Clone Sequence Records
BS15062.3prime Sequence
862 bp (751 high quality bases) assembled on 2006-10-23
> BS15062.3prime
ATGGTCTAGAAAGCTTTTACTGCAACACACAAACGGCGGAGGCGCCGCTA
TATTGGTTATTCAAGCGTCGACGCATTCCCTCCAGATAAATGTCGCGACT
GAAGAGCCCAGCAGCCAAGGGAATTGCATCGGTTCCTGCACGTATGAGTG
TTCGAAAAAGCGCCCAAACTGGCTTGTGGTCCGAGGTGGTTATCGATGGC
ACCGAGTCATAGAGCAGACATTGGACATGCGGCTGCGTGGGTGTGGATAC
ACCAGGCACTAGGGTCTGCCGACGGATGACTAGTCCCTGCATTTGGCGGT
ACTTGTAGAGAATGCGATCCGTGTAGGCGGGAGCTCGCTGCTTCGACGAG
GTATCAAAGTTCTGGCTGCCCGGATCGTACTTGTACGTGGGTGGAAATGT
GATGTTCGCCTCCATAAATCCTCGGAAGGCGGCGCCATCAGCCAGAACGG
AAGTCAACTGATCCGTGTGCATGTAACCGTGCGGTAAATGCGACGGCAGC
GGGAACTTGGTGTTCTGAATCCATTCCAGCAGCTTTTCACGCGGCTCACC
CAGTCGAAAGTTAAGATCGCCGCACCAGAAGACATTGTCAAAGTTCTGCG
TGACATCTTTGTTCTTATGCCGCTGATTGGGCAAATTGCGAGGCAAGTCC
AGAGCATTGATTATCCGCTTAACGTCCGACACACGCTCTTTAACCTTCTG
CTGGTGCGCCGTTAAATGCGAGGTCACAAACAGCATGGAAGTGCCAAACA
GGCAAAAGGATATGGCCACGGCACCCTTTGTCCGAAAGGCGGAGCCCGTG
CGCACCGACATAGATGCGTCCTCGGGAACGGAGCAGTACCAGATCAAGTC
CCGTCGCATATA
BS15062.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10426-PA | 2244 | CG10426-RA | 1399..2244 | 862..17 | 4230 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:37:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10426-RB | 3051 | CG10426-RB | 1763..2609 | 862..16 | 4235 | 100 | Minus |
| CG10426-RA | 3133 | CG10426-RA | 1845..2691 | 862..16 | 4235 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:37:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12280127..12280863 | 862..126 | 3685 | 100 | Minus |
| 3L | 28110227 | 3L | 12280925..12281034 | 125..16 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:37:16 has no hits.
BS15062.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:16:02 Download gff for
BS15062.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10426-PA | 1400..2244 | 17..861 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:49:08 Download gff for
BS15062.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10426-PA | 1400..2244 | 17..861 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:37:50 Download gff for
BS15062.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10426-RA | 1846..2696 | 8..861 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:44:40 Download gff for
BS15062.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10426-RA | 1846..2696 | 8..861 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:44:40 Download gff for
BS15062.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12280128..12280863 | 126..861 | 100 | -> | Minus |
| 3L | 12280925..12281039 | 8..125 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:37:50 Download gff for
BS15062.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12274025..12274139 | 8..125 | 96 | | Minus |
| arm_3L | 12273228..12273963 | 126..861 | 100 | -> | Minus |
BS15062.5prime Sequence
884 bp (857 high quality bases) assembled on 2006-10-23
