Clone BS15060 Report

Search the DGRC for BS15060

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:150
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptEig71Ed-RA
Protein status:BS15060.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15060.3prime Sequence

330 bp (330 high quality bases) assembled on 2006-10-23

> BS15060.3prime
ATGGTCTAGAAAGCTTTTAATTAATACGATCCATGCCAGCGAGTTCAGCA
ATATCATTACAGTTCATGCGTCGATTAGAACCCAAGCAGTTCAGCCTGGT
CAGCTCACAACGTCCTACATTCCTCCAACGCCAATTGTTCCGAGTCTTAG
TTCTGCACTCTTGATTGAGGACGGGCAGGTTACGATCAGCTGCATTATTC
AATGTTTCCACACAGCGTTCACATCTCCGGGTCAACTCGTCGCAGTTCCG
ATTTTGTCCAGCCACCAAGACCACAAGCAGGACAGAAAATAGGGTCACAA
CTGCTGTAGTATGCATGTCGACTGATAACT

BS15060.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG7350-PA 300 Eig71Ed-RA 1..300 316..17 1500 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:16:13
Subject Length Description Subject Range Query Range Score Percent Strand
Eig71Ed-RA 415 CG7350-RA 62..361 316..17 1500 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:16:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15652700..15652903 283..80 1020 100 Minus
3L 28110227 3L 15652977..15653042 82..17 330 100 Minus
Blast to na_te.dros performed on 2015-02-13 06:16:12 has no hits.

BS15060.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:15:58 Download gff for BS15060.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7350-PA 1..300 17..316 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:49:02 Download gff for BS15060.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7350-PA 1..300 17..316 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:53:20 Download gff for BS15060.3prime
Subject Subject Range Query Range Percent Splice Strand
Eig71Ed-RA 62..361 17..316 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:20:51 Download gff for BS15060.3prime
Subject Subject Range Query Range Percent Splice Strand
Eig71Ed-RA 62..361 17..316 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:20:51 Download gff for BS15060.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 15652598..15652631 283..316 100 -> Minus
3L 15652701..15652901 82..282 100 -> Minus
3L 15652978..15653042 17..81 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:53:20 Download gff for BS15060.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15645698..15645731 283..316 100 -> Minus
arm_3L 15645801..15646001 82..282 100 -> Minus
arm_3L 15646078..15646142 17..81 100   Minus

BS15060.5prime Sequence

330 bp (330 high quality bases) assembled on 2006-10-23

> BS15060.5prime
GAAGTTATCATTCGACATGCATACTACAGCAGTTGTGACCCTATTTTCTG
TCCTGCTTGTGGTCTTGGTGGCTGGACAAAATCGGAACTGCGACGAGTTG
ACCCGGAGATGTGAACGCTGTGTGGAAACATTGAATAATGCAGCTGATCG
TAACCTGCCCGTCCTCAATCAAGAGTGCAGAACTAAGACTCGGAACAATT
GGCGTTGGAGGAATGTAGGACGTTGTGAGCTGACCAGGCTGAACTGCTTG
GGTTCTAATCGACGCATGAACTGTAATGATATTGCTGAACTCGCTGGCAT
GGATCGTATTAATTAAAAGCTTTCTAGACC

BS15060.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG7350-PA 300 Eig71Ed-RA 1..300 17..316 1500 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:17:20
Subject Length Description Subject Range Query Range Score Percent Strand
Eig71Ed-RA 415 CG7350-RA 62..361 17..316 1500 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:17:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15652700..15652903 50..253 1020 100 Plus
3L 28110227 3L 15652977..15653042 251..316 330 100 Plus
Blast to na_te.dros performed on 2015-02-04 21:17:19 has no hits.

