Clone Sequence Records
BS15065.3prime Sequence
859 bp (778 high quality bases) assembled on 2006-10-23
> BS15065.3prime
ATGGTCTAGAAAGCTTTCATTCTGCTTTTATATCTGCCTTAGCCTCTGAA
TCCGTCCTTGACTTGAACTCCATTTGATGGGCATTTGACTCGCTCTCCGG
GTCCTTCGCCTGCAAATAGTCTTCGGCATCCCACGCCTGCTGATCAGTGG
TGCCCCAAATCAGGTACACCAGGTTGCCAATGAAAAAAACCACAGCGGTC
ATGGCAAACACAATCTGCCACTGGCTTCGTGAGTCCGATTCAGTGACAAT
GACTCCCACTAAGAGCGGCGTTAGGAGCGGAAAGATGTTGCCAATGCCAT
TCACTATTGCCATTAGCATTCCAGAATGGTTTGGGGACATGTCGATAATG
GTCAGGATGCTGCCAATCCCAGAGCCAGCATTTAGGCCAGCGTTGATTGT
CATCAGTGCGATGGCCAGAGTTGTCTGGCTCTTATCCAGAAAGCCAATCC
CAATAAGGGCCGCCGCAGGTCCCCAATAGGAAACGGTGTTAATTGACTTG
CGCAGCGTGGTTAGGGACATCCATTGCCTCGACATGGCCACATCTGCGAA
AACCAGGTATACATACGACATACCCCACATGGCCAGAAAGGGCAGGGCCG
AGTAGAGAGCGTTGCTTTTAATGTCCATCTCCAGGACGCCGTGCATGTAG
GACGGTGTCTGCAGTTGCATGGTGGAGTTGGCCCAGCCCTGAGCGCTCCG
TACCACCAACAGTGCGTAGAACGGACTGGATGACCAGATGGCCCGCCACG
GGATTGGAATCTTCTGTGCGTGAAAGCCATCCTGCCGCTTCATAGAGCGC
TCGATGTGCTCCCGTTCCCGGGAACCGATTAGCCGGGAACTGGGCGCGTT
GTTAGCGCC
BS15065.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7881-PA | 1449 | CG7881-RA | 607..1449 | 859..17 | 4215 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:24:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7881-RB | 2807 | CG7881-RB | 754..1596 | 859..17 | 4215 | 100 | Minus |
CG7881-RA | 2084 | CG7881-RA | 754..1596 | 859..17 | 4215 | 100 | Minus |
CG12490-RB | 1647 | CG12490-RB | 876..982 | 646..540 | 220 | 80.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:24:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5961957..5962581 | 235..859 | 3125 | 100 | Plus |
2R | 25286936 | 2R | 5961486..5961705 | 17..236 | 1100 | 100 | Plus |
2R | 25286936 | 2R | 22835849..22835955 | 646..540 | 220 | 80.4 | Minus |
2R | 25286936 | 2R | 22838573..22838686 | 652..539 | 195 | 78.1 | Minus |
2R | 25286936 | 2R | 22833783..22833868 | 646..561 | 190 | 81.4 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:24:16 has no hits.
