Clone Sequence Records
BS15081.3prime Sequence
453 bp (453 high quality bases) assembled on 2006-10-23
> BS15081.3prime
ATGGTCTAGAAAGCTTTTACAAGCACTCATCGATGGACGGCAACCATCCG
CTGCAGTAATGCCAGACGGCCCAGGCGGACCATCCCTGCTGGCTGAGGAC
CTTCTGGGCGCAACGGACAGAGTTGGTGATGTCGTCGGTCAAGAGGGCAT
TGCAGCTCAAGCCGCACTCGTTGTAGGAGAAGCGTCCGTCGGCCTGGCAC
CAGTACAGATCGTTGATCTGGAAGATTCCGTAGTCGTTGGAGCCATCGGA
GTTGGCAGGTCCCACCACCCAGGTGCGGTAGTCACTCTCGTGCTGGGCAA
TGCAGGTCCACTTGTCCAGCTGGTCGCGGGGAACTCCCAAGTCGGCCATC
TCGCGGGCCAGCGAGCAGCGGTCGAGGGTGCGACCTGCCAGGGCAGGAGC
GGCAATGGCCAGGAGCACCAGAGCAAAGAAAGCCTTCATGTCGACTGATA
ACT
BS15081.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1165-PA | 423 | LysS-RA | 1..419 | 439..21 | 2095 | 100 | Minus |
CG1179-PA | 423 | LysB-RA | 256..419 | 184..21 | 570 | 93.9 | Minus |
CG1180-PA | 423 | LysE-RA | 256..412 | 184..28 | 535 | 93.6 | Minus |
CG9118-PA | 423 | LysD-RA | 256..419 | 184..21 | 495 | 92 | Minus |
CG9111-PA | 390 | LysC-RA | 275..390 | 21..136 | 380 | 93.1 | Plus |
CG9116-PA | 426 | LysP-RA | 249..320 | 194..123 | 310 | 97.2 | Minus |
CG9111-PA | 390 | LysC-RA | 52..150 | 385..287 | 195 | 87.8 | Minus |
CG9116-PA | 426 | LysP-RA | 106..156 | 334..284 | 180 | 94.1 | Minus |
CG9111-PA | 390 | LysC-RA | 193..227 | 244..210 | 175 | 100 | Minus |
CG1179-PA | 423 | LysB-RA | 193..227 | 244..210 | 175 | 100 | Minus |
CG9118-PA | 423 | LysD-RA | 193..227 | 244..210 | 175 | 100 | Minus |
CG1180-PA | 423 | LysE-RA | 193..225 | 244..212 | 165 | 100 | Minus |
CG9120-PA | 429 | LysX-RA | 159..246 | 281..194 | 165 | 87.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:52:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
LysS-RA | 492 | CG1165-RA | 24..449 | 441..16 | 2115 | 99.8 | Minus |
LysB-RB | 611 | CG1179-RB | 22..447 | 441..16 | 1030 | 83.8 | Minus |
LysB-RA | 486 | CG1179-RA | 22..447 | 441..16 | 1030 | 83.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:52:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1227770..1228195 | 441..16 | 2115 | 99.8 | Minus |
3L | 28110227 | 3L | 1207392..1207817 | 441..16 | 980 | 83 | Minus |
3L | 28110227 | 3L | 1212952..1213375 | 439..16 | 955 | 82.7 | Minus |
3L | 28110227 | 3L | 1210754..1211126 | 16..385 | 900 | 83.4 | Plus |
3L | 28110227 | 3L | 1218286..1218595 | 46..352 | 735 | 83.2 | Plus |
3L | 28110227 | 3L | 1194874..1195241 | 21..385 | 560 | 77.4 | Plus |
3L | 28110227 | 3L | 1210536..1210724 | 385..197 | 495 | 84.1 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:52:28 has no hits.
