Clone BS15084 Report

Search the DGRC for BS15084

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:150
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptTrf4-2-RA
Protein status:BS15084.pep: full length peptide match
Sequenced Size:1256

Clone Sequence Records

BS15084.complete Sequence

1256 bp assembled on 2009-12-07

GenBank Submission: KX803715

> BS15084.complete
GAAGTTATCAGTCGACATGTGTGACGAAGCGAATCCAGCGAAGCCGTGGC
AGCTTCCCGATGTGGTGTACGGCAATGGGATTCCGGCGCTGTGCCTGCTG
CACCAGGAGATCGAGCAGTTCTACAACTACATCCGGTCCACGCCAACAGA
GTTCTGCTTGCGGGCAGGTGCAGTGCGTCGCATCGAGGATGTGGTGCTTT
CCATTTGGCCAAGCGCATCCGTCGATCTCTTTGGCTCATTTCGGACCGGG
CTAAATCTGCCGGACTCGGACATTGATCTGGTTGTGTACTATAAGTTCTG
GAACCCCAGGCTGCTGCATGAGCTTCAAAACGAACTAGTCAGCCAAGGAG
TAACTGATCCGGACACTGTGACCGTCCTCGACAAGGCCTCTGTGCCAGTG
GTCAAGTTTACGGACCTCATTTCCCGCATCAGGTTCGATGTGACCTTCAA
CTCCGTAGCATCCGGCGTTCAGGCCGCCGACCTGATCAAGGACTTTATCC
GCCATTTTCCCGAACTACCCAAACTGGTCATGGTGCTCAAGCAGTTCCTC
AGCCTTCACGGATTCAACGAGGTCTACAACTCCGGCGGAGTCTCGTCCTA
CGCACTCACGCTAATGGTGATCAGCTTTCTGCAGCAGCATGCGCGCTCCA
ACAGGCGTTTAAGTGAACACAGTAAGCTGGCCCTGCTGCTCATTCAGTTT
CTAGACTACTACGGCCGCAAGTTTGACTTCTTCAAGTATGGAATTTCTGT
CCTCGGCCAAGGCGGTTGCGTGGAGAAGGCTCGACTTCGCTCCACGCTCG
GCGAGAACAACTGGCAGTCGGTGCTTTGCATAGAGGATCCAGTGACGCCG
ACCAACGACATAGGGAGGAGCTCCTATGGGGTGCTCGGCGTGATGCAGGG
ATTCGGGGCAGCCTTCGTGAAGCTCTCGAAGCTGGTGGACTCCGACTCGT
CCAAGATCGTCGGCCCCATACTGGCCAACATTGTAGAGGTGCCGCAGTCC
ATCATCAACTACCGGGCTTGGGTGCACTACAACTTCCAGCACCTTTTGAC
ACCGGAATTGCCTTGTGCCGATTCCCTTGTACAACCGTCGCCTACGGGAT
CCACATCCCCCTCCGCCTCCGCCTCCGCCTCCGAGGATGAGCGCTCGGGC
GGGCCGGCTACTATTGGATTCGGCCGATGTGATGATCCTCCCCAAAACAT
AGACATAGTTGCCGACCTTGCAAACCTTAAGATGAATTAAAAGCTTTCTA
GACCAT

BS15084.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:00:37
Subject Length Description Subject Range Query Range Score Percent Strand
Trf4-2-RB 1224 CG17462-PB 1..1224 17..1240 6120 100 Plus
Trf4-2-RA 1224 CG17462-PA 1..1224 17..1240 6120 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:00:39
Subject Length Description Subject Range Query Range Score Percent Strand
Trf4-2-RB 1429 CG17462-RB 146..1369 17..1240 6120 100 Plus
Trf4-2-RA 1870 CG17462-RA 356..1579 17..1240 6120 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:00:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24925571..24926794 17..1240 6120 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:00:37 has no hits.

