Clone Sequence Records
BS15068.3prime Sequence
817 bp (815 high quality bases) assembled on 2006-10-23
> BS15068.3prime
ATGGTCTAGAAAGCTTCTAGTAGAAATTGTGGTTTGGATTGTATTGTTCC
TTGATGGAACAGAGTGCGGGATACTCTGGATTACTTCCCGTCCGGCATTC
AGAGGCGGGCTTTCCGGCATTGTAAACAGGAACTCCGATGGCATAGACAC
TGGCATAGTTGCAGGCAGTATTGTAGATGTAGAGGAAGGGGTACTGCGGA
TTGGTGAAGCGCATCATGGCACAGCCCACATGGGTGTTCCTGTCCAGCAC
GGTTTCCACAAAGTGTCCATACTTTTCGAGGTCTTTGGTCAGCTTAAAAT
CGGTAATGTAACTGCTGTCGATGAGTTTGTGCTCTCCAAACCACAAGCCC
ATCGACTGCTCCACCAGATTGGTCACGTTCAAGTCCCAGTTCCTCCGACG
ATCGACACCGCAGAGATTCTGACCCAGATTCCGGAAGCGGTAGCTGTTGT
GGCAGTCGTCGTGCTCCAGGTAACAGGTTTTCAGGTTCAACGTGGCCAGG
TACTCCAGCTCCTCATCCCACACCATGGTGGCCATGCGGGTGGCCGGATA
GTAGCCGGGCAAAGATCCAGAGGCAATGTAGTTCCTGCGCTTGTTGTGCT
CATTCACGATAAGTTTGCGATAAGGCTTCAGGTCCACCATAGTGGCATCC
GGGGAGCAGCTTTCATGGAATTTACCATCGTTATTACACGCTATGTGCAC
CGTGTTGTCAGGACATAAGTCCGGATCACACCAGGACAGGGGCTGAGAAC
TGGCCATACCCAGGATGATCAACAGACAACCGACCGTTTGAAATCTACCG
TACTCCATGTCGACTGA
BS15068.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9822-PA | 792 | CG9822-RA | 1..792 | 808..17 | 3960 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:16:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9822-RA | 883 | CG9822-RA | 36..829 | 810..17 | 3970 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:16:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21347260..21347654 | 279..673 | 1975 | 100 | Plus |
2R | 25286936 | 2R | 21346929..21347190 | 17..278 | 1310 | 100 | Plus |
2R | 25286936 | 2R | 21347712..21347848 | 674..810 | 685 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:16:09 has no hits.
BS15068.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:16:13 Download gff for
BS15068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9822-PA | 1..792 | 17..808 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:49:22 Download gff for
BS15068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9822-PA | 1..792 | 17..808 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:53:18 Download gff for
BS15068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9822-RA | 30..831 | 12..816 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:20:45 Download gff for
BS15068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9822-RA | 30..831 | 12..816 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:20:45 Download gff for
BS15068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21346927..21347190 | 12..278 | 98 | <- | Plus |
2R | 21347260..21347654 | 279..673 | 100 | <- | Plus |
2R | 21347712..21347854 | 674..816 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:53:18 Download gff for
BS15068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17234432..17234695 | 12..278 | 98 | <- | Plus |
arm_2R | 17234765..17235159 | 279..673 | 100 | <- | Plus |
arm_2R | 17235217..17235359 | 674..816 | 98 | | Plus |
BS15068.5prime Sequence
822 bp (805 high quality bases) assembled on 2006-10-23
> BS15068.5prime
GAAGTTATCCTTCGACATGGAGTACGGTAGATTTCAAACGGTCGGTTGTC
TGTTGATCATCCTGGGTATGGCCAGTTCTCAGCCCCTGTCCTGGTGTGAT
CCGGACTTATGTCCTGACAACACGGTGCACATAGCGTGTAATAACGATGG
TAAATTCCATGAAAGCTGCTCCCCGGATGCCACTATGGTGGACCTGAAGC
CTTATCGCAAACTTATCGTGAATGAGCACAACAAGCGCAGGAACTACATT
GCCTCTGGATCTTTGCCCGGCTACTATCCGGCCACCCGCATGGCCACCAT
GGTGTGGGATGAGGAGCTGGAGTACCTGGCCACGTTGAACCTGAAAACCT
GTTACCTGGAGCACGACGACTGCCACAACAGCTACCGCTTCCGGAATCTG
GGTCAGAATCTCTGCGGTGTCGATCGTCGGAGGAACTGGGACTTGAACGT
GACCAATCTGGTGGAGCAGTCGATGGGCTTGTGGTTTGGAGAGCACAAAC
TCATCGACAGCAGTTACATTACCGATTTTAAGCTGACCAAAGACCTCGAA
AAGTATGGACACTTTGTGGAAACCGTGCTGGACAGGAACACCCATGTGGG
CTGTGCCATGATGCGCTTCACCAATCCGCAGTACCCCTTCCTCTACATCT
ACAATACTGCCTGCAACTATGCCAGTGTCTATGCCATCGGAGTTCCTGTT
TACAATGCCGGAAAGCCCGCCTCTGAATGCCGGACGGGAAGTAATCCAGA
GTATCCCGCACTCTGTTCCATCAAGGAACAATACAATCCAAACCACAATT
TCTACTAGAAGCTTTCTAGACC
BS15068.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9822-PA | 792 | CG9822-RA | 1..792 | 17..808 | 3960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:05:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9822-RA | 883 | CG9822-RA | 36..829 | 15..808 | 3970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:05:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21347260..21347654 | 546..152 | 1975 | 100 | Minus |
2R | 25286936 | 2R | 21346929..21347190 | 808..547 | 1310 | 100 | Minus |
2R | 25286936 | 2R | 21347712..21347848 | 151..15 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:05:12 has no hits.