> BS15062.5prime
GAAGTTATCCGTCGACATGCAGCACAGCAGCGCGGGAAGTGAGGAACGGA
TAACCAGTTCCACCAGCAGTCCCAGATCCGGTCACAAGACCGCGAGCTCC
CTGTTCGGTTTGCTGAGCAAGCGACCTAGTAAGGTGGAGCCACATCCCGT
GACACCCGAATCGCCAAGATTACAACAGAGACCCGTGTCCGCCTGTGGCC
AATACGATGTCAGTTTCGCCAAGTGCAATGCAGATACGTCTGCAAACCAT
GTCAATAACAATGGGAGCACCCTCAAAAGCCAAACGCTGCCGCTGGAGAA
GTCGCACAGCGGGCTGATCAGCTTCCACAGGCGTGCAAAGCCAAGTTCCT
CGAAAGGAAAGAATCACTCGCACCGGCACAGTACGGATGCTGGTTCCCAA
AGCGATGGAGGAGCCGACGTGGTGATGCGGCGCAAGTCGCCCAAGCATCG
CTCACCCAATCACAATAGATTTAGTCACCAGTTCAGTCTGTGCTGCAAGG
CGGAAAAGAAACCGATGACACCGCCGGTGACCGTGCGTTATAACTCCATA
CCGGATAGCAACAGTGTTCTGCGGCGCGATAACCTCTCGCTAAGTTGGAG
CATGGTGGACAACAACTCGGGCTCGCTGCACTCCAGCGAAGGATCCTCAC
ACCGACCGCGTCCGTCCAGTGAGTGTGCCAGTGCGCCAGAATCACCGGTG
GCCAGCAAAACCTTCTTTGCCCACTGCAGCCCTGCTGCGGCCAGCGCTTC
GGTGGCACGGAGCGAAAGCCTTCAAAATCGCTCGCCCATTCGACCCATGG
CAGTATCAGCCTGCCGATCCCGACTGCGTTTAAAGCTCTATCCACCTGGA
CAAGAGTTACCCCCTCTTCAGGCAGCCACAGAAC
BS15062.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10426-PA | 2244 | CG10426-RA | 1..868 | 17..884 | 4340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:17:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10426-RB | 3051 | CG10426-RB | 363..1232 | 15..884 | 4350 | 100 | Plus |
| CG10426-RA | 3133 | CG10426-RA | 445..1314 | 15..884 | 4350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:16:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12278658..12279527 | 15..884 | 4350 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 21:17:00 has no hits.
BS15062.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:16:03 Download gff for
BS15062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10426-PA | 1..868 | 17..884 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:49:09 Download gff for
BS15062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10426-PA | 1..868 | 17..884 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:41:21 Download gff for
BS15062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10426-RA | 445..1314 | 15..884 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:45:06 Download gff for
BS15062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10426-RA | 445..1314 | 15..884 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:45:06 Download gff for
BS15062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12278658..12279527 | 15..884 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:41:21 Download gff for
BS15062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12271758..12272627 | 15..884 | 100 | | Plus |
BS15062.complete Sequence
2276 bp assembled on 2009-12-07
GenBank Submission: KX800971
> BS15062.complete
GAAGTTATCAGTCGACATGCAGCACAGCAGCGCGGGAAGTGAGGAACGGA
TAACCAGTTCCACCAGCAGTCCCAGATCCGGTCACAAGACCGCGAGCTCC
CTGTTCGGTTTGCTGAGCAAGCGACCTAGTAAGGTGGAGCCACATCCCGT
GACACCCGAATCGCCAAGATTACAACAGAGACCCGTGTCCGCCTGTGGCC
AATACGATGTCAGTTTCGCCAAGTGCAATGCAGATACGTCTGCAAACCAT
