Clone Sequence Records
BS15080.3prime Sequence
828 bp (725 high quality bases) assembled on 2006-10-23
> BS15080.3prime
ATGGTCTAGAAAGCTTTCACGACCAATGAGTCCAGTTGGCGAAGCTTGCG
TAGAGCGCATCCGCCTTAAAATCGGTTACACTTGGCATCAATTTACTGCT
CGCCGTAAATCGGTAGCTTGGTGCAATCTTGCCCAGCTTTACGCCACGCT
CCAGCAAAAGACGAGTAACACTTAGTTGCTTGGCCGACGGCTGGATGGTC
TTAAACGATCCGATATAGGCGAAGCTAAGACTCTGCGAGTCATAGTTTAT
ATTGTTCATGTGGGCACCCATTTTATTCCAGCCCCGTCCCACATATACAT
TTCCATCTCCGCCAATCAGAAAGTTGTACGCAATATCACACTTCTGCGAC
GATTCTATATCGTAGGTCTGCAGCAGACGAACTCGGAGCACACAGATCGC
CTGTGTGCTGCAATTTTCTGAATTGGTGGGCAAGGCTATGACCAATCCCA
CGGGCAGCTCCAGATCGGGAATCTCCTTCTGTGGCGGCTGTGCGAGCCAT
TGCTGACGCTCCACGAATCTCAGTATTAGTCCACCACCAATGTTGTCCAG
ATCTATTGTTGAATTGATTGGAATATTTTGTCTGTAATCGTCGTCATCTC
TGATCTTACTTTGGTTCAACGTCTTTCCGAAGAGATTTGTGGTGGTGGCC
AGTACGATACCCAGCAGGAAGGTTAAAGTTACAAAAACCACTGTAACTGT
GACGGCCTTGCGTCCGACAGTGTTGGGCAGAAAAGGACAAATTGGTGGGG
TTTGCGCCGGATCTTCGTGTTTGGAGCCCGGCGCACTTCCATTCGTGCTG
GGACCACCATTGAATGCGGGGTTATCCT
BS15080.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4432-PB | 1563 | PGRP-LC-RB | 752..1563 | 828..17 | 4060 | 100 | Minus |
| CG4432-PA | 1503 | PGRP-LC-RA | 752..970 | 828..610 | 1095 | 100 | Minus |
| CG4432-PC | 1536 | PGRP-LC-RC | 752..970 | 828..610 | 1095 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:06:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PGRP-LC-RH | 1935 | CG4432-RH | 963..1775 | 828..16 | 4065 | 100 | Minus |
| PGRP-LC-RB | 2039 | CG4432-RB | 1067..1879 | 828..16 | 4065 | 100 | Minus |
| PGRP-LC-RC | 2579 | CG4432-RC | 1881..2419 | 554..16 | 2695 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:06:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9347634..9348176 | 558..16 | 2700 | 99.8 | Minus |
| 3L | 28110227 | 3L | 9344899..9345124 | 778..553 | 1130 | 100 | Minus |
| 3L | 28110227 | 3L | 9343079..9343130 | 828..777 | 260 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 07:06:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Uvir | 6564 | Dvir\Uvir VIRUVIR 6564bp | 1611..1648 | 334..298 | 115 | 81.6 | Minus |
BS15080.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:16:29 Download gff for
BS15080.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4432-PB | 752..1563 | 17..828 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:49:43 Download gff for
BS15080.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4432-PB | 752..1563 | 17..828 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:50:28 Download gff for
