Clone Sequence Records
BS15060.3prime Sequence
330 bp (330 high quality bases) assembled on 2006-10-23
> BS15060.3prime
ATGGTCTAGAAAGCTTTTAATTAATACGATCCATGCCAGCGAGTTCAGCA
ATATCATTACAGTTCATGCGTCGATTAGAACCCAAGCAGTTCAGCCTGGT
CAGCTCACAACGTCCTACATTCCTCCAACGCCAATTGTTCCGAGTCTTAG
TTCTGCACTCTTGATTGAGGACGGGCAGGTTACGATCAGCTGCATTATTC
AATGTTTCCACACAGCGTTCACATCTCCGGGTCAACTCGTCGCAGTTCCG
ATTTTGTCCAGCCACCAAGACCACAAGCAGGACAGAAAATAGGGTCACAA
CTGCTGTAGTATGCATGTCGACTGATAACT
BS15060.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7350-PA | 300 | Eig71Ed-RA | 1..300 | 316..17 | 1500 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:16:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Eig71Ed-RA | 415 | CG7350-RA | 62..361 | 316..17 | 1500 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:16:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15652700..15652903 | 283..80 | 1020 | 100 | Minus |
3L | 28110227 | 3L | 15652977..15653042 | 82..17 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:16:12 has no hits.
BS15060.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:15:58 Download gff for
BS15060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7350-PA | 1..300 | 17..316 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:49:02 Download gff for
BS15060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7350-PA | 1..300 | 17..316 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:53:20 Download gff for
BS15060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eig71Ed-RA | 62..361 | 17..316 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:20:51 Download gff for
BS15060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eig71Ed-RA | 62..361 | 17..316 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:20:51 Download gff for
BS15060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15652598..15652631 | 283..316 | 100 | -> | Minus |
3L | 15652701..15652901 | 82..282 | 100 | -> | Minus |
3L | 15652978..15653042 | 17..81 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:53:20 Download gff for
BS15060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15645698..15645731 | 283..316 | 100 | -> | Minus |
arm_3L | 15645801..15646001 | 82..282 | 100 | -> | Minus |
arm_3L | 15646078..15646142 | 17..81 | 100 | | Minus |
BS15060.5prime Sequence
330 bp (330 high quality bases) assembled on 2006-10-23
> BS15060.5prime
GAAGTTATCATTCGACATGCATACTACAGCAGTTGTGACCCTATTTTCTG
TCCTGCTTGTGGTCTTGGTGGCTGGACAAAATCGGAACTGCGACGAGTTG
ACCCGGAGATGTGAACGCTGTGTGGAAACATTGAATAATGCAGCTGATCG
TAACCTGCCCGTCCTCAATCAAGAGTGCAGAACTAAGACTCGGAACAATT
GGCGTTGGAGGAATGTAGGACGTTGTGAGCTGACCAGGCTGAACTGCTTG
GGTTCTAATCGACGCATGAACTGTAATGATATTGCTGAACTCGCTGGCAT
GGATCGTATTAATTAAAAGCTTTCTAGACC
BS15060.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7350-PA | 300 | Eig71Ed-RA | 1..300 | 17..316 | 1500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:17:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Eig71Ed-RA | 415 | CG7350-RA | 62..361 | 17..316 | 1500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:17:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15652700..15652903 | 50..253 | 1020 | 100 | Plus |
3L | 28110227 | 3L | 15652977..15653042 | 251..316 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 21:17:19 has no hits.
BS15060.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:15:59 Download gff for
BS15060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7350-PA | 1..300 | 17..316 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:49:03 Download gff for
BS15060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7350-PA | 1..300 | 17..316 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:41:29 Download gff for
BS15060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eig71Ed-RA | 59..361 | 10..316 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:45:12 Download gff for
BS15060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eig71Ed-RA | 59..361 | 10..316 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:45:12 Download gff for
BS15060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15652701..15652901 | 51..251 | 100 | -> | Plus |
3L | 15652978..15653042 | 252..316 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:41:29 Download gff for
BS15060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15645801..15646001 | 51..251 | 100 | -> | Plus |
arm_3L | 15646078..15646142 | 252..316 | 100 | | Plus |
BS15060.complete Sequence
332 bp assembled on 2006-11-01
GenBank Submission: FJ637864
> BS15060.complete
GAAGTTATCAGTCGACATGCATACTACAGCAGTTGTGACCCTATTTTCTG
TCCTGCTTGTGGTCTTGGTGGCTGGACAAAATCGGAACTGCGACGAGTTG
ACCCGGAGATGTGAACGCTGTGTGGAAACATTGAATAATGCAGCTGATCG
TAACCTGCCCGTCCTCAATCAAGAGTGCAGAACTAAGACTCGGAACAATT
GGCGTTGGAGGAATGTAGGACGTTGTGAGCTGACCAGGCTGAACTGCTTG
GGTTCTAATCGACGCATGAACTGTAATGATATTGCTGAACTCGCTGGCAT
GGATCGTATTAATTAAAAGCTTTCTAGACCAT
BS15060.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:53:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Eig71Ed-RA | 300 | CG7350-PA | 1..300 | 17..316 | 1500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Eig71Ed-RA | 415 | CG7350-RA | 62..361 | 17..316 | 1500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15652700..15652903 | 50..253 | 1020 | 100 | Plus |
3L | 28110227 | 3L | 15652977..15653042 | 251..316 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:53:46 has no hits.
BS15060.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:39 Download gff for
BS15060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eig71Ed-RA | 1..300 | 17..316 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:34:23 Download gff for
BS15060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eig71Ed-RA | 55..354 | 17..316 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:34:29 Download gff for
BS15060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eig71Ed-RA | 62..359 | 17..314 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:39 Download gff for
BS15060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eig71Ed-RA | 55..354 | 17..316 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:55:07 Download gff for
BS15060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eig71Ed-RA | 62..359 | 17..314 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:55:07 Download gff for
BS15060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15652598..15652631 | 17..50 | 100 | -> | Plus |
3L | 15652701..15652901 | 51..251 | 100 | -> | Plus |
3L | 15652978..15653040 | 252..314 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:34:29 Download gff for
BS15060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15645698..15645731 | 17..50 | 100 | -> | Plus |
arm_3L | 15645801..15646001 | 51..251 | 100 | -> | Plus |
arm_3L | 15646078..15646140 | 252..314 | 100 | | Plus |
BS15060.pep Sequence
Translation from 16 to 315
> BS15060.pep
MHTTAVVTLFSVLLVVLVAGQNRNCDELTRRCERCVETLNNAADRNLPVL
NQECRTKTRNNWRWRNVGRCELTRLNCLGSNRRMNCNDIAELAGMDRIN*
BS15060.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Eig71Ed-PA | 99 | CG7350-PA | 1..99 | 1..99 | 532 | 100 | Plus |
Eig71Ea-PA | 100 | CG16931-PA | 1..97 | 1..97 | 327 | 59.8 | Plus |
Eig71Ef-PA | 98 | CG7599-PA | 1..96 | 1..97 | 182 | 37.1 | Plus |
Eig71Ej-PA | 98 | CG7588-PA | 1..97 | 1..98 | 163 | 32.7 | Plus |
Eig71Eh-PB | 101 | CG7594-PB | 5..95 | 7..98 | 161 | 33.7 | Plus |