BS15084.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:44:21 Download gff for BS15084.complete
Subject Subject Range Query Range Percent Splice Strand
CG17462-RA 267..1488 17..1238 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:03:31 Download gff for BS15084.complete
Subject Subject Range Query Range Percent Splice Strand
Trf4-2-RA 356..1577 17..1238 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:57:54 Download gff for BS15084.complete
Subject Subject Range Query Range Percent Splice Strand
CG17462-RA 267..1488 17..1238 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:01:52 Download gff for BS15084.complete
Subject Subject Range Query Range Percent Splice Strand
Trf4-2-RA 356..1577 17..1238 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:01:52 Download gff for BS15084.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24925571..24926792 17..1238 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:03:31 Download gff for BS15084.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20751293..20752514 17..1238 100   Plus

BS15084.3prime Sequence

566 bp (506 high quality bases) assembled on 2006-10-23

> BS15084.3prime
ATGGTCTAGAAAGCTTTTACTTCATCTTAAGGTTTGCAAGGTCGGCAACT
ATGTCTATGTTTTGGGGAGGATCATCACATCGGCCGAATCCAATAGTAGC
CGGCCCGCCCGAGCGCTCATCCTCGGAGGCGGAGGCGGAGGCGGAGGGGG
ATGTGGATCCCGTAGGCGACGGTTGTACAAGGGAATCGGCACAAGGCAAT
TCCGGTGTCAAAAGGTGCTGGAAGTTGTAGTGCACCCAAGCCCGGTAGTT
GATGATGGACTGCGGCACCTCTACAATGTTGGCCAGTATGGGGCCGACGA
TCTTGGACGAGTCGGAGTCCACCAGCTTCAAGAGCTTCACGAAGGCTGCC
CCGAATCCCTGCATCACGCCGAGCACCCCATAGGAGCTCCTCCCTATGTC
GTTGGTCGGCGTCACTGGATCCTCTATGCAAAGCACCGACTGCCAGTTGT
TCTCGCCGAGCGTGGAGCGAAGTCGAGCCTTCTCCACGCAACCGCCTTGG
CCGAGGACACATATTCCATACTTGAAGAAGTCAAACTTGCGGCCGTAGTA
GTCTAGAAACTGAATG

BS15084.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG17462-PA 1224 CG17462-RA 675..1220 566..21 2655 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:10:56
Subject Length Description Subject Range Query Range Score Percent Strand
Trf4-2-RB 1429 CG17462-RB 820..1369 566..17 2690 99.3 Minus
Trf4-2-RA 1870 CG17462-RA 1030..1579 566..17 2690 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:10:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24926245..24926794 566..17 2690 99.3 Minus
Blast to na_te.dros performed on 2015-02-13 00:10:53 has no hits.

BS15084.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:16:38 Download gff for BS15084.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17462-PA 675..1224 17..566 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:49:54 Download gff for BS15084.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17462-PA 675..1224 17..566 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:22:41 Download gff for BS15084.3prime
Subject Subject Range Query Range Percent Splice Strand
Trf4-2-RA 1030..1579 17..566 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:46:34 Download gff for BS15084.3prime
Subject Subject Range Query Range Percent Splice Strand
Trf4-2-RA 1030..1579 17..566 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:46:34 Download gff for BS15084.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24926245..24926794 17..566 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:22:41 Download gff for BS15084.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20751967..20752516 17..566 99   Minus