GTCAATAACAATGGGAGCACCCTCAAAAGCCAAACGCTGCCGCTGGAGAA
GTCGCACAGCGGGCTGATCAGCTTCCACAGGCGTGCAAAGCCAAGTTCCT
CGAAAGGAAAGAATCACTCGCACCGGCACAGTACGGATGCTGGTTCCCAA
AGCGATGGAGGAGCCGACGTGGTGATGCGGCGCAAGTCGCCCAAGCATCG
CTCACCCAATCACAATAGATTTAGTCACCAGTTCAGTCTGTGCTGCAAGG
CGGAAAAGAAACCGATGACACCGCCGGTGACCGTGCGTTATAACTCCATA
CCGGATAGCAACAGTGTTCTGCGGCGCGATAACCTCTCGCTAAGTTGGAG
CATGGTGGACAACAACTCGGGCTCGCTGCACTCCAGCGAAGGATCCTCAC
ACCGACCGCGTCCGTCCAGTGAGTGTGCCAGTGCGCCAGAATCACCGGTG
GCCAGCAAAACCTTCTTTGCCCACTGCAGCCCTGCTGCGGCCAGCGCTTC
GGTGGCACGGAGCGAAAGCCTTCAAAATCGCTCGCCCATTCGACCCATGG
CAGTATCAGCCTGCCGATCCCGACTGCGTTTAAAGCTCTATCCACCTGGA
CAAGAGTTACCCCCTCTTCAGGCAGCCACAGAACCTGGTGACATTAAAAG
AGCCACCACACCACAGCACATGTCCTCGCCGAATATAGCCACTCAGCCAG
ATGGAATAGAACACATAGAGGAGCAGCCAGGCGTGAGGTTTATGTCGCAC
GAGAACATGACACTCCAAAGACAGGGTTCGGGATCTAATCTGGCTCGCCA
GACTTTAATGGCGGCACATGCATTGAATCTGATCCCGGCGGATAACGCCA
GGGAGCGAAGTTACCTGGATGGCAGGCTGGGATCAACTTCCCTTTTGGGT
CCCAGTGAGCTAAGCCGCGTGCTGCCGCAAAAGGAGATTACCGTCTTTGT
GGGAACTTGGAATATGAATGGCCACAGTCCACCCAAACAACTTAATGATT
TTGTGCTGCCAGCCAATGTGGAGCACGTGCCCGACATTGTGGTAATGGGC
ACACAGGAGTCCACCCCAGACCGCTTCGAGTGGGAGGTCACCATTCAGGA
GACCCTAGGTCCCTCTCACGTGCTCTTCCATGCCACAACTCTGGGTACCC
TCCACCTGGCTGTGTATATGCGACGGGACTTGATCTGGTACTGCTCCGTT
CCCGAGGACGCATCTATGTCGGTGCGCACGGGCTCCGCCTTTCGGACAAA
GGGTGCCGTGGCCATATCCTTTTGCCTGTTTGGCACTTCCATGCTGTTTG
TGACCTCGCATTTAACGGCGCACCAGCAGAAGGTTAAAGAGCGTGTGTCG
GACGTTAAGCGGATAATCAATGCTCTGGACTTGCCTCGCAATTTGCCCAA
TCAGCGGCATAAGAACAAAGATGTCACGCAGAACTTTGACAATGTCTTCT
GGTGCGGCGATCTTAACTTTCGACTGGGTGAGCCGCGTGAAAAGCTGCTG
GAATGGATTCAGAACACCAAGTTCCCGCTGCCGTCGCATTTACCGCACGG
TTACATGCACACGGATCAGTTGACTTCCGTTCTGGCTGATGGCGCCGCCT
TCCGAGGATTTATGGAGGCGAACATCACATTTCCACCCACGTACAAGTAC
GATCCGGGCAGCCAGAACTTTGATACCTCGTCGAAGCAGCGAGCTCCCGC
CTACACGGATCGCATTCTCTACAAGTACCGCCAAATGCAGGGACTAGTCA
TCCGTCGGCAGACCCTAGTGCCTGGTGTATCCACACCCACGCAGCCGCAT
GTCCAATGTCTGCTCTATGACTCGGTGCCATCGATAACCACCTCGGACCA
CAAGCCAGTTTGGGCGCTTTTTCGAACACTCATACGTGCAGGAACCGATG
CAATTCCCTTGGCTGCTGGGCTCTTCAGTCGCGACATTTATCTGGAGGGA
ATGCGTCGACGCTTGAATAACCAATATAGCGGCGCCTCCGCCGTTTGTGT
GTTGCAGTAAAAGCTTTCTAGACCAT
BS15062.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:49:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10426-RB | 2244 | CG10426-PB | 1..2244 | 17..2260 | 11220 | 100 | Plus |
| CG10426-RA | 2244 | CG10426-PA | 1..2244 | 17..2260 | 11220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:49:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10426-RB | 3051 | CG10426-RB | 363..2609 | 15..2261 | 11235 | 100 | Plus |
| CG10426-RA | 3133 | CG10426-RA | 445..2691 | 15..2261 | 11235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12278658..12279879 | 15..1236 | 6110 | 100 | Plus |
| 3L | 28110227 | 3L | 12279949..12280863 | 1237..2151 | 4575 | 100 | Plus |
| 3L | 28110227 | 3L | 12280925..12281034 | 2152..2261 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:49:27 has no hits.
