Clone Sequence Records
BS15067.complete Sequence
890 bp assembled on 2010-02-09
GenBank Submission: KX806471
> BS15067.complete
GAAGTTATCAGTCGACATGTCGTATCGCCGTAGTCAAACAATCTGTCGCT
TCCATTTGCTTGGAATTTGTCGTTTTGGTGATTTATGCCGATTCTCGCAC
GACGAGACGACACCAAATGACAACCAGAGTCCGCAGATATCGGAAATCGC
GGATGAAGTCGTGGAGAATGAGCAAGTGGTGGCCTCCACCAGTAGCTACA
GTCGCCAGATGACCTGGGCAAATGCACCAGAGTTTGTTCCCAGGTACAAA
GCCAATTCTGCCGATTTCCAAGCAACTGAAGGTGTCCAGGATATTTGTCC
ATATGGTGGCAGCTGTATCTGGGGCAGTAAGTGCTCGTATCCACTTCACA
TGGAGATTTGCAAGATGTGCGACCTTTACTGCCTCCACCCGATGGATCAG
AACCAACGCCGTGCGCACAATCGTGAGTGTCTGGAGCAGCACGAGCAGGC
GATGGAGCTATCTTTTGCAATAGCCAGATCCAAGGACAAGATGTGCGGCA
TTTGTTTCGATACCGTCGTGGAGAAGAAGGGACGTGAACGTCGCTTTGGC
ATCTTGTCCAAGTGCAAGCACATATTCTGTTTGACGTGCATTCGCACATG
GCGTCAGGCCCATCAATTTGAGGCCACTGTGACGCGTGGTTGCCCCGAAT
GTCGCGTCTTTTCGGAATTCGTGTGCCCTAGTGCCTACTGGGTGGATACA
AAGGAGGAGAAGGACAAGTTGCTAAGCGAATATCGCGCGGCAATGGGCGC
CAAGGATTGCAAGTACTTCAATGGGGGCTTGGGCAAATGTCCCTTTGGAA
ACAAGTGCTTCTACAGGCACCATCGTCGTTGTGACGATAACCAGACACAA
TCAAATGCCGTCAATTCAGACTGAAAGCTTTCTAGACCAT
BS15067.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:28:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5347-RA | 858 | CG5347-PA | 1..858 | 17..874 | 4290 | 100 | Plus |
CG5334-RA | 633 | CG5334-PA | 200..568 | 447..815 | 1425 | 92.4 | Plus |
Mkrn1-RC | 1161 | CG7184-PC | 491..966 | 345..820 | 745 | 77.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:28:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5347-RA | 1210 | CG5347-RA | 105..962 | 17..874 | 4290 | 100 | Plus |
CG5334-RA | 992 | CG5334-RA | 251..619 | 447..815 | 1425 | 92.4 | Plus |
Mkrn1-RC | 2229 | CG7184-RC | 696..1171 | 345..820 | 745 | 77.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:27:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14776878..14777735 | 17..874 | 4290 | 100 | Plus |
X | 23542271 | X | 14775558..14775926 | 447..815 | 1425 | 92.4 | Plus |
3L | 28110227 | 3L | 21532353..21532630 | 622..345 | 460 | 77.7 | Minus |
3L | 28110227 | 3L | 21531848..21532028 | 820..640 | 320 | 78.5 | Minus |
3L | 28110227 | 3L | 18722609..18722851 | 715..473 | 270 | 74.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:27:59 has no hits.