BS15080.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-LC-RB | 1067..1885 | 11..828 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:25:18 Download gff for
BS15080.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-LC-RB | 1067..1885 | 11..828 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:25:18 Download gff for
BS15080.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9343079..9343129 | 778..828 | 100 | -> | Minus |
| 3L | 9344900..9345124 | 553..777 | 100 | -> | Minus |
| 3L | 9347640..9348182 | 11..552 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:50:28 Download gff for
BS15080.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9336179..9336229 | 778..828 | 100 | -> | Minus |
| arm_3L | 9338000..9338224 | 553..777 | 100 | -> | Minus |
| arm_3L | 9340740..9341282 | 11..552 | 99 | | Minus |
BS15080.5prime Sequence
829 bp (766 high quality bases) assembled on 2006-10-23
> BS15080.5prime
GAAGTTATCAGTCGACATGCCTTTTAGCAATGAAACGGAAATGAGCCAAT
GTTCCAATGCGAAACGTAGAGTAAACGATCCGTTGACTGGACCAAAAAAC
TGCAGTACTTCGTCCACAGACTCGGGCGTTATACTAAACGATAATGTGGC
GGCATTCCGGCCGGAGAAGGAGACCAAAGATCGGGGGACGGGCGAAGGGC
AGTTCCAATCGAAATCGGAAGAGAAAACGGAATCCAAGCGTATCAGCGTT
GAGCACACTGTCAATATAACAACGGAAAATGTTGGAAAGACATCTTCGCC
GGCGGTTTCCATACGGAGTACCACAATTTCCGTTGTGTCCATCGATGATA
ATGCCATCGACTCGAGTAGTATTGATAGTGATTCGGAGGCCGAAGCGGAG
GATTATACGGTCCAGAAGCTGGGTCACCAGGTCACCTACCCGCCCAACAG
TTCACACCTGCGCGACCTTAACCAGGGTCTAACGGTGATCAGTCGCCATG
TGGCGCCAGGTGAGGCGGCAGTACCACCACCCAATCCCCTGGAAGCTGGC
ATTGTGGCCAAGCAAATACTGAACGGTAATCTGGCCGTGGCCACGCCCAC
ATCGCCGGCGGGCGGTGCCACGCAGGGTATTGGCAGCATCGCCCTGACCA
ACTCCACAGATGTGACGTTCGGTGATAAGCATTTCTACGAGGGACCCGTG
ACGATACAACAGTTTCTCATCGATAATCGGGACAAGTGGAAACCGGGCGA
GGGACCAGCTGGTGGACAGGATAACCCCGCATTCAATGGTGGTCCCAGCA
CGAATGGAAGTGCGCCGGGCTCCAAACAC
BS15080.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4432-PA | 1503 | PGRP-LC-RA | 1..813 | 17..829 | 4065 | 100 | Plus |
| CG4432-PC | 1536 | PGRP-LC-RC | 1..813 | 17..829 | 4065 | 100 | Plus |
| CG4432-PB | 1563 | PGRP-LC-RB | 1..813 | 17..829 | 4065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:11:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PGRP-LC-RI | 1982 | CG4432-RI | 311..1128 | 12..829 | 4090 | 100 | Plus |
| PGRP-LC-RH | 1935 | CG4432-RH | 207..1024 | 12..829 | 4090 | 100 | Plus |
| PGRP-LC-RG | 1928 | CG4432-RG | 311..1128 | 12..829 | 4090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:11:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9342323..9343130 | 12..819 | 4040 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:11:06 has no hits.
