Clone Sequence Records
BS15058.3prime Sequence
907 bp (842 high quality bases) assembled on 2006-10-23
> BS15058.3prime
ATGGTCTAGAAAGCTTTCAGTCTTGAGCTGCACTGGCATCGTCATCGAAA
GCATCCGCCTCCACCTGTTCACCCTGGAAATCGCCCAAAATTCCCAGGCG
TCGTACCGCCTGCAAATTCTGGATGCAGTAGTCCACATTGGTCACTATGC
ACAGGGGTCGTTCGCCCTTGTAGTAGCCCGTGTTATCGCGCAGATAGACC
ACATCCCTGGTGGCCAGCCAGTGTTGCAGCTTCACGAAGCAAGGACACTG
CCAGGGATTACCCTCGATGGCCACGCGCTTAAGGTTCGGGAAGCTCACAT
TCACCTTGGCCAGAAAGGTAAGGCGATTGTTGTCCACTAGGATCTCCTGT
ACGCTACTCAGGCTCTCCAGCACATCGAGGTTGATCTCCTCCAGCAGATT
GTGACCCAAGTGGAGCTTCTGAAGACGCCGCATTGGTGCAAACATGCGCA
CGTCCAAGGATTTCAGTTCGTTGTGACCCAGTTTTAGGTATTCCAAAAAT
GGTAACGATGAGAAAGCCAGTGGATGCAGATGCTTCATACGATTGCCATT
CAGGTTGAGCCTTCGCATGCGCGGCAAGGTGTTGCCTCCGAAGATCTGTT
CCTCCAGGAATTCCAAGTTATTGTACGACAGATCCAAGGTGTCCAGGTTC
AGCAGGGCGGCAAAGGTGGCCGGTTTGATTTCCAATATAGCATTGTACTG
CAGATACAGCTTCCGTAGTGAGCCCAAGCCCACAAAGTGAGCAGGACTGA
GGCTGGCGATGCTGTTCCTGGACACATCCAGCATCTGCAGTCTGGCCAAC
ACTCTGAACTGGTTGTCGAACAGCAGGCGGATGCGATTGCCGGACAAATC
CAGCTGCTGTAGATGCAACACAAAGTTCTGAACCGCTCAAAACACATTTG
GACGCAG
BS15058.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6749-PA | 1659 | CG6749-RA | 769..1659 | 907..17 | 4430 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:29:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6749-RA | 1834 | CG6749-RA | 774..1664 | 907..17 | 4440 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:28:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9731408..9732298 | 17..907 | 4440 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:28:55 has no hits.
BS15058.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:15:53 Download gff for
BS15058.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6749-PA | 769..1659 | 17..907 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:48:57 Download gff for
BS15058.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6749-PA | 769..1659 | 17..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:29:08 Download gff for
BS15058.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6749-RA | 774..1669 | 12..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:21:08 Download gff for
BS15058.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6749-RA | 774..1669 | 12..907 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:21:08 Download gff for
BS15058.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9731403..9732298 | 12..907 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:29:08 Download gff for
BS15058.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9724503..9725398 | 12..907 | 99 | | Plus |
BS15058.5prime Sequence
874 bp (761 high quality bases) assembled on 2006-10-23
> BS15058.5prime
GAAGTTATCAGTCGACATGTCGCAGACTGCCAACTGGGTTCTGCCGCTTT
TGCTGTGGCTTCTCTGCATGGGATTCCCCATTCTGCATGGCGCCGATCTC
TGCCAGCCCATCGGATGGCGGAACTTCCAGTGCAGCGAGGTCGCTTCTCT
GCAGGATCTGGTGGACTTGGGCGCCGAAAACTGGCACACGCTCGCCATAC
GGAATGTGCAAACGGAACTGGAGGTGGGATCAGGCGAAAATGCCGATCAC
TTGGCCAACTTGCTAGACTTGGATCTGACTGGCGCGGCTCCAATAAATGT
GCATACCAACGGATTTTCCATTCTGCCCAATCTGCGGCAACTGAATCTCA
GTGGCTGCGGTCTCGTTGACATCCGGGGAAATCACTTTGCGCCTGAGTCA
GCGCTCCAGCGGATCGATTTTAGTCACAATCAAATGGAGCTTCTGGATCG
CGACTTTTTTGGCAATCTAAGGAAATTGATCTATGCGAATTTTTCGCACA
ATGCTCTAAAGCAATGCGATCTGCCGCACATGCCACTGCTAAATCGACTG
GAATTGGGGCACAATCGATTGGTGAATGCCACCTTCGGAGTTTGTCCACA
GCTGCAGGAGTTGATTTTGAATGACAATCAACTGATACAGTTGGACGTGA
ATGCCTTTCGTGGACTCCATGGTCTGTTGGAGCTGCAGCTAAGCGGGAAT
AGATTGAGCTCCATTGGCCTGGAAACCTTTCAGCCGCTCGCCCAGCTGCG
AAAGTTGAACCTTTCCCAAAACGCCCTCGATGCACTGCGTCCAAATGTGT
TTGGAGCGGTTCAGAACTTTGTGTTGCATCTACAGCAGCTGGATTTGTCC
GGCAATCGCATCCGCCTGCTGTTC
BS15058.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6749-PA | 1659 | CG6749-RA | 1..858 | 17..874 | 4290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:01:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6749-RA | 1834 | CG6749-RA | 6..863 | 17..874 | 4290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:00:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9732938..9733346 | 640..232 | 2045 | 100 | Minus |
3L | 28110227 | 3L | 9732209..9732444 | 874..639 | 1180 | 100 | Minus |
3L | 28110227 | 3L | 9733585..9733802 | 234..17 | 1090 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:01:03 has no hits.
