Clone Sequence Records
BS15056.complete Sequence
1229 bp assembled on 2009-12-07
GenBank Submission: KX800514
> BS15056.complete
GAAGTTATCAGTCGACATGGGAAAGCTATCATTTGGATACAGATTGATTT
TAGAGTTCGTCTTAATTTCGACGTTAGCATATGCACAGAATGCGCCTTGG
AACGCAGTGGCTCCATCGTATCTATCGATTGACATATACGGAAATTGCCA
AGCCCACGATCGTCCGCTGATTGGTAAGTGTGTGCGGTACGTGGATTGCA
TTAGTGCCATGCAGGCAGTGCCCCGGGTGACACCACTACTCTGTCCGTCA
TCGTGGCCCAATCAGTTGGTTTGCTGTCCACACGGCGGATACTTGTTGCC
GCCGCCCAGCATCTCGAAGAGCGAACAAGCCTGTGCCAATGCCTATCCAA
GAGCTCATCACAAGCGCCGTCGACGCCGTCGGAATACGAACCCTAAACTG
GATCAAGTGGAACTAGTTGAGCCAATTATACAAAAGCACAATCAGAGCCA
GAATTTACTGGTGGGCGGCAGACTCACCCAGGAGAACGAGCATCCGTATA
TGTGCGCCCTCGGTTGGCCGTCCCGCACAAACAGATGGATTCATGAGCAC
GGTTCCAGCAAGCGCAGATACACGTTCAACTGTGGCTGCGCCATGATTGC
GCCTCGGTTCGCCATAACGGCAGCACACTGTGCCAGCGTCGGTGGGGAAT
CCCCGTCAGTGGCGTTGATTGGTGGCGTTGAGCTGAACAGCGGTCGCGGG
CAATTGATTGAGATCAAGCGAATTAGCCAGCATCCGCACTTCGATGCGGA
GACCCTTACCAATGACCTGGCGGTGGTCAAGTTGGCCAGAAGATCACACA
TGCCAGTGGCCTGCCTGTGGAACCAGGAATCCCTGCCCGAGAGACCGCTC
ACTGCCCTGGGCTATGGACAAACCAAGTTCGCTGGACCACACTCCAGTAA
TCTCCTGCAAATCATGCTTTACCACCTGAATTTCCAACAATGCCAGAGGT
ACTTGCACAACTATGACAAACTGGCCAATGGCCTGGGATCGGGTCAAATG
TGCGCGGGAGACTACTCCGGCAATATGGACACATGCCAGGGCGATTCTGG
AGGACCCTTGTTGCTCCACCAACACATGCGCCATCATCGCCATACGATAC
CCTATGTGGTGGGTATAACGTCCTTTGGAGGAGCCTGTGCATCCGGTCAA
CCTGGAGTTTATGTGCGAATAGCGCACTACATTCAATGGATAGAACAACA
AGTATGGCCTTGAAAGCTTTCTAGACCAT
BS15056.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:17:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11668-RA | 1197 | CG11668-PA | 1..1197 | 17..1213 | 5985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:17:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11668-RA | 1349 | CG11668-RA | 35..1235 | 13..1213 | 5990 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:17:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13038527..13038777 | 79..329 | 1255 | 100 | Plus |
3R | 32079331 | 3R | 13039374..13039610 | 645..881 | 1185 | 100 | Plus |
3R | 32079331 | 3R | 13039894..13040070 | 1037..1213 | 885 | 100 | Plus |
3R | 32079331 | 3R | 13038825..13038999 | 328..502 | 875 | 100 | Plus |
3R | 32079331 | 3R | 13039675..13039834 | 881..1040 | 800 | 100 | Plus |
3R | 32079331 | 3R | 13039140..13039284 | 502..646 | 725 | 100 | Plus |
3R | 32079331 | 3R | 13038409..13038474 | 13..78 | 315 | 98.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:17:58 has no hits.
