Clone Sequence Records
BS15061.3prime Sequence
771 bp (715 high quality bases) assembled on 2006-10-23
> BS15061.3prime
ATGGTCTAGAAAGCTTCTAAGGAGCCAGCCGTTCGTACACCCAACCATCC
TCTCCTTTGTGAACCAGTTTGCTGTCGACTTCGGATTCTACTCCTCCACC
TCGTCTAAAGCGGATGCGATCGTGGAGCCGATCGGTCTGACCCTGCCAGA
ACTCAATGAGGTCGGGACGCACCAAGTAGCCACCCCAGTTGGGCAGCGGC
ACCTCGCCATCGGGACCCAGTTCTAGCTTAATTGCCGCCTCCACGTCGTC
CAAGTAGCTGCGCGACGGAATCCGCTGGCTCTGCGGACTGGCAGCGGCTC
CGATTTGGCTGGCTCTTGGTCGCTGGTGGAAGTACTTGAGGGAGTCTTCC
ACCGAGATCTTCTCAGCCACGCCCTCGATGCGGACACTTCGCCGCAAAGG
GAGCCAGTAGAAGGATATGGCTACATAGGGATTGGACTTGATGTCCTCAG
CCTTGCGGCTACCGTAGTTCGTGAAGAAGGTGAATCCCTCGGCGGTGGCT
TCTTTAACCAGCACATAGCGATTGGAAGGCCTACCCTCCGCACTCACGGT
AGCCAGGGCGGCGGCATTGGGCTCCAAGATCTCCGGGGTTTTCAGCGCCA
ACTCCAGCCAGTCTCGGAATACACAGAAGGGATTCTTCACCTTGATGTTA
TCCTCCAGGAAGGCGTCCTTGCGCTCACAGTACTTCAGACGAAGTGCCGA
AAGTGGCACCTCCGAGGCACCTTGGCTCATCCTTCGAATTGTTTGCAGCC
ACTTCATGTCAACTGATAACT
BS15061.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31472-PA | 741 | CG31472-RA | 1..741 | 757..17 | 3680 | 99.8 | Minus |
CG31472-PB | 714 | CG31472-RB | 1..714 | 730..17 | 3570 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:39:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sgll-RA | 1253 | CG31472-RA | 137..877 | 757..17 | 3690 | 99.9 | Minus |
sgll-RB | 1314 | CG31472-RB | 199..938 | 756..17 | 3685 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:39:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7810856..7811536 | 697..17 | 3405 | 100 | Minus |
3R | 32079331 | 3R | 7810730..7810789 | 756..697 | 285 | 98.3 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:39:58 has no hits.
BS15061.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:16:00 Download gff for
BS15061.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31472-PA | 1..741 | 17..757 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:49:05 Download gff for
BS15061.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31472-PA | 1..741 | 17..757 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:03:32 Download gff for
BS15061.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31472-RA | 106..848 | 13..757 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:18:56 Download gff for
BS15061.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sgll-RA | 137..879 | 13..757 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:18:56 Download gff for
BS15061.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7810726..7810789 | 697..759 | 96 | -> | Minus |
3R | 7810857..7811538 | 13..696 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:03:32 Download gff for
BS15061.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3636448..3636511 | 697..759 | 96 | -> | Minus |
arm_3R | 3636579..3637260 | 13..696 | 99 | | Minus |
BS15061.5prime Sequence
771 bp (743 high quality bases) assembled on 2006-10-23
> BS15061.5prime
GAAGTTATCCTTCGAGATGAAGTTGCTGCAAACAATTCGAAGGATGAGCC
AAGGTGCCTCGGAGGTGCCACTTTCGGCACTTCCTCTGAAGTACTGTGAG
CGCAAGGACGCCTTCCTGGAGGATAACATCAAGGTGAAGAATCCCTTCTG
TGTATTCCGAGACTGGCTGGAGTTGGCGCTGAAAACCCCGGAGATCTTGG
AGCCCAATGCCGCCGCCCTGGCTACCGTGAGTGCGGAGGGTAGGCCTTCC
AATCGCTATGTGCTGGTTAAAGAAGCCACCGCCGAGGGATTCACCTTCTT
CACGAACTACGGTAGCCGCAAGGCTGAGGACATCAAGTCCAATCCCTATG
TAGCCATATCCTTCTACTGGCTCCCTTTGCGGCGAAGTGTCCGCATCGAG
GGCGTGGCTGAGAAGATCTCGGTGGAAGACTCCCTCAAGTACTTCCACCA
GCGACCAAGAGCCAGCCAAATCGGAGCCGCTGCCAGTCCGCAGAGCCAGC
GGATTCCGTCGCGCAGCTACTTGGACGACGTGGAGGCGGCAATTAAGCTA
GAACTGGGTCCCGATGGCGAGGTGCCGCTGCCCAACTGGGGTGGCTACTT
GGTGCGTCCCGACCTCATTGAGTTCTGGCAGGGTCAGACCGATCGGCTCC
ACGATCGCATCCGCTTTAGACGAGGTGGAGGAGTAGAATCCGAAGTCGAC
AGCAAACTGGTTCACAAAGGAGAGGATGGTTGGGTGTACGAACGGCTGGC
TCCTTAGAAGCTTTCTAGACC
BS15061.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31472-PA | 741 | CG31472-RA | 1..741 | 17..757 | 3680 | 99.8 | Plus |
CG31472-PB | 714 | CG31472-RB | 1..714 | 44..757 | 3545 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:26:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sgll-RA | 1253 | CG31472-RA | 137..877 | 17..757 | 3690 | 99.9 | Plus |
sgll-RB | 1314 | CG31472-RB | 199..938 | 18..757 | 3685 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:26:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7810856..7811536 | 77..757 | 3390 | 99.9 | Plus |
3R | 32079331 | 3R | 7810730..7810789 | 18..77 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 03:26:24 has no hits.