BS15067.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:11:27 Download gff for
BS15067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5347-RA | 105..961 | 17..873 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:50 Download gff for
BS15067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5347-RA | 105..961 | 17..873 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:02:50 Download gff for
BS15067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5347-RA | 105..961 | 17..873 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:29:26 Download gff for
BS15067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5347-RA | 105..961 | 17..873 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:29:26 Download gff for
BS15067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14776878..14777734 | 17..873 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:50 Download gff for
BS15067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14670911..14671767 | 17..873 | 100 | | Plus |
BS15067.3prime Sequence
860 bp (780 high quality bases) assembled on 2006-10-23
> BS15067.3prime
ATGGTCTAGAAAGCTTTCAGTCTGAATTGACGGCATTTGATTGTGTCTGG
TTATCGTCACAACGACGATGGTGCCTGTAGAAGCACTTGTTTCCAAAGGG
ACATTTGCCCAAGCCCCCATTGAAGTACTTGCAATCCTTGGCGCCCATTG
CCGCGCGATATTCGCTTAGCAACTTGTCCTTCTCCTCCTTTGTATCCACC
CAGTAGGCACTAGGGCACACGAATTCCGAAAAGACGCGACATTCGGGGCA
ACCACGCGTCACAGTGGCCTCAAATTGATGGGCCTGACGCCATGTGCGAA
TGCACGTCAAACAGAATATGTGCTTGCACTTGGACAAGATGCCAAAGCGA
CGTTCACGTCCCTTCTTCTCCACGACGGTATCGAAACAAATGCCGCACAT
CTTGTCCTTGGATCTGGCTATTGCAAAAGATAGCTCCATCGCCTGCTCGT
GCTGCTCCAGACACTCACGATTGTGCGCACGGCGTTGGTTCTGATCCATC
GGGTGGAGGCAGTAAAGGTCGCACATCTTGCAAATCTCCATGTGAAGTGG
ATACGAGCACTTACTGCCCCAGATACAGCTGCCACCATATGGACAAATAT
CCTGGACACCTTCAGTTGCTTGGAAATCGGCAGAATTGGCTTTGTACCTG
GGAACAAACTCTGGTGCATTTGCCCAGGTCATCTGGCGACTGTAGCTACT
GGTGGAGGCCACCACTTGCTCATTCTCCACGACTTCATCCGCGATTTCCG
ATATCTGCGGACTCTGGTTGTCATTTGGTGTCGTCTCGTCGTGCGAGAAT
CGGCATAAATCACCAAAACGACAAATTCCAAGCAAATGGAAGCGACAGAT
TGTTTGACTA
BS15067.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5347-PA | 858 | CG5347-RA | 15..858 | 860..17 | 4220 | 100 | Minus |
CG5334-PA | 633 | CG5334-RA | 381..553 | 263..91 | 815 | 98.8 | Minus |
CG5334-PA | 633 | CG5334-RA | 209..363 | 435..281 | 450 | 91.6 | Minus |
CG7184-PA | 1161 | Mkrn1-RA | 709..756 | 328..281 | 140 | 91.6 | Minus |
CG7184-PB | 1161 | Mkrn1-RB | 709..756 | 328..281 | 140 | 91.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:17:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5347-RA | 1210 | CG5347-RA | 119..962 | 860..17 | 4220 | 100 | Minus |
CG5334-RA | 992 | CG5334-RA | 251..619 | 444..76 | 1425 | 92.4 | Minus |
Mkrn1-RC | 2229 | CG7184-RC | 696..1171 | 546..71 | 745 | 77.4 | Minus |
CG5334-RA | 992 | CG5334-RA | 81..202 | 851..727 | 245 | 82.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:17:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14776892..14777735 | 860..17 | 4220 | 100 | Minus |
X | 23542271 | X | 14775558..14775926 | 444..76 | 1425 | 92.4 | Minus |
3L | 28110227 | 3L | 21532353..21532630 | 269..546 | 460 | 77.7 | Plus |
3L | 28110227 | 3L | 21531848..21532028 | 71..251 | 320 | 78.5 | Plus |
3L | 28110227 | 3L | 18722609..18722851 | 176..418 | 270 | 74.1 | Plus |
Blast to na_te.dros performed on 2015-02-04 21:17:25 has no hits.
BS15067.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:16:11 Download gff for
BS15067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5347-PA | 16..858 | 17..859 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:49:19 Download gff for
BS15067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5347-PA | 16..858 | 17..859 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:41:31 Download gff for
BS15067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5347-RA | 120..967 | 12..859 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:45:13 Download gff for
BS15067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5347-RA | 120..967 | 12..859 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:45:13 Download gff for
BS15067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14776893..14777740 | 12..859 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:41:31 Download gff for