BS15065.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:16:09 Download gff for
BS15065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7881-PA | 607..1449 | 17..859 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:49:16 Download gff for
BS15065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7881-PA | 607..1449 | 17..859 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:39:39 Download gff for
BS15065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7881-RA | 754..1596 | 17..859 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:31:38 Download gff for
BS15065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7881-RA | 754..1596 | 17..859 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:31:38 Download gff for
BS15065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5961486..5961704 | 17..235 | 100 | <- | Plus |
2R | 5961958..5962581 | 236..859 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:39:39 Download gff for
BS15065.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1848991..1849209 | 17..235 | 100 | <- | Plus |
arm_2R | 1849463..1850086 | 236..859 | 100 | | Plus |
BS15065.5prime Sequence
884 bp (794 high quality bases) assembled on 2006-10-23
> BS15065.5prime
GAAGTTATCAGTCGACATGAGGGACAACGAAAAAGGACCCGTCATCGGCA
TCCGACACATGCAGGCCCTCCTCTTATTCTTGGCCATCGTCGTGAACTAC
ACAGCCCGGCTCAGCGTTAGCGTAGCAATAGTTGCTATGACGGATGCGGC
CACTACTAACTTGGACTTTCCTGAGTACAACTGGAATGGTGTGCAGCAAT
CATACATTCTGTCCAGCTTCTACTGGGGATACATCGTCACTCAATTTCCA
GCCGGTTTTCTCGTTCGCCGCTTCGGGGCTAAGGCGGTGCTGCTCGTCCC
CACGCTGGCTACGGCCGTCCTGAGCGGTCTCACACCGTATTGCGTGGCCT
GGGGTGGCTGGCAGGCTTTTTGCACCATCCGGATTGTGGAGGGTCTTTTT
CAAGGTCTAATCTTTCCGTGCATACATGAGCACCTGGCCAAGTGGTCTCC
GCCAGAGGATCGAAACCGACTGGGCGCCTTTGCGTACTCTGGAGCCGACT
GCGGATCAGTGCTGGCCATGGCTAGCAGCGGTCTTATTGCGAATGGATCA
ATGGGCTGGCCTGGAATTTTCTACGTGTCGGCGGGCACTTGCGGGCTGTG
GTGCCTACTGTGGGTGCTATTCGGCGCTAACAACGCGCCCAGTTCCCGGC
TAATCGGTTCCCGGGAACGGGAGCACATCGAGCGCTCTATGAAGCGGCAG
GATGGCTTTCACGCACAGAAGATTCCAATCCCGTGGCGGGCCATCTGGTC
ATCCAGTCCGTTCTACGCACTGTTGGTGGTACGGAGCGCTCANGGCTGGG
GCAACTCCACCATGCAACTGCAGACACCGTCCTACATGCACGGCGTCCTG
GAGATGGACATAAAAGCAACGCTCTCTACTCGGC
BS15065.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7881-PA | 1449 | CG7881-RA | 1..845 | 17..861 | 4181 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:06:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7881-RB | 2807 | CG7881-RB | 148..1016 | 17..884 | 4294 | 99.7 | Plus |
CG7881-RA | 2084 | CG7881-RA | 148..1016 | 17..884 | 4294 | 99.7 | Plus |
CG9826-RC | 2096 | CG9826-RC | 431..662 | 348..579 | 290 | 76.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:06:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5962319..5963031 | 884..173 | 3489 | 99.6 | Minus |
2R | 25286936 | 2R | 5963093..5963232 | 173..34 | 700 | 100 | Minus |
2R | 25286936 | 2R | 22841231..22841462 | 348..579 | 260 | 74.1 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:06:47 has no hits.