BS15056.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:49:23 Download gff for
BS15056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11668-RA | 1..1196 | 17..1212 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:17:24 Download gff for
BS15056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11668-RA | 39..1234 | 17..1212 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:06:56 Download gff for
BS15056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11668-RA | 1..1196 | 17..1212 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:18:12 Download gff for
BS15056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11668-RA | 39..1234 | 17..1212 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:18:12 Download gff for
BS15056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13038413..13038474 | 17..78 | 100 | -> | Plus |
3R | 13038527..13038777 | 79..329 | 100 | -> | Plus |
3R | 13038827..13038999 | 330..502 | 100 | -> | Plus |
3R | 13039141..13039283 | 503..645 | 100 | -> | Plus |
3R | 13039375..13039610 | 646..881 | 100 | -> | Plus |
3R | 13039676..13039833 | 882..1039 | 100 | -> | Plus |
3R | 13039897..13040069 | 1040..1212 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:17:24 Download gff for
BS15056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8864135..8864196 | 17..78 | 100 | -> | Plus |
arm_3R | 8864549..8864721 | 330..502 | 100 | -> | Plus |
arm_3R | 8864863..8865005 | 503..645 | 100 | -> | Plus |
arm_3R | 8864249..8864499 | 79..329 | 100 | -> | Plus |
arm_3R | 8865097..8865332 | 646..881 | 100 | -> | Plus |
arm_3R | 8865398..8865555 | 882..1039 | 100 | -> | Plus |
arm_3R | 8865619..8865791 | 1040..1212 | 100 | | Plus |
BS15056.3prime Sequence
834 bp (814 high quality bases) assembled on 2006-10-23
> BS15056.3prime
ATGGTCTAGAAAGCTTTCAAGGCCATACTTGTTGTTCTATCCATTGAATG
TAGTGCGCTATTCGCACATAAACTCCAGGTTGACCGGATGCACAGGCTCC
TCCAAAGGACGTTATACCCACCACATAGGGTATCGTATGGCGATGATGGC
GCATGTGTTGGTGGAGCAACAAGGGTCCTCCAGAATCGCCCTGGCATGTG
TCCATATTGCCGGAGTAGTCTCCCGCGCACATTTGACCCGATCCCAGGCC
ATTGGCCAGTTTGTCATAGTTGTGCAAGTACCTCTGGCATTGTTGGAAAT
TCAGGTGGTAAAGCATGATTTGCAGGAGATTACTGGAGTGTGGTCCAGCG
AACTTGGTTTGTCCATAGCCCAGGGCAGTGAGCGGTCTCTCGGGCAGGGA
TTCCTGGTTCCACAGGCAGGCCACTGGCATGTGTGATCTTCTGGCCAACT
TGACCACCGCCAGGTCATTGGTAAGGGTCTCCGCATCGAAGTGCGGATGC
TGGCTAATTCGCTTGATCTCAATCAATTGCCCGCGACCGCTGTTCAGCTC
AACGCCACCAATCAACGCCACTGACGGGGATTCCCCACCGACGCTGGCAC
AGTGTGCTGCCGTTATGGCGAACCGAGGCGCAATCATGGCGCAGCCACAG
TTGAACGTGTATCTGCGCTTGCTGGAACCGTGCTCATGAATCCATCTGTT
TGTGCGGGACGGCCAACCGAGGGCGCACATATACGGATGCTCGTTCTCCT
GGGTGAGTCTGCCGCCCACCAGTAAATTCTGGCTCTGATTGTGCTTTTGT
ATAATTGGCTCAACTAGTTCCACTTGATCCAGTT
BS15056.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11668-PA | 1197 | CG11668-RA | 380..1197 | 834..17 | 4090 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:04:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11668-RA | 1349 | CG11668-RA | 418..1235 | 834..17 | 4090 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:04:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13039374..13039610 | 585..349 | 1185 | 100 | Minus |
3R | 32079331 | 3R | 13039894..13040070 | 193..17 | 885 | 100 | Minus |
3R | 32079331 | 3R | 13039675..13039834 | 349..190 | 800 | 100 | Minus |
3R | 32079331 | 3R | 13039140..13039284 | 728..584 | 725 | 100 | Minus |
3R | 32079331 | 3R | 13038893..13038999 | 834..728 | 535 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:04:13 has no hits.
BS15056.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:15:49 Download gff for
BS15056.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11668-PA | 380..1197 | 17..834 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:48:52 Download gff for
BS15056.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11668-PA | 380..1197 | 17..834 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:22:23 Download gff for
BS15056.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11668-RA | 418..1244 | 5..834 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:33:56 Download gff for
BS15056.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11668-RA | 418..1244 | 5..834 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:33:56 Download gff for
BS15056.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13039141..13039283 | 585..727 | 100 | -> | Minus |
3R | 13039375..13039610 | 349..584 | 100 | -> | Minus |
3R | 13039676..13039833 | 191..348 | 100 | -> | Minus |
3R | 13039897..13040079 | 5..190 | 97 | | Minus |
3R | 13038893..13038999 | 728..834 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:22:23 Download gff for
