Clone BS15061 Report

Search the DGRC for BS15061

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:150
Well:61
Vector:pDNR-Dual
Associated Gene/Transcriptsgll-RA
Protein status:BS15061.pep: full length peptide match
Sequenced Size:773

Clone Sequence Records

BS15061.3prime Sequence

771 bp (715 high quality bases) assembled on 2006-10-23

> BS15061.3prime
ATGGTCTAGAAAGCTTCTAAGGAGCCAGCCGTTCGTACACCCAACCATCC
TCTCCTTTGTGAACCAGTTTGCTGTCGACTTCGGATTCTACTCCTCCACC
TCGTCTAAAGCGGATGCGATCGTGGAGCCGATCGGTCTGACCCTGCCAGA
ACTCAATGAGGTCGGGACGCACCAAGTAGCCACCCCAGTTGGGCAGCGGC
ACCTCGCCATCGGGACCCAGTTCTAGCTTAATTGCCGCCTCCACGTCGTC
CAAGTAGCTGCGCGACGGAATCCGCTGGCTCTGCGGACTGGCAGCGGCTC
CGATTTGGCTGGCTCTTGGTCGCTGGTGGAAGTACTTGAGGGAGTCTTCC
ACCGAGATCTTCTCAGCCACGCCCTCGATGCGGACACTTCGCCGCAAAGG
GAGCCAGTAGAAGGATATGGCTACATAGGGATTGGACTTGATGTCCTCAG
CCTTGCGGCTACCGTAGTTCGTGAAGAAGGTGAATCCCTCGGCGGTGGCT
TCTTTAACCAGCACATAGCGATTGGAAGGCCTACCCTCCGCACTCACGGT
AGCCAGGGCGGCGGCATTGGGCTCCAAGATCTCCGGGGTTTTCAGCGCCA
ACTCCAGCCAGTCTCGGAATACACAGAAGGGATTCTTCACCTTGATGTTA
TCCTCCAGGAAGGCGTCCTTGCGCTCACAGTACTTCAGACGAAGTGCCGA
AAGTGGCACCTCCGAGGCACCTTGGCTCATCCTTCGAATTGTTTGCAGCC
ACTTCATGTCAACTGATAACT

BS15061.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG31472-PA 741 CG31472-RA 1..741 757..17 3680 99.8 Minus
CG31472-PB 714 CG31472-RB 1..714 730..17 3570 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:39:59
Subject Length Description Subject Range Query Range Score Percent Strand
sgll-RA 1253 CG31472-RA 137..877 757..17 3690 99.9 Minus
sgll-RB 1314 CG31472-RB 199..938 756..17 3685 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:39:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7810856..7811536 697..17 3405 100 Minus
3R 32079331 3R 7810730..7810789 756..697 285 98.3 Minus
Blast to na_te.dros performed on 2015-02-13 12:39:58 has no hits.

BS15061.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:16:00 Download gff for BS15061.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31472-PA 1..741 17..757 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:49:05 Download gff for BS15061.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31472-PA 1..741 17..757 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:03:32 Download gff for BS15061.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31472-RA 106..848 13..757 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:18:56 Download gff for BS15061.3prime
Subject Subject Range Query Range Percent Splice Strand
sgll-RA 137..879 13..757 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:18:56 Download gff for BS15061.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 7810726..7810789 697..759 96 -> Minus
3R 7810857..7811538 13..696 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:03:32 Download gff for BS15061.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3636448..3636511 697..759 96 -> Minus
arm_3R 3636579..3637260 13..696 99   Minus

BS15061.5prime Sequence

771 bp (743 high quality bases) assembled on 2006-10-23

> BS15061.5prime
GAAGTTATCCTTCGAGATGAAGTTGCTGCAAACAATTCGAAGGATGAGCC
AAGGTGCCTCGGAGGTGCCACTTTCGGCACTTCCTCTGAAGTACTGTGAG
CGCAAGGACGCCTTCCTGGAGGATAACATCAAGGTGAAGAATCCCTTCTG
TGTATTCCGAGACTGGCTGGAGTTGGCGCTGAAAACCCCGGAGATCTTGG
AGCCCAATGCCGCCGCCCTGGCTACCGTGAGTGCGGAGGGTAGGCCTTCC
AATCGCTATGTGCTGGTTAAAGAAGCCACCGCCGAGGGATTCACCTTCTT
CACGAACTACGGTAGCCGCAAGGCTGAGGACATCAAGTCCAATCCCTATG
TAGCCATATCCTTCTACTGGCTCCCTTTGCGGCGAAGTGTCCGCATCGAG
GGCGTGGCTGAGAAGATCTCGGTGGAAGACTCCCTCAAGTACTTCCACCA
GCGACCAAGAGCCAGCCAAATCGGAGCCGCTGCCAGTCCGCAGAGCCAGC
GGATTCCGTCGCGCAGCTACTTGGACGACGTGGAGGCGGCAATTAAGCTA
GAACTGGGTCCCGATGGCGAGGTGCCGCTGCCCAACTGGGGTGGCTACTT
GGTGCGTCCCGACCTCATTGAGTTCTGGCAGGGTCAGACCGATCGGCTCC
ACGATCGCATCCGCTTTAGACGAGGTGGAGGAGTAGAATCCGAAGTCGAC
AGCAAACTGGTTCACAAAGGAGAGGATGGTTGGGTGTACGAACGGCTGGC
TCCTTAGAAGCTTTCTAGACC

BS15061.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG31472-PA 741 CG31472-RA 1..741 17..757 3680 99.8 Plus
CG31472-PB 714 CG31472-RB 1..714 44..757 3545 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:26:26
Subject Length Description Subject Range Query Range Score Percent Strand
sgll-RA 1253 CG31472-RA 137..877 17..757 3690 99.9 Plus
sgll-RB 1314 CG31472-RB 199..938 18..757 3685 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:26:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7810856..7811536 77..757 3390 99.9 Plus
3R 32079331 3R 7810730..7810789 18..77 300 100 Plus
Blast to na_te.dros performed on 2015-02-11 03:26:24 has no hits.