BS15068.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:16:14 Download gff for
BS15068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9822-PA | 1..792 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:49:24 Download gff for
BS15068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9822-PA | 1..792 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:49:47 Download gff for
BS15068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9822-RA | 27..831 | 7..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:20:24 Download gff for
BS15068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9822-RA | 27..831 | 7..813 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:20:24 Download gff for
BS15068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21347260..21347654 | 152..546 | 100 | <- | Minus |
2R | 21346927..21347190 | 547..813 | 98 | <- | Minus |
2R | 21347712..21347857 | 7..151 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:49:47 Download gff for
BS15068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17234432..17234695 | 547..813 | 98 | <- | Minus |
arm_2R | 17234765..17235159 | 152..546 | 100 | <- | Minus |
arm_2R | 17235217..17235362 | 7..151 | 97 | | Minus |
BS15068.complete Sequence
824 bp assembled on 2006-11-01
GenBank Submission: FJ637866
> BS15068.complete
GAAGTTATCAGTCGACATGGAGTACGGTAGATTTCAAACGGTCGGTTGTC
TGTTGATCATCCTGGGTATGGCCAGTTCTCAGCCCCTGTCCTGGTGTGAT
CCGGACTTATGTCCTGACAACACGGTGCACATAGCGTGTAATAACGATGG
TAAATTCCATGAAAGCTGCTCCCCGGATGCCACTATGGTGGACCTGAAGC
CTTATCGCAAACTTATCGTGAATGAGCACAACAAGCGCAGGAACTACATT
GCCTCTGGATCTTTGCCCGGCTACTATCCGGCCACCCGCATGGCCACCAT
GGTGTGGGATGAGGAGCTGGAGTACCTGGCCACGTTGAACCTGAAAACCT
GTTACCTGGAGCACGACGACTGCCACAACAGCTACCGCTTCCGGAATCTG
GGTCAGAATCTCTGCGGTGTCGATCGTCGGAGGAACTGGGACTTGAACGT
GACCAATCTGGTGGAGCAGTCGATGGGCTTGTGGTTTGGAGAGCACAAAC
TCATCGACAGCAGTTACATTACCGATTTTAAGCTGACCAAAGACCTCGAA
AAGTATGGACACTTTGTGGAAACCGTGCTGGACAGGAACACCCATGTGGG
CTGTGCCATGATGCGCTTCACCAATCCGCAGTACCCCTTCCTCTACATCT
ACAATACTGCCTGCAACTATGCCAGTGTCTATGCCATCGGAGTTCCTGTT
TACAATGCCGGAAAGCCCGCCTCTGAATGCCGGACGGGAAGTAATCCAGA
GTATCCCGCACTCTGTTCCATCAAGGAACAATACAATCCAAACCACAATT
TCTACTAGAAGCTTTCTAGACCAT
BS15068.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:16:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9822-RA | 792 | CG9822-PA | 1..792 | 17..808 | 3960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9822-RA | 883 | CG9822-RA | 36..829 | 15..808 | 3970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21347260..21347654 | 546..152 | 1975 | 100 | Minus |
2R | 25286936 | 2R | 21346929..21347190 | 808..547 | 1310 | 100 | Minus |
2R | 25286936 | 2R | 21347712..21347848 | 151..15 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:16:56 has no hits.
BS15068.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:47 Download gff for
BS15068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9822-RA | 1..792 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:06:29 Download gff for
BS15068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9822-RA | 2..799 | 14..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:44:56 Download gff for
BS15068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9822-RA | 38..829 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:47 Download gff for
BS15068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9822-RA | 2..797 | 14..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:49:46 Download gff for
BS15068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9822-RA | 38..829 | 17..808 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:46 Download gff for
BS15068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21346929..21347190 | 547..808 | 100 | <- | Minus |
2R | 21347260..21347654 | 152..546 | 100 | <- | Minus |
2R | 21347712..21347846 | 17..151 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:44:56 Download gff for
BS15068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17234434..17234695 | 547..808 | 100 | <- | Minus |
arm_2R | 17234765..17235159 | 152..546 | 100 | <- | Minus |
arm_2R | 17235217..17235351 | 17..151 | 100 | | Minus |
BS15068.pep Sequence
Translation from 16 to 807
> BS15068.pep
MEYGRFQTVGCLLIILGMASSQPLSWCDPDLCPDNTVHIACNNDGKFHES
CSPDATMVDLKPYRKLIVNEHNKRRNYIASGSLPGYYPATRMATMVWDEE
LEYLATLNLKTCYLEHDDCHNSYRFRNLGQNLCGVDRRRNWDLNVTNLVE
QSMGLWFGEHKLIDSSYITDFKLTKDLEKYGHFVETVLDRNTHVGCAMMR
FTNPQYPFLYIYNTACNYASVYAIGVPVYNAGKPASECRTGSNPEYPALC
SIKEQYNPNHNFY*
BS15068.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:29:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9822-PA | 263 | CG9822-PA | 1..263 | 1..263 | 1464 | 100 | Plus |
CG17974-PA | 259 | CG17974-PA | 13..258 | 14..259 | 799 | 56.1 | Plus |
CG32679-PA | 254 | CG32679-PA | 14..250 | 12..259 | 436 | 40.6 | Plus |
CG6628-PA | 277 | CG6628-PA | 24..260 | 19..256 | 435 | 41.1 | Plus |
Ag5r-PC | 256 | CG9538-PC | 4..256 | 6..263 | 419 | 36.9 | Plus |