BS15067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14670926..14671773 | 12..859 | 99 | | Minus |
BS15067.5prime Sequence
883 bp (753 high quality bases) assembled on 2006-10-23
> BS15067.5prime
GAAGTTATCCTTCGACATGTCGTATCGCCGTAGTCAAACAATCTGTCGCT
TCCATTTGCTTGGAATTTGTCGTTTTGGTGATTTATGCCGATTCTCGCAC
GACGAGACGACACCAAATGACAACCAGAGTCCGCAGATATCGGAAATCGC
GGATGAAGTCGTGGAGAATGAGCAAGTGGTGGCCTCCACCAGTAGCTACA
GTCGCCAGATGACCTGGGCAAATGCACCAGAGTTTGTTCCCAGGTACAAA
GCCAATTCTGCCGATTTCCAAGCAACTGAAGGTGTCCAGGATATTTGTCC
ATATGGTGGCAGCTGTATCTGGGGCAGTAAGTGCTCGTATCCACTTCACA
TGGAGATTTGCAAGATGTGCGACCTTTACTGCCTCCACCCGATGGATCAG
AACCAACGCCGTGCGCACAATCGTGAGTGTCTGGAGCAGCACGAGCAGGC
GATGGAGCTATCTTTTGCAATAGCCAGATCCAAGGACAAGATGTGCGGCA
TTTGTTTCGATACCGTCGTGGAGAAGAAGGGACGTGAACGTCGCTTTGGC
ATCTTGTCCAAGTGCAAGCACATATTCTGTTTGACGTGCATTCGCACATG
GCGTCAGGCCCATCAATTTGAGGCCACTGTGACGCGTGGTTGCCCCGAAT
GTCGCGTCTTTTCGGAATTCGTGTGCCCTAGTGCCTACTGGGTGGATACA
AAGGAGGAGAAGGACAAGTTGCTAAGCGAATATCGCGCGGCAATGGGCGC
CAAGGATTGCAAGTACTTCAATGGGGGCTTGGGCAAATGTCCCTTTGGAA
ACAAGTGCTTCTACAGGCACCATCGTCGTTGTGACGATAACCAGACACAA
TCAAATGCCGTCAATTCAGACTGAAAGTTTTCT
BS15067.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5347-PA | 858 | CG5347-RA | 1..858 | 17..874 | 4290 | 100 | Plus |
CG5334-PA | 633 | CG5334-RA | 381..553 | 628..800 | 815 | 98.8 | Plus |
CG5334-PA | 633 | CG5334-RA | 209..363 | 456..610 | 450 | 91.6 | Plus |
CG7184-PA | 1161 | Mkrn1-RA | 709..756 | 563..610 | 140 | 91.6 | Plus |
CG7184-PB | 1161 | Mkrn1-RB | 709..756 | 563..610 | 140 | 91.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:52:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5347-RA | 1210 | CG5347-RA | 105..962 | 17..874 | 4290 | 100 | Plus |
CG5334-RA | 992 | CG5334-RA | 251..619 | 447..815 | 1425 | 92.4 | Plus |
Mkrn1-RC | 2229 | CG7184-RC | 696..1171 | 345..820 | 745 | 77.4 | Plus |
CG5334-RA | 992 | CG5334-RA | 81..202 | 40..164 | 245 | 82.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:52:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14776878..14777735 | 17..874 | 4290 | 100 | Plus |
X | 23542271 | X | 14775558..14775926 | 447..815 | 1425 | 92.4 | Plus |
3L | 28110227 | 3L | 21532353..21532630 | 622..345 | 460 | 77.7 | Minus |
3L | 28110227 | 3L | 21531848..21532028 | 820..640 | 320 | 78.5 | Minus |
3L | 28110227 | 3L | 18722609..18722851 | 715..473 | 270 | 74.1 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:52:18 has no hits.
BS15067.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:16:12 Download gff for
BS15067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5347-PA | 1..858 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:49:20 Download gff for
BS15067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5347-PA | 1..858 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 06:29:36 Download gff for
BS15067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5347-RA | 105..962 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:02:39 Download gff for
BS15067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5347-RA | 105..962 | 17..874 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:02:39 Download gff for
BS15067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14776878..14777735 | 17..874 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 06:29:36 Download gff for
BS15067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14670911..14671768 | 17..874 | 100 | | Plus |
BS15067.pep Sequence
Translation from 16 to 873
> BS15067.pep
MSYRRSQTICRFHLLGICRFGDLCRFSHDETTPNDNQSPQISEIADEVVE
NEQVVASTSSYSRQMTWANAPEFVPRYKANSADFQATEGVQDICPYGGSC
IWGSKCSYPLHMEICKMCDLYCLHPMDQNQRRAHNRECLEQHEQAMELSF
AIARSKDKMCGICFDTVVEKKGRERRFGILSKCKHIFCLTCIRTWRQAHQ
FEATVTRGCPECRVFSEFVCPSAYWVDTKEEKDKLLSEYRAAMGAKDCKY
FNGGLGKCPFGNKCFYRHHRRCDDNQTQSNAVNSD*
BS15067.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:11:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5347-PA | 285 | CG5347-PA | 1..285 | 1..285 | 1588 | 100 | Plus |
Mkrn1-PC | 386 | CG7184-PC | 14..322 | 1..268 | 901 | 56.6 | Plus |
Mkrn1-PB | 386 | CG7184-PB | 14..322 | 1..268 | 901 | 56.6 | Plus |
Mkrn1-PA | 386 | CG7184-PA | 14..322 | 1..268 | 901 | 56.6 | Plus |
CG5334-PA | 210 | CG5334-PA | 67..208 | 144..285 | 611 | 76.1 | Plus |