BS15081.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:16:31 Download gff for
BS15081.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LysS-PA | 1..423 | 17..439 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:49:45 Download gff for
BS15081.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1165-PA | 1..423 | 17..439 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 06:29:39 Download gff for
BS15081.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LysS-RA | 21..455 | 8..444 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:03:11 Download gff for
BS15081.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LysS-RA | 21..455 | 8..444 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:03:11 Download gff for
BS15081.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1227767..1228201 | 8..444 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 06:29:39 Download gff for
BS15081.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1227767..1228201 | 8..444 | 98 | | Minus |
BS15081.5prime Sequence
453 bp (453 high quality bases) assembled on 2006-10-23
> BS15081.5prime
GAAGTTATCAGTCGACATGAAGGCTTTCTTTGCTCTGGTGCTCCTGGCCA
TTGCCGCTCCTGCCCTGGCAGGTCGCACCCTCGACCGCTGCTCGCTGGCC
CGCGAGATGGCCGACTTGGGAGTTCCCCGCGACCAGCTGGACAAGTGGAC
CTGCATTGCCCAGCACGAGAGTGACTACCGCACCTGGGTGGTGGGACCTG
CCAACTCCGATGGCTCCAACGACTACGGAATCTTCCAGATCAACGATCTG
TACTGGTGCCAGGCCGACGGACGCTTCTCCTACAACGAGTGCGGCTTGAG
CTGCAATGCCCTCTTGACCGACGACATCACCAACTCTGTCCGTTGCGCCC
AGAAGGTCCTCAGCCAGCAGGGATGGTCCGCCTGGGCCGTCTGGCATTAC
TGCAGCGGATGGTTGCCGTCCATCGATGAGTGCTTCTAAAAGCTTTCTAG
ACC
BS15081.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1165-PA | 423 | LysS-RA | 1..423 | 17..439 | 2115 | 100 | Plus |
CG1179-PA | 423 | LysB-RA | 256..423 | 272..439 | 590 | 94 | Plus |
CG1180-PA | 423 | LysE-RA | 256..423 | 272..439 | 540 | 92.8 | Plus |
CG9118-PA | 423 | LysD-RA | 256..423 | 272..439 | 515 | 92.2 | Plus |
CG9111-PA | 390 | LysC-RA | 270..390 | 440..320 | 405 | 93.3 | Minus |
CG9116-PA | 426 | LysP-RA | 249..320 | 262..333 | 310 | 97.2 | Plus |
CG9111-PA | 390 | LysC-RA | 52..150 | 71..169 | 195 | 87.8 | Plus |
CG9116-PA | 426 | LysP-RA | 106..156 | 122..172 | 180 | 94.1 | Plus |
CG9111-PA | 390 | LysC-RA | 193..227 | 212..246 | 175 | 100 | Plus |
CG1179-PA | 423 | LysB-RA | 193..227 | 212..246 | 175 | 100 | Plus |
CG9118-PA | 423 | LysD-RA | 193..227 | 212..246 | 175 | 100 | Plus |
CG1180-PA | 423 | LysE-RA | 193..225 | 212..244 | 165 | 100 | Plus |
CG9120-PA | 429 | LysX-RA | 159..246 | 175..262 | 165 | 87.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:23:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
LysS-RA | 492 | CG1165-RA | 24..449 | 15..440 | 2130 | 100 | Plus |
LysB-RB | 611 | CG1179-RB | 22..447 | 15..440 | 1045 | 84 | Plus |
LysB-RA | 486 | CG1179-RA | 22..447 | 15..440 | 1045 | 84 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:23:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1227770..1228195 | 15..440 | 2130 | 100 | Plus |
3L | 28110227 | 3L | 1207392..1207817 | 15..440 | 995 | 83.2 | Plus |
3L | 28110227 | 3L | 1212952..1213375 | 17..440 | 970 | 82.9 | Plus |
3L | 28110227 | 3L | 1210754..1211126 | 440..71 | 915 | 83.6 | Minus |
3L | 28110227 | 3L | 1218286..1218595 | 410..104 | 735 | 83.2 | Minus |
3L | 28110227 | 3L | 1194874..1195241 | 435..71 | 560 | 77.4 | Minus |
3L | 28110227 | 3L | 1210536..1210724 | 71..259 | 495 | 84.1 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:23:05 has no hits.
