Clone Sequence Records
BS15063.3prime Sequence
742 bp (731 high quality bases) assembled on 2006-10-23
> BS15063.3prime
ATGGTCTAGAAAGCTTTTAAGTGACGACGGCCGATCGCTTGTCACGATTC
TTTCCACGTGTTATGGAGCGTGCCTTGAATGCAGCAGCATTCACAAGGTG
CCGCTCCAGCTTGGTCGGCTTGACCTTGGCGTTTCCATTGATGCCTGTGT
TCGTGGGTCGTGGTCCCAGCTGGAAGATGTCACGGATGAACTCGTTCTCC
TGCAGCTGCGAGGTCATCCCGGGACCCATGACAGTGCACATGGCCGAATA
CTGATGATGGATGGACCAGGAATCTAGTGTCAGCGACTCGGTACCGAAAC
GAATGCTAATCTCTGGGGAAATGTCCTCCTCCAGGTATCGCAGCACATCA
CGGAAGGTGGCACGCTGGGCCTTGCGATCGCGCTTGGCGCGGTACTTATG
CGAATCCGTGGCCAGCTGCTTGACGGCCTCCGATAACTCAGCGATGTCAT
CTTCTAGGAAATCCTCTTCGTGAGCACGTCCCGACTCCAGAATTAAAGCA
ATGGTCTCGCCAGCGGCCATGCGGACGTCCAAATGTGTAGATTGCAAGAG
ACCCAAGAACTTCTTAATAGATGGAAACATGTTTTGGCCAGTGGTCATCA
ACGAAACAAAATCCCCCGAAGGTATAAGTGTTAGTAGAAGCCCCCAGGCG
TTCAAGGCCTCCGCATGGAAAGTCCCAGCTTCGGCGGTGACGGATACCGG
TGTCTTGTCATCGCCACGCAAATAACTGCCTGCGAAGATGGC
BS15063.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31694-PA | 1278 | CG31694-RA | 553..1278 | 742..17 | 3630 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:22:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31694-RA | 2639 | CG31694-RA | 1370..2096 | 742..16 | 3635 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:22:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2870688..2870932 | 328..572 | 1225 | 100 | Plus |
2L | 23513712 | 2L | 2869323..2869552 | 101..330 | 1150 | 100 | Plus |
2L | 23513712 | 2L | 2871004..2871173 | 573..742 | 850 | 100 | Plus |
2L | 23513712 | 2L | 2869170..2869255 | 16..101 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:22:20 has no hits.
BS15063.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:16:04 Download gff for
BS15063.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31694-PA | 553..1278 | 17..742 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:49:10 Download gff for
BS15063.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31694-PA | 553..1278 | 17..742 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:56:26 Download gff for
BS15063.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31694-RA | 1370..2099 | 12..742 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:55:52 Download gff for
BS15063.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31694-RA | 1370..2099 | 12..742 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:55:52 Download gff for
BS15063.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2869167..2869254 | 12..100 | 97 | <- | Plus |
2L | 2869323..2869550 | 101..328 | 100 | <- | Plus |
2L | 2870689..2870932 | 329..572 | 100 | <- | Plus |
2L | 2871004..2871173 | 573..742 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:56:26 Download gff for
BS15063.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2869167..2869254 | 12..100 | 97 | <- | Plus |
arm_2L | 2869323..2869550 | 101..328 | 100 | <- | Plus |
arm_2L | 2870689..2870932 | 329..572 | 100 | <- | Plus |
arm_2L | 2871004..2871173 | 573..742 | 100 | | Plus |
BS15063.5prime Sequence
852 bp (744 high quality bases) assembled on 2006-10-23
> BS15063.5prime
GAAGTTATCAGTCGACATGCCGCGACGCAACAAGAAATCAGCAGCAGGCA
GAGGCCGCACCAATGACTCCAATTCTGAGGACGAGTCCTTTGACAATGTG
AGCGTTTACTCTCATATGTCCGAAGTCGCATCCTCGGAGGCCACCGACGA
GCTGGCCAATGAGCGTTTCGAGGAGAAGTTCGAGAAGGCCCTGGAACAGG
CCACCGAGAAGTCGGCCCAGACACGTGTGCAGGCTCTGCAAGCGATTTGC
GAACTGCTCATGCACCGCTACATGCCGGACTTCGTGGAGGACCGCAAGAT
GACCCTGATGGATTTCGTGGAGAAGAGCATCCGTCGAGGCAAGGGCCAGG
AGCAGGTGTGGGGCGCACGACTCGCGCCCCTGCTGGTGCTCCAAATGGGC