BS15065.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:16:10 Download gff for
BS15065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7881-PA | 1..869 | 17..884 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:49:17 Download gff for
BS15065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7881-PA | 1..869 | 17..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:50:25 Download gff for
BS15065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7881-RA | 140..1016 | 8..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:24:58 Download gff for
BS15065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7881-RA | 140..1016 | 8..884 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:24:58 Download gff for
BS15065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5962319..5963031 | 173..884 | 99 | <- | Minus |
2R | 5963094..5963230 | 36..172 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:50:25 Download gff for
BS15065.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1849824..1850536 | 173..884 | 99 | <- | Minus |
arm_2R | 1850599..1850735 | 36..172 | 100 | <- | Minus |
BS15065.complete Sequence
1481 bp assembled on 2006-11-01
GenBank Submission: FJ637865
> BS15065.complete
GAAGTTATCAGTCGACATGAGGGACAACGAAAAAGGACCCGTCATCGGCA
TCCGACACATGCAGGCCCTCCTCTTATTCTTGGCCATCGTCGTGAACTAC
ACAGCCCGGCTCAGCGTTAGCGTAGCAATAGTTGCTATGACGGATGCGGC
CACTACTAACTTGGACTTTCCTGAGTACAACTGGAATGGTGTGCAGCAAT
CATACATTCTGTCCAGCTTCTACTGGGGATACATCGTCACTCAATTTCCA
GCCGGTTTTCTCGTTCGCCGCTTCGGGGCTAAGGCGGTGCTGCTCGTCCC
CACGCTGGCTACGGCCGTCCTGAGCGGTCTCACACCGTATTGCGTGGCCT
GGGGTGGCTGGCAGGCTTTTTGCACCATCCGGATTGTGGAGGGTCTTTTT
CAAGGTCTAATCTTTCCGTGCATACATGAGCACCTGGCCAAGTGGTCTCC
GCCAGAGGATCGAAACCGACTGGGCGCCTTTGCGTACTCTGGAGCCGACT
GCGGATCAGTGCTGGCCATGGCTAGCAGCGGTCTTATTGCGAATGGATCA
ATGGGCTGGCCTGGAATTTTCTACGTGTCGGCGGGCACTTGCGGGCTGTG
GTGCCTACTGTGGGTGCTATTCGGCGCTAACAACGCGCCCAGTTCCCGGC
TAATCGGTTCCCGGGAACGGGAGCACATCGAGCGCTCTATGAAGCGGCAG
GATGGCTTTCACGCACAGAAGATTCCAATCCCGTGGCGGGCCATCTGGTC
ATCCAGTCCGTTCTACGCACTGTTGGTGGTACGGAGCGCTCAGGGCTGGG
CCAACTCCACCATGCAACTGCAGACACCGTCCTACATGCACGGCGTCCTG
GAGATGGACATTAAAAGCAACGCTCTCTACTCGGCCCTGCCCTTTCTGGC
CATGTGGGGTATGTCGTATGTATACCTGGTTTTCGCAGATGTGGCCATGT
CGAGGCAATGGATGTCCCTAACCACGCTGCGCAAGTCAATTAACACCGTT
TCCTATTGGGGACCTGCGGCGGCCCTTATTGGGATTGGCTTTCTGGATAA
GAGCCAGACAACTCTGGCCATCGCACTGATGACAATCAACGCTGGCCTAA
ATGCTGGCTCTGGGATTGGCAGCATCCTGACCATTATCGACATGTCCCCA
AACCATTCTGGAATGCTAATGGCAATAGTGAATGGCATTGGCAACATCTT
TCCGCTCCTAACGCCGCTCTTAGTGGGAGTCATTGTCACTGAATCGGACT
CACGAAGCCAGTGGCAGATTGTGTTTGCCATGACCGCTGTGGTTTTTTTC
ATTGGCAACCTGGTGTACCTGATTTGGGGCACCACTGATCAGCAGGCGTG
GGATGCCGAAGACTATTTGCAGGCGAAGGACCCGGAGAGCGAGTCAAATG
CCCATCAAATGGAGTTCAAGTCAAGGACGGATTCAGAGGCTAAGGCAGAT
ATAAAAGCAGAATGAAAGCTTTCTAGACCAT
BS15065.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:14:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7881-RB | 1449 | CG7881-PB | 1..1449 | 17..1465 | 7245 | 100 | Plus |
CG7881-RA | 1449 | CG7881-PA | 1..1449 | 17..1465 | 7245 | 100 | Plus |
CG9826-RC | 1488 | CG9826-PC | 335..566 | 348..579 | 260 | 74.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:14:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7881-RB | 2807 | CG7881-RB | 148..1596 | 17..1465 | 7245 | 100 | Plus |
CG7881-RA | 2084 | CG7881-RA | 148..1596 | 17..1465 | 7245 | 100 | Plus |
CG9826-RC | 2096 | CG9826-RC | 431..662 | 348..579 | 260 | 74.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:14:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5961957..5963031 | 1247..173 | 5375 | 100 | Minus |
2R | 25286936 | 2R | 5961486..5961705 | 1465..1246 | 1100 | 100 | Minus |
2R | 25286936 | 2R | 5963093..5963232 | 173..34 | 700 | 100 | Minus |
2R | 25286936 | 2R | 22841231..22841462 | 348..579 | 260 | 74.1 | Plus |
2R | 25286936 | 2R | 22835849..22835955 | 836..942 | 220 | 80.4 | Plus |
2R | 25286936 | 2R | 22838573..22838686 | 830..943 | 195 | 78.1 | Plus |
2R | 25286936 | 2R | 22833783..22833868 | 836..921 | 190 | 81.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:14:26 has no hits.