BS15061.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:16:01 Download gff for BS15061.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31472-PA 1..741 17..757 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:49:06 Download gff for BS15061.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31472-PA 1..741 17..757 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:05:01 Download gff for BS15061.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31472-RA 97..848 9..761 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:51:17 Download gff for BS15061.5prime
Subject Subject Range Query Range Percent Splice Strand
sgll-RA 128..879 9..761 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:51:17 Download gff for BS15061.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7810728..7810789 15..77 98 -> Plus
3R 7810857..7811538 78..761 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:05:01 Download gff for BS15061.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3636450..3636511 15..77 98 -> Plus
arm_3R 3636579..3637260 78..761 99   Plus

BS15061.complete Sequence

773 bp assembled on 2010-02-09

GenBank Submission: KX804194

> BS15061.complete
GAAGTTATCAGTCGACATGAAGTTGCTGCAAACAATTCGAAGGATGAGCC
AAGGTGCCTCGGAGGTGCCACTTTCGGCACTTCGTCTGAAGTACTGTGAG
CGCAAGGACGCCTTCCTGGAGGATAACATCAAGGTGAAGAATCCCTTCTG
TGTATTCCGAGACTGGCTGGAGTTGGCGCTGAAAACCCCGGAGATCTTGG
AGCCCAATGCCGCCGCCCTGGCTACCGTGAGTGCGGAGGGTAGGCCTTCC
AATCGCTATGTGCTGGTTAAAGAAGCCACCGCCGAGGGATTCACCTTCTT
CACGAACTACGGTAGCCGCAAGGCTGAGGACATCAAGTCCAATCCCTATG
TAGCCATATCCTTCTACTGGCTCCCTTTGCGGCGAAGTGTCCGCATCGAG
GGCGTGGCTGAGAAGATCTCGGTGGAAGACTCCCTCAAGTACTTCCACCA
GCGACCAAGAGCCAGCCAAATCGGAGCCGCTGCCAGTCCGCAGAGCCAGC
GGATTCCGTCGCGCAGCTACTTGGACGACGTGGAGGCGGCAATTAAGCTA
GAACTGGGTCCCGATGGCGAGGTGCCGCTGCCCAACTGGGGTGGCTACTT
GGTGCGTCCCGACCTCATTGAGTTCTGGCAGGGTCAGACCGATCGGCTCC
ACGATCGCATCCGCTTTAGACGAGGTGGAGGAGTAGAATCCGAAGTCGAC
AGCAAACTGGTTCACAAAGGAGAGGATGGTTGGGTGTACGAACGGCTGGC
TCCTTAGAAGCTTTCTAGACCAT

BS15061.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:10:41
Subject Length Description Subject Range Query Range Score Percent Strand
sgll-RA 741 CG31472-PA 1..741 17..757 3705 100 Plus
sgll-RB 714 CG31472-PB 1..714 44..757 3570 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:10:42
Subject Length Description Subject Range Query Range Score Percent Strand
sgll-RA 1253 CG31472-RA 137..877 17..757 3705 100 Plus
sgll-RB 1314 CG31472-RB 199..938 18..757 3700 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:10:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7810856..7811536 77..757 3405 100 Plus
3R 32079331 3R 7810730..7810789 18..77 300 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:10:40 has no hits.

BS15061.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:11:05 Download gff for BS15061.complete
Subject Subject Range Query Range Percent Splice Strand
CG31472-RA 106..846 17..757 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:27:25 Download gff for BS15061.complete
Subject Subject Range Query Range Percent Splice Strand
CG31472-RA 106..846 17..757 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:05:50 Download gff for BS15061.complete
Subject Subject Range Query Range Percent Splice Strand
CG31472-RA 106..846 17..757 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:12:33 Download gff for BS15061.complete
Subject Subject Range Query Range Percent Splice Strand
sgll-RA 137..877 17..757 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:12:33 Download gff for BS15061.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7810728..7810789 17..77 98 -> Plus
3R 7810857..7811536 78..757 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:27:25 Download gff for BS15061.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3636450..3636511 17..77 98 -> Plus
arm_3R 3636579..3637258 78..757 100   Plus

BS15061.pep Sequence

Translation from 16 to 756

> BS15061.pep
MKLLQTIRRMSQGASEVPLSALRLKYCERKDAFLEDNIKVKNPFCVFRDW
LELALKTPEILEPNAAALATVSAEGRPSNRYVLVKEATAEGFTFFTNYGS
RKAEDIKSNPYVAISFYWLPLRRSVRIEGVAEKISVEDSLKYFHQRPRAS
QIGAAASPQSQRIPSRSYLDDVEAAIKLELGPDGEVPLPNWGGYLVRPDL
IEFWQGQTDRLHDRIRFRRGGGVESEVDSKLVHKGEDGWVYERLAP*

BS15061.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:10:20
Subject Length Description Subject Range Query Range Score Percent Strand
sgll-PA 246 CG31472-PA 1..246 1..246 1279 100 Plus
sgll-PB 237 CG31472-PB 1..237 10..246 1237 100 Plus
CG31473-PA 257 CG31473-PA 39..252 35..242 289 33.6 Plus