GGGGATGAAGGCATATCCAAGGCGATGAATCAATTCCTGTTGAACACCGT
TCAGGACAAGTCCGTGGGCTTCGATGCCCGTGCCAAGTGCTGCACAGCTG
TGGGATTGTTGAGCTTCCTGGGCTGCGAGGATGTTGGGGAGTTGGTACAC
CTGATGCAGAGCTTCGAGGCCATCTTCGCAGGCAGTTATTTGCGTGGCGA
TGACAAGACACCGGTATCCGTCACCGCCGAAGCTGGGACTTTCCATGCGG
AGGCCTTGAACGCCTGGGGGCTTCTACTAACACTTATACCTTCGGGGGAT
TTTGTTTCGTTGATGACCACTGGCCAAAACATGTTTCCATCTATTAAGAA
GTTCTTGGGTCTCTTGCAATCTACACATTTGGACGTCCGCATGGCCGCTG
GCGAGACCTTTGCTTTAATTCTGGAATCGGGACGTGCTCACAAAGAGGAT
TT
BS15063.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31694-PA | 1278 | CG31694-RA | 1..836 | 17..852 | 4105 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:17:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31694-RA | 2639 | CG31694-RA | 816..1653 | 15..852 | 4145 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:17:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2871004..2871690 | 738..52 | 3435 | 100 | Minus |
2L | 23513712 | 2L | 2870819..2870932 | 852..739 | 525 | 97.4 | Minus |
2L | 23513712 | 2L | 2873635..2873674 | 54..15 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 21:17:06 has no hits.
BS15063.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:16:05 Download gff for
BS15063.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31694-PA | 1..836 | 17..852 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:49:12 Download gff for
BS15063.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31694-PA | 1..836 | 17..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:41:24 Download gff for
BS15063.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31694-RA | 811..1653 | 9..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:45:08 Download gff for
BS15063.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31694-RA | 811..1653 | 9..852 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:45:08 Download gff for
BS15063.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2870819..2870932 | 739..852 | 97 | <- | Minus |
2L | 2871004..2871688 | 54..738 | 100 | <- | Minus |
2L | 2873636..2873679 | 9..53 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:41:24 Download gff for
BS15063.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2870819..2870932 | 739..852 | 97 | <- | Minus |
arm_2L | 2871004..2871688 | 54..738 | 100 | <- | Minus |
arm_2L | 2873636..2873679 | 9..53 | 95 | | Minus |
BS15063.complete Sequence
1310 bp assembled on 2006-11-01
> BS15063.complete
GAAGTTATCAGTCGACATGCCGCGACGCAACAAGAAATCAGCAGCAGGCA
GAGGCCGCACCAATGACTCCAATTCTGAGGACGAGTCCTTTGACAATGTG
AGCGTTTACTCTCATATGTCCGAAGTCGCATCCTCGGAGGCCACCGACGA
GCTGGCCAATGAGCGTTTCGAGGAGAAGTTCGAGAAGGCCCTGGAACAGG
CCACCGAGAAGTCGGCCCAGACACGTGTGCAGGCTCTGCAAGCGATTTGC
GAACTGCTCATGCACCGCTACATGCCGGACTTCGTGGAGGACCGCAAGAT
GACCCTGATGGATTTCGTGGAGAAGAGCATCCGTCGAGGCAAGGGCCAGG
AGCAGGTGTGGGGCGCACGACTCGCGCCCCTGCTGGTGCTCCAAATGGGC
GGGGATGAAGGCATATCCAAGGCGATGAATCAATTCCTGTTGAACACCGT
TCAGGACAAGTCCGTGGGCTTCGATGCCCGTGCCAAGTGCTGCACAGCTG
TGGGATTGTTGAGCTTCCTGGGCTGCGAGGATGTTGGGGAGTTGGTACAC
CTGATGCAGAGCTTCGAGGCCATCTTCGCAGGCAGTTATTTGCGTGGCGA
TGACAAGACACCGGTATCCGTCACCGCCGAAGCTGGGACTTTCCATGCGG
AGGCCTTGAACGCCTGGGGGCTTCTACTAACACTTATACCTTCGGGGGAT
TTTGTTTCGTTGATGACCACTGGCCAAAACATGTTTCCATCTATTAAGAA
GTTCTTGGGTCTCTTGCAATCTACACATTTGGACGTCCGCATGGCCGCTG
GCGAGACCATTGCTTTAATTCTGGAGTCGGGACGTGCTCACGAAGAGGAT
TTCCTAGAAGATGACATCGCTGAGTTATCGGAGGCCGTCAAGCAGCTGGC
CACGGATTCGCATAAGTACCGCGCCAAGCGCGATCGCAAGGCCCAGCGTG
CCACCTTCCGTGATGTGCTGCGATACCTGGAGGAGGACATTTCCCCAGAG