BS15058.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:15:54 Download gff for
BS15058.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6749-PA | 1..858 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:48:58 Download gff for
BS15058.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6749-PA | 1..858 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:34:58 Download gff for
BS15058.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6749-RA | 1..863 | 13..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:32:42 Download gff for
BS15058.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6749-RA | 1..863 | 13..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:32:42 Download gff for
BS15058.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9732209..9732442 | 641..874 | 100 | <- | Minus |
3L | 9732938..9733344 | 234..640 | 100 | <- | Minus |
3L | 9733586..9733807 | 9..233 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:34:58 Download gff for
BS15058.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9725309..9725542 | 641..874 | 100 | <- | Minus |
arm_3L | 9726038..9726444 | 234..640 | 100 | <- | Minus |
arm_3L | 9726686..9726907 | 9..233 | 98 | | Minus |
BS15058.complete Sequence
1691 bp assembled on 2006-11-01
GenBank Submission: FJ637863
> BS15058.complete
GAAGTTATCAGTCGACATGTCGCAGACTGCCAACTGGGTTCTGCCGCTTT
TGCTGTGGCTTCTCTGCATGGGATTCCCCATTCTGCATGGCGCCGATCTC
TGCCAGCCCATCGGATGGCGGAACTTCCAGTGCAGCGAGGTCGCTTCTCT
GCAGGATCTGGTGGACTTGGGCGCCGAAAACTGGCACACGCTCGCCATAC
GGAATGTGCAAACGGAACTGGAGGTGGGATCAGGCGAAAATGCCGATCAC
TTGGCCAACTTGCTAGACTTGGATCTGACTGGCGCGGCTCCAATAAATGT
GCATACCAACGGATTTTCCATTCTGCCCAATCTGCGGCAACTGAATCTCA
GTGGCTGCGGTCTCGTTGACATCCGGGGAAATCACTTTGCGCCTGAGTCA
GCGCTCCAGCGGATCGATTTTAGTCACAATCAAATGGAGCTTCTGGATCG
CGACTTTTTTGGCAATCTAAGGAAATTGATCTATGCGAATTTTTCGCACA
ATGCTCTAAAGCAATGCGATCTGCCGCACATGCCACTGCTAAATCGACTG
GAATTGGGGCACAATCGATTGGTGAATGCCACCTTCGGAGTTTGTCCACA
GCTGCAGGAGTTGATTTTGAATGACAATCAACTGATACAGTTGGACGTGA
ATGCCTTTCGTGGACTCCATGGTCTGTTGGAGCTGCAGCTAAGCGGGAAT
AGATTGAGCTCCATTGGCCTGGAAACCTTTCAGCCGCTCGCCCAGCTGCG
AAAGTTGAACCTTTCCCAAAACGCCCTCGATGCACTGCGTCCAAATGTGT
TTGGAGCGGTTCAGAACTTTGTGTTGCATCTACAGCAGCTGGATTTGTCC
GGCAATCGCATCCGCCTGCTGTTCGACAACCAGTTCAGAGTGTTGGCCAG
ACTGCAGATGCTGGATGTGTCCAGGAACAGCATCGCCAGCCTCAGTCCTG
CTCACTTTGTGGGCTTGGGCTCACTACGGAAGCTGTATCTGCAGTACAAT
GCTATATTGGAAATCAAACCGGCCACCTTTGCCGCCCTGCTGAACCTGGA
CACCTTGGATCTGTCGTACAATAACTTGGAATTCCTGGAGGAACAGATCT
TCGGAGGCAACACCTTGCCGCGCATGCGAAGGCTCAACCTGAATGGCAAT
CGTATGAAGCATCTGCATCCACTGGCTTTCTCATCGTTACCATTTTTGGA
ATACCTAAAACTGGGTCACAACGAACTGAAATCCTTGGACGTGCGCATGT
TTGCACCAATGCGGCGTCTTCAGAAGCTCCACTTGGGTCACAATCTGCTG
GAGGAGATCAACCTCGATGTGCTGGAGAGCCTGAGTAGCGTACAGGAGAT
CCTAGTGGACAACAATCGCCTTACCTTTCTGGCCAAGGTGAATGTGAGCT
TCCCGAACCTTAAGCGCGTGGCCATCGAGGGTAATCCCTGGCAGTGTCCT
TGCTTCGTGAAGCTGCAACACTGGCTGGCCACCAGGGATGTGGTCTATCT
GCGCGATAACACGGGCTACTACAAGGGCGAACGACCCCTGTGCATAGTGA
CCAATGTGGACTACTGCATCCAGAATTTGCAGGCGGTACGACGCCTGGGA
ATTTTGGGCGATTTCCAGGGTGAACAGGTGGAGGCGGATGCTTTCGATGA
CGATGCCAGTGCAGCTCAAGACTGAAAGCTTTCTAGACCAT
BS15058.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:34:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6749-RA | 1659 | CG6749-PA | 1..1659 | 17..1675 | 8295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:34:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6749-RA | 1834 | CG6749-RA | 6..1664 | 17..1675 | 8295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:34:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9731408..9732444 | 1675..639 | 5185 | 100 | Minus |
3L | 28110227 | 3L | 9732938..9733346 | 640..232 | 2045 | 100 | Minus |
3L | 28110227 | 3L | 9733585..9733802 | 234..17 | 1090 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:34:17 has no hits.