BS15062.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:41:49 Download gff for
BS15062.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10426-RA | 409..2650 | 17..2258 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:58:50 Download gff for
BS15062.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10426-RA | 447..2688 | 17..2258 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:05:17 Download gff for
BS15062.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10426-RA | 409..2650 | 17..2258 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:57:44 Download gff for
BS15062.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10426-RA | 447..2688 | 17..2258 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:57:44 Download gff for
BS15062.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12278660..12279879 | 17..1236 | 100 | -> | Plus |
| 3L | 12279949..12280863 | 1237..2151 | 100 | -> | Plus |
| 3L | 12280925..12281031 | 2152..2258 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:58:50 Download gff for
BS15062.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12271760..12272979 | 17..1236 | 100 | -> | Plus |
| arm_3L | 12273049..12273963 | 1237..2151 | 100 | -> | Plus |
| arm_3L | 12274025..12274131 | 2152..2258 | 100 | | Plus |
BS15062.pep Sequence
Translation from 16 to 2259
> BS15062.pep
MQHSSAGSEERITSSTSSPRSGHKTASSLFGLLSKRPSKVEPHPVTPESP
RLQQRPVSACGQYDVSFAKCNADTSANHVNNNGSTLKSQTLPLEKSHSGL
ISFHRRAKPSSSKGKNHSHRHSTDAGSQSDGGADVVMRRKSPKHRSPNHN
RFSHQFSLCCKAEKKPMTPPVTVRYNSIPDSNSVLRRDNLSLSWSMVDNN
SGSLHSSEGSSHRPRPSSECASAPESPVASKTFFAHCSPAAASASVARSE
SLQNRSPIRPMAVSACRSRLRLKLYPPGQELPPLQAATEPGDIKRATTPQ
HMSSPNIATQPDGIEHIEEQPGVRFMSHENMTLQRQGSGSNLARQTLMAA
HALNLIPADNARERSYLDGRLGSTSLLGPSELSRVLPQKEITVFVGTWNM
NGHSPPKQLNDFVLPANVEHVPDIVVMGTQESTPDRFEWEVTIQETLGPS
HVLFHATTLGTLHLAVYMRRDLIWYCSVPEDASMSVRTGSAFRTKGAVAI
SFCLFGTSMLFVTSHLTAHQQKVKERVSDVKRIINALDLPRNLPNQRHKN
KDVTQNFDNVFWCGDLNFRLGEPREKLLEWIQNTKFPLPSHLPHGYMHTD
QLTSVLADGAAFRGFMEANITFPPTYKYDPGSQNFDTSSKQRAPAYTDRI
LYKYRQMQGLVIRRQTLVPGVSTPTQPHVQCLLYDSVPSITTSDHKPVWA
LFRTLIRAGTDAIPLAAGLFSRDIYLEGMRRRLNNQYSGASAVCVLQ*
BS15062.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:44:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10426-PB | 747 | CG10426-PB | 1..747 | 1..747 | 3923 | 100 | Plus |
| CG10426-PA | 747 | CG10426-PA | 1..747 | 1..747 | 3923 | 100 | Plus |
| Ocrl-PB | 850 | CG3573-PB | 177..481 | 383..707 | 344 | 30 | Plus |
| Ocrl-PA | 850 | CG3573-PA | 177..481 | 383..707 | 344 | 30 | Plus |
| Synj-PC | 1218 | CG6562-PC | 565..860 | 398..701 | 332 | 32.1 | Plus |