BS15080.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:16:30 Download gff for
BS15080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4432-PB | 1..813 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:49:44 Download gff for
BS15080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4432-PB | 1..813 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:53:27 Download gff for
BS15080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-LC-RD | 211..1033 | 7..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:03:32 Download gff for
BS15080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-LC-RG | 306..1128 | 7..829 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:03:32 Download gff for
BS15080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9342318..9343137 | 7..828 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:53:27 Download gff for
BS15080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9335418..9336237 | 7..828 | 99 | | Plus |
BS15080.complete Sequence
1595 bp assembled on 2006-11-01
GenBank Submission: FJ637870
> BS15080.complete
GAAGTTATCAGTCGACATGCCTTTTAGCAATGAAACGGAAATGAGCCAAT
GTTCCAATGCGAAACGTAGAGTAAACGATCCGTTGACTGGACCAAAAAAC
TGCAGTACTTCGTCCACAGACTCGGGCGTTATACTAAACGATAATGTGGC
GGCATTCCGGCCGGAGAAGGAGACCAAAGATCGGGGGACGGGCGAAGGGC
AGTTCCAATCGAAATCGGAAGAGAAAACGGAATCCAAGCGTATCAGCGTT
GAGCACACTGTCAATATAACAACGGAAAATGTTGGAAAGACATCTTCGCC
GGCGGTTTCCATACGGAGTACCACAATTTCCGTTGTGTCCATCGATGATA
ATGCCATCGACTCGAGTAGTATTGATAGTGATTCGGAGGCCGAAGCGGAG
GATTATACGGTCCAGAAGCTGGGTCACCAGGTCACCTACCCGCCCAACAG
TTCACACCTGCGCGACCTTAACCAGGGTCTAACGGTGATCAGTCGCCATG
TGGCGCCAGGTGAGGCGGCAGTACCACCACCCAATCCCCTGGAAGCTGGC
ATTGTGGCCAAGCAAATACTGAACGGTAATCTGGCCGTGGCCACGCCCAC
ATCGCCGGCGGGCGGTGCCACGCAGGGTATTGGCAGCATCGCCCTGACCA
ACTCCACAGATGTGACGTTCGGTGATAAGCATTTCTACGAGGGACCCGTG
ACGATACAACAGTTTCTCATCGATAATCGGGACAAGTGGAAACCGGGCGA
GGGACCAGCTGGTGGACAGGATAACCCCGCATTCAATGGTGGTCCCAGCA
CGAATGGAAGTGCGCCGGGCTCCAAACACGAAGATCCGGCGCAAACCCCA
CCAATTTGTCCTTTTCTGCCCAACACTGTCGGACGCAAGGCCGTCACAGT
TACAGTGGTTTTTGTAACTTTAACCTTCCTGCTGGGTATCGTACTGGCCA
CCACCACAAATCTCTTCGGAAAGACGTTGAACCAAAGTAAGATCAGAGAT
GACGACGATTACAGACAAAATATTCCAATCAATTCAACAATAGATCTGGA
CAACATTGGTGGTGGACTAATACTGAGATTCGTGGAGCGTCAGCAATGGC
TCGCACAGCCGCCACAGAAGGAGATTCCCGATCTGGAGCTGCCCGTGGGA
TTGGTCATAGCCTTGCCCACCAATTCAGAAAATTGCAGCACACAGGCGAT
CTGTGTGCTCCGAGTTCGTCTGCTGCAGACCTACGATATAGAATCGTCGC
AGAAGTGTGATATTGCGTACAACTTTCTGATTGGCGGAGATGGAAATGTA
TATGTGGGACGGGGCTGGAATAAAATGGGTGCCCACATGAACAATATAAA
CTATGACTCGCAGAGTCTTAGCTTCGCCTATATCGGATCGTTTAAGACCA
TCCAGCCGTCGGCCAAGCAACTAAGTGTTACTCGTCTTTTGCTGGAGCGT
GGCGTAAAGCTGGGCAAGATTGCACCAAGCTACCGATTTACGGCGAGCAG
TAAATTGATGCCAAGTGTAACCGATTTTAAGGCGGATGCGCTCTACGCAA
GCTTCGCCAACTGGACTCATTGGTCGTGAAAGCTTTCTAGACCAT
BS15080.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:49:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PGRP-LC-RH | 1563 | CG4432-PH | 1..1563 | 17..1579 | 7815 | 100 | Plus |
| PGRP-LC-RB | 1563 | CG4432-PB | 1..1563 | 17..1579 | 7815 | 100 | Plus |
| PGRP-LC-RG | 1038 | CG4432-PG | 1..971 | 17..987 | 4855 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:50:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PGRP-LC-RH | 1935 | CG4432-RH | 207..1775 | 12..1580 | 7845 | 100 | Plus |