BS15084.5prime Sequence

751 bp (662 high quality bases) assembled on 2006-10-23

> BS15084.5prime
GAAGTTATCAGTCGACATGTGTGACGAAGCGAATCCAGCGAAGCCGTGGC
AGCTTCCCGATGTGGTGTACGGCAATGGGATTCCGGCGCTGTGCCTGCTG
CACCAGGAGATCGAGCAGTTCTACAACTACATCCGGTCCACGCCAACAGA
GTTCTGCTTGCGGGCAGGTGCAGTGCGTCGCATCGAGGATGTGGTGCTTT
CCATTTGGCCAAGCGCATCCGTCGATCTCTTTGGCTCATTTCGGACCGGG
CTAAATCTGCCGGACTCGGACATTGATCTGGTTGTGTACTATAAGTTCTG
GAACCCCAGGCTGCTGCATGAGCTTCAAAACGAACTAGTCAGCCAAGGAG
TAACTGATCCGGACACTGTGACCGTCCTCGACAAGGCCTCTGTGCCAGTG
GTCAAGTTTACGGACCTCATTTCCCGCATCAGGTTCGATGTGACCTTCAA
CTCCGTAGCATCCGGCGTTCAGGCCGCCGACCTGATCAAGGACTTTATCC
GCCATTTTCCCGAACTACCCAAACTGGTCATGGTGCTCAAGCAGTTCCTC
AGCCTTCACGGATTCAACGAGGTCTACAACTCCGGCGGAGTCTCGTCCTA
CGCACTCACGCTAATGGTGATCAGCTTTCTGCAGCAGCATGCGCGCTCCA
ACAGGCGTTTAAGTGAACAACAGTAAGCTGGCCCTGCTGCTCATTCAGTT
TCCTAGACTACTACGGCCGCAAGTTTGACTTCTTCAAGTATGGAATTTCT
G

BS15084.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG17462-PA 1224 CG17462-RA 1..653 17..669 3265 100 Plus
CG17462-PA 1224 CG17462-RA 685..733 703..751 245 100 Plus
CG17462-PA 1224 CG17462-RA 653..685 670..702 165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:27:02
Subject Length Description Subject Range Query Range Score Percent Strand
Trf4-2-RB 1429 CG17462-RB 146..878 17..751 3625 99.7 Plus
Trf4-2-RA 1870 CG17462-RA 356..1088 17..751 3625 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:26:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24925571..24926303 17..751 3575 99.7 Plus
Blast to na_te.dros performed on 2015-02-10 16:26:58 has no hits.

BS15084.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:16:39 Download gff for BS15084.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17462-PA 1..733 17..751 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:49:55 Download gff for BS15084.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17462-PA 1..733 17..751 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:28:47 Download gff for BS15084.5prime
Subject Subject Range Query Range Percent Splice Strand
Trf4-2-RA 356..1088 17..751 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:43:27 Download gff for BS15084.5prime
Subject Subject Range Query Range Percent Splice Strand
Trf4-2-RA 356..1088 17..751 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:43:27 Download gff for BS15084.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24925571..24926303 17..751 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:28:47 Download gff for BS15084.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20751293..20752025 17..751 99   Plus

BS15084.pep Sequence

Translation from 16 to 1239

> BS15084.pep
MCDEANPAKPWQLPDVVYGNGIPALCLLHQEIEQFYNYIRSTPTEFCLRA
GAVRRIEDVVLSIWPSASVDLFGSFRTGLNLPDSDIDLVVYYKFWNPRLL
HELQNELVSQGVTDPDTVTVLDKASVPVVKFTDLISRIRFDVTFNSVASG
VQAADLIKDFIRHFPELPKLVMVLKQFLSLHGFNEVYNSGGVSSYALTLM
VISFLQQHARSNRRLSEHSKLALLLIQFLDYYGRKFDFFKYGISVLGQGG
CVEKARLRSTLGENNWQSVLCIEDPVTPTNDIGRSSYGVLGVMQGFGAAF
VKLSKLVDSDSSKIVGPILANIVEVPQSIINYRAWVHYNFQHLLTPELPC
ADSLVQPSPTGSTSPSASASASEDERSGGPATIGFGRCDDPPQNIDIVAD
LANLKMN*

BS15084.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:54:26
Subject Length Description Subject Range Query Range Score Percent Strand
Trf4-2-PB 407 CG17462-PB 1..407 1..407 2116 100 Plus
Trf4-2-PA 407 CG17462-PA 1..407 1..407 2116 100 Plus
Trf4-1-PG 802 CG11265-PG 56..409 9..372 772 45.9 Plus
Trf4-1-PF 802 CG11265-PF 56..409 9..372 772 45.9 Plus
Trf4-1-PJ 1001 CG11265-PJ 255..608 9..372 772 45.9 Plus