BS15065.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:46 Download gff for
BS15065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7881-RA | 1..1449 | 17..1465 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:06:28 Download gff for
BS15065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7881-RA | 120..1576 | 8..1465 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:42 Download gff for
BS15065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7881-RA | 148..1595 | 17..1464 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:46 Download gff for
BS15065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7881-RA | 120..1576 | 8..1465 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:06:26 Download gff for
BS15065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7881-RA | 148..1595 | 17..1464 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:06:26 Download gff for
BS15065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5961487..5961704 | 1247..1464 | 100 | <- | Minus |
2R | 5961958..5963031 | 173..1246 | 100 | <- | Minus |
2R | 5963094..5963230 | 36..172 | 100 | <- | Minus |
2R | 5966691..5966709 | 17..35 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:42 Download gff for
BS15065.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1848992..1849209 | 1247..1464 | 100 | <- | Minus |
arm_2R | 1849463..1850536 | 173..1246 | 100 | <- | Minus |
arm_2R | 1850599..1850735 | 36..172 | 100 | <- | Minus |
arm_2R | 1854196..1854214 | 17..35 | 100 | | Minus |
BS15065.pep Sequence
Translation from 16 to 1464
> BS15065.pep
MRDNEKGPVIGIRHMQALLLFLAIVVNYTARLSVSVAIVAMTDAATTNLD
FPEYNWNGVQQSYILSSFYWGYIVTQFPAGFLVRRFGAKAVLLVPTLATA
VLSGLTPYCVAWGGWQAFCTIRIVEGLFQGLIFPCIHEHLAKWSPPEDRN
RLGAFAYSGADCGSVLAMASSGLIANGSMGWPGIFYVSAGTCGLWCLLWV
LFGANNAPSSRLIGSREREHIERSMKRQDGFHAQKIPIPWRAIWSSSPFY
ALLVVRSAQGWANSTMQLQTPSYMHGVLEMDIKSNALYSALPFLAMWGMS
YVYLVFADVAMSRQWMSLTTLRKSINTVSYWGPAAALIGIGFLDKSQTTL
AIALMTINAGLNAGSGIGSILTIIDMSPNHSGMLMAIVNGIGNIFPLLTP
LLVGVIVTESDSRSQWQIVFAMTAVVFFIGNLVYLIWGTTDQQAWDAEDY
LQAKDPESESNAHQMEFKSRTDSEAKADIKAE*
BS15065.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:29:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7881-PB | 482 | CG7881-PB | 1..482 | 1..482 | 2521 | 100 | Plus |
CG7881-PA | 482 | CG7881-PA | 1..482 | 1..482 | 2521 | 100 | Plus |
CG9826-PC | 495 | CG9826-PC | 7..459 | 6..458 | 1537 | 59.8 | Plus |
CG9826-PA | 495 | CG9826-PA | 7..459 | 6..458 | 1537 | 59.8 | Plus |
CG9825-PA | 485 | CG9825-PA | 4..484 | 3..481 | 1465 | 54.9 | Plus |