| PGRP-LC-RB | 2039 | CG4432-RB | 311..1879 | 12..1580 | 7845 | 100 | Plus |
| PGRP-LC-RG | 1928 | CG4432-RG | 311..1286 | 12..987 | 4880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:49:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9342323..9343130 | 12..819 | 4040 | 100 | Plus |
| 3L | 28110227 | 3L | 9347634..9348176 | 1038..1580 | 2700 | 99.8 | Plus |
| 3L | 28110227 | 3L | 9344899..9345124 | 818..1043 | 1130 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 15:49:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Uvir | 6564 | Dvir\Uvir VIRUVIR 6564bp | 1611..1648 | 1262..1298 | 115 | 81.6 | Plus |
BS15080.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:30 Download gff for
BS15080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-LC-RB | 1..1563 | 17..1579 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:06:10 Download gff for
BS15080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-LC-RB | 290..1869 | 7..1585 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:05:02 Download gff for
BS15080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-LC-RB | 316..1877 | 17..1578 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:30 Download gff for
BS15080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-LC-RB | 290..1869 | 7..1585 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:50:05 Download gff for
BS15080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-LC-RB | 316..1877 | 17..1578 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:50:05 Download gff for
BS15080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9342328..9343129 | 17..818 | 100 | -> | Plus |
| 3L | 9344900..9345124 | 819..1043 | 100 | -> | Plus |
| 3L | 9347640..9348174 | 1044..1578 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:05:02 Download gff for
BS15080.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9335428..9336229 | 17..818 | 100 | -> | Plus |
| arm_3L | 9338000..9338224 | 819..1043 | 100 | -> | Plus |
| arm_3L | 9340740..9341274 | 1044..1578 | 100 | | Plus |
BS15080.pep Sequence
Translation from 16 to 1578
> BS15080.pep
MPFSNETEMSQCSNAKRRVNDPLTGPKNCSTSSTDSGVILNDNVAAFRPE
KETKDRGTGEGQFQSKSEEKTESKRISVEHTVNITTENVGKTSSPAVSIR
STTISVVSIDDNAIDSSSIDSDSEAEAEDYTVQKLGHQVTYPPNSSHLRD
LNQGLTVISRHVAPGEAAVPPPNPLEAGIVAKQILNGNLAVATPTSPAGG
ATQGIGSIALTNSTDVTFGDKHFYEGPVTIQQFLIDNRDKWKPGEGPAGG
QDNPAFNGGPSTNGSAPGSKHEDPAQTPPICPFLPNTVGRKAVTVTVVFV
TLTFLLGIVLATTTNLFGKTLNQSKIRDDDDYRQNIPINSTIDLDNIGGG
LILRFVERQQWLAQPPQKEIPDLELPVGLVIALPTNSENCSTQAICVLRV
RLLQTYDIESSQKCDIAYNFLIGGDGNVYVGRGWNKMGAHMNNINYDSQS
LSFAYIGSFKTIQPSAKQLSVTRLLLERGVKLGKIAPSYRFTASSKLMPS
VTDFKADALYASFANWTHWS*
BS15080.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PGRP-LC-PH | 520 | CG4432-PH | 1..520 | 1..520 | 2700 | 100 | Plus |
| PGRP-LC-PB | 520 | CG4432-PB | 1..520 | 1..520 | 2700 | 100 | Plus |
| PGRP-LC-PI | 501 | CG4432-PI | 1..501 | 1..520 | 2566 | 96.2 | Plus |
| PGRP-LC-PD | 500 | CG4432-PD | 1..497 | 1..520 | 1952 | 74.4 | Plus |
| PGRP-LC-PA | 500 | CG4432-PA | 1..497 | 1..520 | 1952 | 74.4 | Plus |