BS15058.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:43 Download gff for
BS15058.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6749-RA | 1..1659 | 17..1675 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:06:24 Download gff for
BS15058.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6749-RA | 1..1669 | 13..1680 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:57:10 Download gff for
BS15058.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6749-RA | 6..1663 | 17..1674 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:43 Download gff for
BS15058.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6749-RA | 1..1669 | 13..1680 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:28:05 Download gff for
BS15058.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6749-RA | 6..1663 | 17..1674 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:28:05 Download gff for
BS15058.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9731409..9732442 | 641..1674 | 100 | <- | Minus |
3L | 9732938..9733344 | 234..640 | 100 | <- | Minus |
3L | 9733586..9733802 | 17..233 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:57:10 Download gff for
BS15058.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9724509..9725542 | 641..1674 | 100 | <- | Minus |
arm_3L | 9726038..9726444 | 234..640 | 100 | <- | Minus |
arm_3L | 9726686..9726902 | 17..233 | 100 | | Minus |
BS15058.pep Sequence
Translation from 16 to 1674
> BS15058.pep
MSQTANWVLPLLLWLLCMGFPILHGADLCQPIGWRNFQCSEVASLQDLVD
LGAENWHTLAIRNVQTELEVGSGENADHLANLLDLDLTGAAPINVHTNGF
SILPNLRQLNLSGCGLVDIRGNHFAPESALQRIDFSHNQMELLDRDFFGN
LRKLIYANFSHNALKQCDLPHMPLLNRLELGHNRLVNATFGVCPQLQELI
LNDNQLIQLDVNAFRGLHGLLELQLSGNRLSSIGLETFQPLAQLRKLNLS
QNALDALRPNVFGAVQNFVLHLQQLDLSGNRIRLLFDNQFRVLARLQMLD
VSRNSIASLSPAHFVGLGSLRKLYLQYNAILEIKPATFAALLNLDTLDLS
YNNLEFLEEQIFGGNTLPRMRRLNLNGNRMKHLHPLAFSSLPFLEYLKLG
HNELKSLDVRMFAPMRRLQKLHLGHNLLEEINLDVLESLSSVQEILVDNN
RLTFLAKVNVSFPNLKRVAIEGNPWQCPCFVKLQHWLATRDVVYLRDNTG
YYKGERPLCIVTNVDYCIQNLQAVRRLGILGDFQGEQVEADAFDDDASAA
QD*
BS15058.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:29:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6749-PA | 552 | CG6749-PA | 1..552 | 1..552 | 2867 | 100 | Plus |
CG32055-PA | 534 | CG32055-PA | 4..532 | 9..534 | 754 | 34.5 | Plus |
lbk-PB | 1252 | CG8434-PB | 281..681 | 95..490 | 363 | 29.7 | Plus |
conv-PA | 1092 | CG8561-PA | 169..566 | 99..453 | 358 | 28.4 | Plus |
conv-PB | 1092 | CG8561-PB | 169..566 | 99..453 | 358 | 28.4 | Plus |
conv-PA | 1092 | CG8561-PA | 424..910 | 44..492 | 345 | 26.8 | Plus |
lbk-PB | 1252 | CG8434-PB | 336..658 | 79..421 | 312 | 29.4 | Plus |
conv-PA | 1092 | CG8561-PA | 194..643 | 100..457 | 287 | 26.3 | Plus |
conv-PA | 1092 | CG8561-PA | 130..429 | 175..469 | 240 | 26.5 | Plus |
lbk-PB | 1252 | CG8434-PB | 353..666 | 72..394 | 235 | 26.7 | Plus |
lbk-PB | 1252 | CG8434-PB | 401..658 | 55..323 | 164 | 24.5 | Plus |