BS15060.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:15:59 Download gff for BS15060.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7350-PA 1..300 17..316 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:49:03 Download gff for BS15060.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7350-PA 1..300 17..316 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:41:29 Download gff for BS15060.5prime
Subject Subject Range Query Range Percent Splice Strand
Eig71Ed-RA 59..361 10..316 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:45:12 Download gff for BS15060.5prime
Subject Subject Range Query Range Percent Splice Strand
Eig71Ed-RA 59..361 10..316 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:45:12 Download gff for BS15060.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15652701..15652901 51..251 100 -> Plus
3L 15652978..15653042 252..316 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:41:29 Download gff for BS15060.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15645801..15646001 51..251 100 -> Plus
arm_3L 15646078..15646142 252..316 100   Plus

BS15060.complete Sequence

332 bp assembled on 2006-11-01

GenBank Submission: FJ637864

> BS15060.complete
GAAGTTATCAGTCGACATGCATACTACAGCAGTTGTGACCCTATTTTCTG
TCCTGCTTGTGGTCTTGGTGGCTGGACAAAATCGGAACTGCGACGAGTTG
ACCCGGAGATGTGAACGCTGTGTGGAAACATTGAATAATGCAGCTGATCG
TAACCTGCCCGTCCTCAATCAAGAGTGCAGAACTAAGACTCGGAACAATT
GGCGTTGGAGGAATGTAGGACGTTGTGAGCTGACCAGGCTGAACTGCTTG
GGTTCTAATCGACGCATGAACTGTAATGATATTGCTGAACTCGCTGGCAT
GGATCGTATTAATTAAAAGCTTTCTAGACCAT

BS15060.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:53:47
Subject Length Description Subject Range Query Range Score Percent Strand
Eig71Ed-RA 300 CG7350-PA 1..300 17..316 1500 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:48
Subject Length Description Subject Range Query Range Score Percent Strand
Eig71Ed-RA 415 CG7350-RA 62..361 17..316 1500 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15652700..15652903 50..253 1020 100 Plus
3L 28110227 3L 15652977..15653042 251..316 330 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:53:46 has no hits.

BS15060.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:39 Download gff for BS15060.complete
Subject Subject Range Query Range Percent Splice Strand
Eig71Ed-RA 1..300 17..316 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:34:23 Download gff for BS15060.complete
Subject Subject Range Query Range Percent Splice Strand
Eig71Ed-RA 55..354 17..316 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:34:29 Download gff for BS15060.complete
Subject Subject Range Query Range Percent Splice Strand
Eig71Ed-RA 62..359 17..314 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:39 Download gff for BS15060.complete
Subject Subject Range Query Range Percent Splice Strand
Eig71Ed-RA 55..354 17..316 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:55:07 Download gff for BS15060.complete
Subject Subject Range Query Range Percent Splice Strand
Eig71Ed-RA 62..359 17..314 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:55:07 Download gff for BS15060.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15652598..15652631 17..50 100 -> Plus
3L 15652701..15652901 51..251 100 -> Plus
3L 15652978..15653040 252..314 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:34:29 Download gff for BS15060.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15645698..15645731 17..50 100 -> Plus
arm_3L 15645801..15646001 51..251 100 -> Plus
arm_3L 15646078..15646140 252..314 100   Plus

BS15060.pep Sequence

Translation from 16 to 315

> BS15060.pep
MHTTAVVTLFSVLLVVLVAGQNRNCDELTRRCERCVETLNNAADRNLPVL
NQECRTKTRNNWRWRNVGRCELTRLNCLGSNRRMNCNDIAELAGMDRIN*

BS15060.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:40
Subject Length Description Subject Range Query Range Score Percent Strand
Eig71Ed-PA 99 CG7350-PA 1..99 1..99 532 100 Plus
Eig71Ea-PA 100 CG16931-PA 1..97 1..97 327 59.8 Plus
Eig71Ef-PA 98 CG7599-PA 1..96 1..97 182 37.1 Plus
Eig71Ej-PA 98 CG7588-PA 1..97 1..98 163 32.7 Plus
Eig71Eh-PB 101 CG7594-PB 5..95 7..98 161 33.7 Plus