ATTAGCATTCGTTTCGGTACCGAGTCGCTGACACTAGATTCCTGGTCCAT
CCATCATCAGTATTCGGCCATGTGCACTGTCATGGGTCCCGGGATGACCT
CGCAGCTGCAGGAGAACGAGTTCATCCGTGACATCTTCCAGCTGGGACCA
CGACCCACGAACACAGGCATCAATGGAAACGCCAAGGTCAAGCCGACCAA
GCTGGAGCGGCACCTTGTGAATGCTGCTGCATTCAAGGCACGCTCCATAA
CACGTGGAAAGAATCGTGACAAGCGATCGGCCGTCGTCACTTAAAAGCTT
TCTAGACCAT
BS15063.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:22:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31694-RA | 1278 | CG31694-PA | 1..1278 | 17..1294 | 6390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:22:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31694-RA | 2639 | CG31694-RA | 816..2096 | 15..1295 | 6405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:21:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2871004..2871690 | 738..52 | 3435 | 100 | Minus |
2L | 23513712 | 2L | 2870688..2870932 | 983..739 | 1225 | 100 | Minus |
2L | 23513712 | 2L | 2869323..2869552 | 1210..981 | 1150 | 100 | Minus |
2L | 23513712 | 2L | 2869170..2869255 | 1295..1210 | 430 | 100 | Minus |
2L | 23513712 | 2L | 2873635..2873674 | 54..15 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:21:59 has no hits.
BS15063.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:45 Download gff for
BS15063.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31694-RA | 1..1278 | 17..1294 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:06:25 Download gff for
BS15063.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31694-RA | 840..2128 | 9..1299 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:14 Download gff for
BS15063.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31694-RA | 818..2093 | 17..1292 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:45 Download gff for
BS15063.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31694-RA | 840..2128 | 9..1299 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:07 Download gff for
BS15063.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31694-RA | 818..2093 | 17..1292 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:07 Download gff for
BS15063.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2873636..2873672 | 17..53 | 100 | | Minus |
2L | 2869173..2869254 | 1211..1292 | 100 | <- | Minus |
2L | 2869323..2869550 | 983..1210 | 100 | <- | Minus |
2L | 2870689..2870932 | 739..982 | 100 | <- | Minus |
2L | 2871004..2871688 | 54..738 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:14 Download gff for
BS15063.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2869173..2869254 | 1211..1292 | 100 | <- | Minus |
arm_2L | 2869323..2869550 | 983..1210 | 100 | <- | Minus |
arm_2L | 2870689..2870932 | 739..982 | 100 | <- | Minus |
arm_2L | 2871004..2871688 | 54..738 | 100 | <- | Minus |
arm_2L | 2873636..2873672 | 17..53 | 100 | | Minus |
BS15063.pep Sequence
Translation from 16 to 1293
> BS15063.pep
MPRRNKKSAAGRGRTNDSNSEDESFDNVSVYSHMSEVASSEATDELANER
FEEKFEKALEQATEKSAQTRVQALQAICELLMHRYMPDFVEDRKMTLMDF
VEKSIRRGKGQEQVWGARLAPLLVLQMGGDEGISKAMNQFLLNTVQDKSV
GFDARAKCCTAVGLLSFLGCEDVGELVHLMQSFEAIFAGSYLRGDDKTPV
SVTAEAGTFHAEALNAWGLLLTLIPSGDFVSLMTTGQNMFPSIKKFLGLL
QSTHLDVRMAAGETIALILESGRAHEEDFLEDDIAELSEAVKQLATDSHK
YRAKRDRKAQRATFRDVLRYLEEDISPEISIRFGTESLTLDSWSIHHQYS
AMCTVMGPGMTSQLQENEFIRDIFQLGPRPTNTGINGNAKVKPTKLERHL
VNAAAFKARSITRGKNRDKRSAVVT*
BS15063.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:00:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31694-PA | 425 | CG31694-PA | 1..425 | 1..425 | 2160 | 100 | Plus |