BS15061.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:16:01 Download gff for
BS15061.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31472-PA | 1..741 | 17..757 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:49:06 Download gff for
BS15061.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31472-PA | 1..741 | 17..757 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:05:01 Download gff for
BS15061.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31472-RA | 97..848 | 9..761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:51:17 Download gff for
BS15061.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sgll-RA | 128..879 | 9..761 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:51:17 Download gff for
BS15061.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7810728..7810789 | 15..77 | 98 | -> | Plus |
3R | 7810857..7811538 | 78..761 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:05:01 Download gff for
BS15061.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3636450..3636511 | 15..77 | 98 | -> | Plus |
arm_3R | 3636579..3637260 | 78..761 | 99 | | Plus |
BS15061.complete Sequence
773 bp assembled on 2010-02-09
GenBank Submission: KX804194
> BS15061.complete
GAAGTTATCAGTCGACATGAAGTTGCTGCAAACAATTCGAAGGATGAGCC
AAGGTGCCTCGGAGGTGCCACTTTCGGCACTTCGTCTGAAGTACTGTGAG
CGCAAGGACGCCTTCCTGGAGGATAACATCAAGGTGAAGAATCCCTTCTG
TGTATTCCGAGACTGGCTGGAGTTGGCGCTGAAAACCCCGGAGATCTTGG
AGCCCAATGCCGCCGCCCTGGCTACCGTGAGTGCGGAGGGTAGGCCTTCC
AATCGCTATGTGCTGGTTAAAGAAGCCACCGCCGAGGGATTCACCTTCTT
CACGAACTACGGTAGCCGCAAGGCTGAGGACATCAAGTCCAATCCCTATG
TAGCCATATCCTTCTACTGGCTCCCTTTGCGGCGAAGTGTCCGCATCGAG
GGCGTGGCTGAGAAGATCTCGGTGGAAGACTCCCTCAAGTACTTCCACCA
GCGACCAAGAGCCAGCCAAATCGGAGCCGCTGCCAGTCCGCAGAGCCAGC
GGATTCCGTCGCGCAGCTACTTGGACGACGTGGAGGCGGCAATTAAGCTA
GAACTGGGTCCCGATGGCGAGGTGCCGCTGCCCAACTGGGGTGGCTACTT
GGTGCGTCCCGACCTCATTGAGTTCTGGCAGGGTCAGACCGATCGGCTCC
ACGATCGCATCCGCTTTAGACGAGGTGGAGGAGTAGAATCCGAAGTCGAC
AGCAAACTGGTTCACAAAGGAGAGGATGGTTGGGTGTACGAACGGCTGGC
TCCTTAGAAGCTTTCTAGACCAT
BS15061.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:10:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sgll-RA | 741 | CG31472-PA | 1..741 | 17..757 | 3705 | 100 | Plus |
sgll-RB | 714 | CG31472-PB | 1..714 | 44..757 | 3570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:10:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sgll-RA | 1253 | CG31472-RA | 137..877 | 17..757 | 3705 | 100 | Plus |
sgll-RB | 1314 | CG31472-RB | 199..938 | 18..757 | 3700 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:10:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7810856..7811536 | 77..757 | 3405 | 100 | Plus |
3R | 32079331 | 3R | 7810730..7810789 | 18..77 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:10:40 has no hits.
BS15061.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:11:05 Download gff for
BS15061.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31472-RA | 106..846 | 17..757 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:27:25 Download gff for
BS15061.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31472-RA | 106..846 | 17..757 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:05:50 Download gff for
BS15061.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31472-RA | 106..846 | 17..757 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:12:33 Download gff for
BS15061.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sgll-RA | 137..877 | 17..757 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:12:33 Download gff for
BS15061.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7810728..7810789 | 17..77 | 98 | -> | Plus |
3R | 7810857..7811536 | 78..757 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:27:25 Download gff for
BS15061.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3636450..3636511 | 17..77 | 98 | -> | Plus |
arm_3R | 3636579..3637258 | 78..757 | 100 | | Plus |
BS15061.pep Sequence
Translation from 16 to 756
> BS15061.pep
MKLLQTIRRMSQGASEVPLSALRLKYCERKDAFLEDNIKVKNPFCVFRDW
LELALKTPEILEPNAAALATVSAEGRPSNRYVLVKEATAEGFTFFTNYGS
RKAEDIKSNPYVAISFYWLPLRRSVRIEGVAEKISVEDSLKYFHQRPRAS
QIGAAASPQSQRIPSRSYLDDVEAAIKLELGPDGEVPLPNWGGYLVRPDL
IEFWQGQTDRLHDRIRFRRGGGVESEVDSKLVHKGEDGWVYERLAP*
BS15061.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:10:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sgll-PA | 246 | CG31472-PA | 1..246 | 1..246 | 1279 | 100 | Plus |
sgll-PB | 237 | CG31472-PB | 1..237 | 10..246 | 1237 | 100 | Plus |
CG31473-PA | 257 | CG31473-PA | 39..252 | 35..242 | 289 | 33.6 | Plus |