BS15056.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8864615..8864721 | 728..834 | 100 | -> | Minus |
arm_3R | 8864863..8865005 | 585..727 | 100 | -> | Minus |
arm_3R | 8865097..8865332 | 349..584 | 100 | -> | Minus |
arm_3R | 8865398..8865555 | 191..348 | 100 | -> | Minus |
arm_3R | 8865619..8865801 | 5..190 | 97 | | Minus |
BS15056.5prime Sequence
862 bp (765 high quality bases) assembled on 2006-10-23
> BS15056.5prime
GAAGTTATCCTTCGACATGGGAAAGCTATCATTTGGATACAGATTGATTT
TAGAGTTCGTCTTAATTTCGACGTTAGCATATGCACAGAATGCGCCTTGG
AACGCAGTGGCTCCATCGTATCTATCGATTGACATATACGGAAATTGCCA
AGCCCACGATCGTCCGCTGATTGGTAAGTGTGTGCGGTACGTGGATTGCA
TTAGTGCCATGCAGGCAGTGCCCCGGGTGACACCACTACTCTGTCCGTCA
TCGTGGCCCAATCAGTTGGTTTGCTGTCCACACGGCGGATACTTGTTGCC
GCCGCCCAGCATCTCGAAGAGCGAACAAGCCTGTGCCAATGCCTATCCAA
GAGCTCATCACAAGCGCCGTCGACGCCGTCGGAATACGAACCCTAAACTG
GATCAAGTGGAACTAGTTGAGCCAATTATACAAAAGCACAATCAGAGCCA
GAATTTACTGGTGGGCGGCAGACTCACCCAGGAGAACGAGCATCCGTATA
TGTGCGCCCTCGGTTGGCCGTCCCGCACAAACAGATGGATTCATGAGCAC
GGTTCCAGCAAGCGCAGATACACGTTCAACTGTGGCTGCGCCATGATTGC
GCCTCGGTTCGCCATAACGGCAGCACACTGTGCCAGCGTCGGTGGGGAAT
CCCCGTCAGTGGCGTTGATTGGTGGCGTTGAGCTGAACAGCGGTCGCGGG
CAATTGATTGAGATCAAGCGAATTAGCCAGCATCCGCACTTCGATGCGGA
GACCCTTACCAATGACCTGGCGGTGGTCAAGTTGGCCAGAAGATCACACA
TGCCAGTGGCCTGCCTGTGGAACCAGGAATCCCTGCCCGAGAGACCGCTC
ACTGCCCTGGGC
BS15056.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11668-PA | 1197 | CG11668-RA | 1..846 | 17..862 | 4230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:13:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11668-RA | 1349 | CG11668-RA | 35..884 | 13..862 | 4235 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:13:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13038527..13038777 | 79..329 | 1255 | 100 | Plus |
3R | 32079331 | 3R | 13039374..13039591 | 645..862 | 1090 | 100 | Plus |
3R | 32079331 | 3R | 13038825..13038999 | 328..502 | 875 | 100 | Plus |
3R | 32079331 | 3R | 13039140..13039284 | 502..646 | 725 | 100 | Plus |
3R | 32079331 | 3R | 13038409..13038474 | 13..78 | 315 | 98.5 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:13:25 has no hits.
BS15056.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:15:50 Download gff for
BS15056.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11668-PA | 1..846 | 17..862 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:48:53 Download gff for
BS15056.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11668-PA | 1..846 | 17..862 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:20:03 Download gff for
BS15056.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11668-RA | 35..884 | 13..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:04:35 Download gff for
BS15056.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11668-RA | 35..884 | 13..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:04:35 Download gff for
BS15056.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13039375..13039591 | 646..862 | 100 | | Plus |
3R | 13038409..13038474 | 13..78 | 98 | -> | Plus |
3R | 13038527..13038777 | 79..329 | 100 | -> | Plus |
3R | 13038827..13038999 | 330..502 | 100 | -> | Plus |
3R | 13039141..13039283 | 503..645 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:20:03 Download gff for
BS15056.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8864131..8864196 | 13..78 | 98 | -> | Plus |
arm_3R | 8864249..8864499 | 79..329 | 100 | -> | Plus |
arm_3R | 8864549..8864721 | 330..502 | 100 | -> | Plus |
arm_3R | 8864863..8865005 | 503..645 | 100 | -> | Plus |
arm_3R | 8865097..8865313 | 646..862 | 100 | | Plus |
BS15056.pep Sequence
Translation from 16 to 1212
> BS15056.pep
MGKLSFGYRLILEFVLISTLAYAQNAPWNAVAPSYLSIDIYGNCQAHDRP
LIGKCVRYVDCISAMQAVPRVTPLLCPSSWPNQLVCCPHGGYLLPPPSIS
KSEQACANAYPRAHHKRRRRRRNTNPKLDQVELVEPIIQKHNQSQNLLVG
GRLTQENEHPYMCALGWPSRTNRWIHEHGSSKRRYTFNCGCAMIAPRFAI
TAAHCASVGGESPSVALIGGVELNSGRGQLIEIKRISQHPHFDAETLTND
LAVVKLARRSHMPVACLWNQESLPERPLTALGYGQTKFAGPHSSNLLQIM
LYHLNFQQCQRYLHNYDKLANGLGSGQMCAGDYSGNMDTCQGDSGGPLLL
HQHMRHHRHTIPYVVGITSFGGACASGQPGVYVRIAHYIQWIEQQVWP*
BS15056.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:03:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11668-PA | 398 | CG11668-PA | 1..398 | 1..398 | 2178 | 100 | Plus |
spirit-PD | 393 | CG2056-PD | 12..367 | 9..398 | 572 | 35.8 | Plus |
spirit-PC | 393 | CG2056-PC | 12..367 | 9..398 | 572 | 35.8 | Plus |
spirit-PA | 393 | CG2056-PA | 12..367 | 9..398 | 572 | 35.8 | Plus |
spirit-PB | 393 | CG2056-PB | 12..367 | 9..398 | 572 | 35.8 | Plus |