Clone BS15075 Report

Search the DGRC for BS15075

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:150
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptCpr78E-RA
Protein status:BS15075.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15075.3prime Sequence

444 bp (444 high quality bases) assembled on 2006-10-23

> BS15075.3prime
ATGGTCTAGAAAGCTTTTAGACCTTAGGAGGCTTAGCATAGTCAAGATCT
GGTTGGGGCACCTGCTCGCTGACCTGCTTGGCGGCCAGCGAAATCTGGGG
CAGGATTGCTCCGCCCTCTGGTACAAATCCGTGGTCATCGGCCTTGTAGG
TGACGGTCACCTCCTGTCCGTTGGCATCGAAGTAGGAGTAGGAGCCGCTG
ATCTCCAGGTACTCGTTCTCGGTGCCTTGGTTTCTGACCACGGCCTCCTC
CCTTCTGTGGGTGCCGTCCTCGCCGAGGTAAGAGAAGTTGTACGATCCAT
CCTCGTGCTTTTCGTGAGATGATTCGAGAATGGCCACCGGTGGCTGGGTG
GTGGATGTGACGTGGTCCACTGGAGCACTCAGCACGACGGCCGTGCAAAG
GGACAGGGCGACGATGAGAATCTTAAACATGTCGACTGATAACT

BS15075.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG7160-PA 414 CG7160-RA 1..414 430..17 2070 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:27:35
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr78E-RA 463 CG7160-RA 24..438 431..17 2075 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:27:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21666477..21666878 17..418 2010 100 Plus
Blast to na_te.dros performed on 2015-02-13 15:27:34 has no hits.

BS15075.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:16:25 Download gff for BS15075.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7160-PA 1..414 17..430 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:49:37 Download gff for BS15075.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7160-PA 1..414 17..430 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:54:20 Download gff for BS15075.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr78E-RA 18..438 17..438 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:50:22 Download gff for BS15075.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr78E-RA 18..438 17..438 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:50:22 Download gff for BS15075.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 21666477..21666878 17..418 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:54:20 Download gff for BS15075.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21659577..21659978 17..418 100 <- Plus

BS15075.5prime Sequence

444 bp (444 high quality bases) assembled on 2006-10-23

> BS15075.5prime
GAAGTTATCATTCGACATGTTTAAGATTCTCATCGTCGCCCTGTCCCTTT
GCACGGCCGTCGTGCTGAGTGCTCCAGTGGACCACGTCACATCCACCACC
CAGCCACCGGTGGCCATTCTCGAATCATCTCACGAAAAGCACGAGGATGG
ATCGTACAACTTCTCTTACCTCGGCGAGGACGGCACCCACAGAAGGGAGG
AGGCCGTGGTCAGAAACCAAGGCACCGAGAACGAGTACCTGGAGATCAGC
GGCTCCTACTCCTACTTCGATGCCAACGGACAGGAGGTGACCGTCACCTA
CAAGGCCGATGACCACGGATTTGTACCAGAGGGCGGAGCAATCCTGCCCC
AGATTTCGCTGGCCGCCAAGCAGGTCAGCGAGCAGGTGCCCCAACCAGAT
CTTGACTATGCTAAGCCTCCTAAGGTCTAAAAGCTTTCTAGACC

BS15075.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG7160-PA 414 CG7160-RA 1..414 17..430 2070 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:36:53
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr78E-RA 463 CG7160-RA 24..438 16..430 2075 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:36:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21666477..21666878 430..29 2010 100 Minus
Blast to na_te.dros performed on 2015-02-13 12:36:53 has no hits.

BS15075.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:16:26 Download gff for BS15075.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7160-PA 1..414 17..430 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:49:38 Download gff for BS15075.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7160-PA 1..414 17..430 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:03:02 Download gff for BS15075.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr78E-RA 18..438 9..430 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:16:13 Download gff for BS15075.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr78E-RA 18..438 9..430 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:16:13 Download gff for BS15075.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21666477..21666878 29..430 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:03:02 Download gff for BS15075.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21659577..21659978 29..430 100 <- Minus

BS15075.complete Sequence

446 bp assembled on 2006-11-01

GenBank Submission: FJ637868

> BS15075.complete
GAAGTTATCAGTCGACATGTTTAAGATTCTCATCGTCGCCCTGTCCCTTT
GCACGGCCGTCGTGCTGAGTGCTCCAGTGGACCACGTCACATCCACCACC
CAGCCACCGGTGGCCATTCTCGAATCATCTCACGAAAAGCACGAGGATGG
ATCGTACAACTTCTCTTACCTCGGCGAGGACGGCACCCACAGAAGGGAGG
AGGCCGTGGTCAGAAACCAAGGCACCGAGAACGAGTACCTGGAGATCAGC
GGCTCCTACTCCTACTTCGATGCCAACGGACAGGAGGTGACCGTCACCTA
CAAGGCCGATGACCACGGATTTGTACCAGAGGGCGGAGCAATCCTGCCCC
AGATTTCGCTGGCCGCCAAGCAGGTCAGCGAGCAGGTGCCCCAACCAGAT
CTTGACTATGCTAAGCCTCCTAAGGTCTAAAAGCTTTCTAGACCAT

BS15075.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:42:57
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr78E-RA 414 CG7160-PA 1..414 17..430 2070 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:42:58
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr78E-RA 463 CG7160-RA 24..438 16..430 2075 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:42:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21666477..21666878 430..29 2010 100 Minus
Blast to na_te.dros performed on 2014-11-27 06:42:56 has no hits.

BS15075.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:48 Download gff for BS15075.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr78E-RA 1..414 17..430 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:54:16 Download gff for BS15075.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr78E-RA 18..438 9..430 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:51:42 Download gff for BS15075.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr78E-RA 31..436 23..428 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:49 Download gff for BS15075.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr78E-RA 18..438 9..430 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:52:27 Download gff for BS15075.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr78E-RA 31..436 23..428 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:52:27 Download gff for BS15075.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21666479..21666880 23..428 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:51:42 Download gff for BS15075.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21659579..21659980 23..428 99   Minus

BS15075.pep Sequence

Translation from 16 to 429

> BS15075.pep
MFKILIVALSLCTAVVLSAPVDHVTSTTQPPVAILESSHEKHEDGSYNFS
YLGEDGTHRREEAVVRNQGTENEYLEISGSYSYFDANGQEVTVTYKADDH
GFVPEGGAILPQISLAAKQVSEQVPQPDLDYAKPPKV*

BS15075.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:29:50
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr78E-PA 137 CG7160-PA 1..137 1..137 708 100 Plus
Cpr47Eb-PA 214 CG13224-PA 1..136 1..133 227 42.3 Plus
Cpr47Ec-PA 131 CG9077-PA 1..118 1..122 210 42.3 Plus
Cpr47Ef-PD 601 CG13214-PD 121..231 19..121 199 39.6 Plus
Cpr47Ef-PC 612 CG13214-PC 121..231 19..121 199 39.6 Plus