYLLPPPSIS
KSEQACANAYPRAHHKRRRRRRNTNPKLDQVELVEPIIQKHNQSQNLLVG
GRLTQENEHPYMCALGWPSRTNRWIHEHGSSKRRYTFNCGCAMIAPRFAI
TAAHCASVGGESPSVALIGGVELNSGRGQLIEIKRISQHPHFDAETLTND
LAVVKLARRSHMPVACLWNQESLPERPLTALGYGQTKFAGPHSSNLLQIM
LYHLNFQQCQRYLHNYDKLANGLGSGQMCAGDYSGNMDTCQGDSGGPLLL
HQHMRHHRHTIPYVVGITSFGGACASGQPGVYVRIAHYIQWIEQQVWP*

BS15056.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:03:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG11668-PA 398 CG11668-PA 1..398 1..398 2178 100 Plus
spirit-PD 393 CG2056-PD 12..367 9..398 572 35.8 Plus
spirit-PC 393 CG2056-PC 12..367 9..398 572 35.8 Plus
spirit-PA 393 CG2056-PA 12..367 9..398 572 35.8 Plus
spirit-PB 393 CG2056-PB 12..367 9..398 572 35.8 Plus