BS15081.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:16:32 Download gff for
BS15081.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LysS-PA | 1..423 | 17..439 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:49:47 Download gff for
BS15081.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1165-PA | 1..423 | 17..439 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:39:24 Download gff for
BS15081.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LysS-RA | 21..455 | 12..448 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:31:27 Download gff for
BS15081.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LysS-RA | 21..455 | 12..448 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:31:27 Download gff for
BS15081.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1227767..1228201 | 12..448 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:39:24 Download gff for
BS15081.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1227767..1228201 | 12..448 | 98 | | Plus |
BS15081.complete Sequence
455 bp assembled on 2006-11-01
GenBank Submission: FJ637871
> BS15081.complete
GAAGTTATCAGTCGACATGAAGGCTTTCTTTGCTCTGGTGCTCCTGGCCA
TTGCCGCTCCTGCCCTGGCAGGTCGCACCCTCGACCGCTGCTCGCTGGCC
CGCGAGATGGCCGACTTGGGAGTTCCCCGCGACCAGCTGGACAAGTGGAC
CTGCATTGCCCAGCACGAGAGTGACTACCGCACCTGGGTGGTGGGACCTG
CCAACTCCGATGGCTCCAACGACTACGGAATCTTCCAGATCAACGATCTG
TACTGGTGCCAGGCCGACGGACGCTTCTCCTACAACGAGTGCGGCTTGAG
CTGCAATGCCCTCTTGACCGACGACATCACCAACTCTGTCCGTTGCGCCC
AGAAGGTCCTCAGCCAGCAGGGATGGTCCGCCTGGGCCGTCTGGCATTAC
TGCAGCGGATGGTTGCCGTCCATCGATGAGTGCTTCTAAAAGCTTTCTAG
ACCAT
BS15081.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:50:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
LysS-RA | 423 | CG1165-PA | 1..423 | 17..439 | 2115 | 100 | Plus |
LysB-RB | 423 | CG1179-PB | 1..423 | 17..439 | 980 | 83.1 | Plus |
LysB-RA | 423 | CG1179-PA | 1..423 | 17..439 | 980 | 83.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:50:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
LysS-RA | 492 | CG1165-RA | 24..449 | 15..440 | 2130 | 100 | Plus |
LysB-RB | 611 | CG1179-RB | 22..447 | 15..440 | 995 | 83.2 | Plus |
LysB-RA | 486 | CG1179-RA | 22..447 | 15..440 | 995 | 83.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:50:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1227770..1228195 | 15..440 | 2130 | 100 | Plus |
3L | 28110227 | 3L | 1207392..1207817 | 15..440 | 995 | 83.2 | Plus |
3L | 28110227 | 3L | 1212952..1213375 | 17..440 | 970 | 82.9 | Plus |
3L | 28110227 | 3L | 1210754..1211126 | 440..71 | 915 | 83.6 | Minus |
3L | 28110227 | 3L | 1218286..1218595 | 410..104 | 735 | 83.2 | Minus |
3L | 28110227 | 3L | 1194874..1195241 | 435..71 | 560 | 77.4 | Minus |
3L | 28110227 | 3L | 1210536..1210724 | 71..259 | 495 | 84.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:50:41 has no hits.
BS15081.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:32 Download gff for
BS15081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LysS-RA | 1..423 | 17..439 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:06:12 Download gff for
BS15081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LysS-RA | 1..434 | 13..448 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:36 Download gff for
BS15081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LysS-RA | 26..446 | 17..437 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:32 Download gff for
BS15081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LysS-RA | 1..434 | 13..448 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:23 Download gff for
BS15081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LysS-RA | 26..446 | 17..437 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:23 Download gff for
BS15081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1227772..1228192 | 17..437 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:36 Download gff for
BS15081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1227772..1228192 | 17..437 | 100 | | Plus |
BS15081.pep Sequence
Translation from 16 to 438
> BS15081.pep
MKAFFALVLLAIAAPALAGRTLDRCSLAREMADLGVPRDQLDKWTCIAQH
ESDYRTWVVGPANSDGSNDYGIFQINDLYWCQADGRFSYNECGLSCNALL
TDDITNSVRCAQKVLSQQGWSAWAVWHYCSGWLPSIDECF*
BS15081.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
LysS-PA | 140 | CG1165-PA | 1..140 | 1..140 | 776 | 100 | Plus |
LysB-PB | 140 | CG1179-PB | 1..140 | 1..140 | 630 | 81.6 | Plus |
LysB-PA | 140 | CG1179-PA | 1..140 | 1..140 | 630 | 81.6 | Plus |
LysC-PA | 140 | CG9111-PA | 1..140 | 1..140 | 629 | 81.6 | Plus |
LysD-PA | 140 | CG9118-PA | 1..140 | 1..140 | 623 | 80.9 | Plus |