Clone Sequence Records
BS15084.complete Sequence
1256 bp assembled on 2009-12-07
GenBank Submission: KX803715
> BS15084.complete
GAAGTTATCAGTCGACATGTGTGACGAAGCGAATCCAGCGAAGCCGTGGC
AGCTTCCCGATGTGGTGTACGGCAATGGGATTCCGGCGCTGTGCCTGCTG
CACCAGGAGATCGAGCAGTTCTACAACTACATCCGGTCCACGCCAACAGA
GTTCTGCTTGCGGGCAGGTGCAGTGCGTCGCATCGAGGATGTGGTGCTTT
CCATTTGGCCAAGCGCATCCGTCGATCTCTTTGGCTCATTTCGGACCGGG
CTAAATCTGCCGGACTCGGACATTGATCTGGTTGTGTACTATAAGTTCTG
GAACCCCAGGCTGCTGCATGAGCTTCAAAACGAACTAGTCAGCCAAGGAG
TAACTGATCCGGACACTGTGACCGTCCTCGACAAGGCCTCTGTGCCAGTG
GTCAAGTTTACGGACCTCATTTCCCGCATCAGGTTCGATGTGACCTTCAA
CTCCGTAGCATCCGGCGTTCAGGCCGCCGACCTGATCAAGGACTTTATCC
GCCATTTTCCCGAACTACCCAAACTGGTCATGGTGCTCAAGCAGTTCCTC
AGCCTTCACGGATTCAACGAGGTCTACAACTCCGGCGGAGTCTCGTCCTA
CGCACTCACGCTAATGGTGATCAGCTTTCTGCAGCAGCATGCGCGCTCCA
ACAGGCGTTTAAGTGAACACAGTAAGCTGGCCCTGCTGCTCATTCAGTTT
CTAGACTACTACGGCCGCAAGTTTGACTTCTTCAAGTATGGAATTTCTGT
CCTCGGCCAAGGCGGTTGCGTGGAGAAGGCTCGACTTCGCTCCACGCTCG
GCGAGAACAACTGGCAGTCGGTGCTTTGCATAGAGGATCCAGTGACGCCG
ACCAACGACATAGGGAGGAGCTCCTATGGGGTGCTCGGCGTGATGCAGGG
ATTCGGGGCAGCCTTCGTGAAGCTCTCGAAGCTGGTGGACTCCGACTCGT
CCAAGATCGTCGGCCCCATACTGGCCAACATTGTAGAGGTGCCGCAGTCC
ATCATCAACTACCGGGCTTGGGTGCACTACAACTTCCAGCACCTTTTGAC
ACCGGAATTGCCTTGTGCCGATTCCCTTGTACAACCGTCGCCTACGGGAT
CCACATCCCCCTCCGCCTCCGCCTCCGCCTCCGAGGATGAGCGCTCGGGC
GGGCCGGCTACTATTGGATTCGGCCGATGTGATGATCCTCCCCAAAACAT
AGACATAGTTGCCGACCTTGCAAACCTTAAGATGAATTAAAAGCTTTCTA
GACCAT
BS15084.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:00:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trf4-2-RB | 1224 | CG17462-PB | 1..1224 | 17..1240 | 6120 | 100 | Plus |
Trf4-2-RA | 1224 | CG17462-PA | 1..1224 | 17..1240 | 6120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:00:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trf4-2-RB | 1429 | CG17462-RB | 146..1369 | 17..1240 | 6120 | 100 | Plus |
Trf4-2-RA | 1870 | CG17462-RA | 356..1579 | 17..1240 | 6120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:00:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24925571..24926794 | 17..1240 | 6120 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:00:37 has no hits.
BS15084.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:44:21 Download gff for
BS15084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17462-RA | 267..1488 | 17..1238 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:03:31 Download gff for
BS15084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trf4-2-RA | 356..1577 | 17..1238 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:57:54 Download gff for
BS15084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17462-RA | 267..1488 | 17..1238 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:01:52 Download gff for
BS15084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trf4-2-RA | 356..1577 | 17..1238 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:01:52 Download gff for
BS15084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24925571..24926792 | 17..1238 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:03:31 Download gff for
BS15084.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20751293..20752514 | 17..1238 | 100 | | Plus |
BS15084.3prime Sequence
566 bp (506 high quality bases) assembled on 2006-10-23
> BS15084.3prime
ATGGTCTAGAAAGCTTTTACTTCATCTTAAGGTTTGCAAGGTCGGCAACT
ATGTCTATGTTTTGGGGAGGATCATCACATCGGCCGAATCCAATAGTAGC
CGGCCCGCCCGAGCGCTCATCCTCGGAGGCGGAGGCGGAGGCGGAGGGGG
ATGTGGATCCCGTAGGCGACGGTTGTACAAGGGAATCGGCACAAGGCAAT
TCCGGTGTCAAAAGGTGCTGGAAGTTGTAGTGCACCCAAGCCCGGTAGTT
GATGATGGACTGCGGCACCTCTACAATGTTGGCCAGTATGGGGCCGACGA
TCTTGGACGAGTCGGAGTCCACCAGCTTCAAGAGCTTCACGAAGGCTGCC
CCGAATCCCTGCATCACGCCGAGCACCCCATAGGAGCTCCTCCCTATGTC
GTTGGTCGGCGTCACTGGATCCTCTATGCAAAGCACCGACTGCCAGTTGT
TCTCGCCGAGCGTGGAGCGAAGTCGAGCCTTCTCCACGCAACCGCCTTGG
CCGAGGACACATATTCCATACTTGAAGAAGTCAAACTTGCGGCCGTAGTA
GTCTAGAAACTGAATG
BS15084.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17462-PA | 1224 | CG17462-RA | 675..1220 | 566..21 | 2655 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:10:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trf4-2-RB | 1429 | CG17462-RB | 820..1369 | 566..17 | 2690 | 99.3 | Minus |
Trf4-2-RA | 1870 | CG17462-RA | 1030..1579 | 566..17 | 2690 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:10:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24926245..24926794 | 566..17 | 2690 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:10:53 has no hits.
BS15084.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:16:38 Download gff for
BS15084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17462-PA | 675..1224 | 17..566 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:49:54 Download gff for
BS15084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17462-PA | 675..1224 | 17..566 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:22:41 Download gff for
BS15084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trf4-2-RA | 1030..1579 | 17..566 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:46:34 Download gff for
BS15084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trf4-2-RA | 1030..1579 | 17..566 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:46:34 Download gff for
BS15084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24926245..24926794 | 17..566 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:22:41 Download gff for
BS15084.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20751967..20752516 | 17..566 | 99 | | Minus |
BS15084.5prime Sequence
751 bp (662 high quality bases) assembled on 2006-10-23
> BS15084.5prime
GAAGTTATCAGTCGACATGTGTGACGAAGCGAATCCAGCGAAGCCGTGGC
AGCTTCCCGATGTGGTGTACGGCAATGGGATTCCGGCGCTGTGCCTGCTG
CACCAGGAGATCGAGCAGTTCTACAACTACATCCGGTCCACGCCAACAGA
GTTCTGCTTGCGGGCAGGTGCAGTGCGTCGCATCGAGGATGTGGTGCTTT
CCATTTGGCCAAGCGCATCCGTCGATCTCTTTGGCTCATTTCGGACCGGG
CTAAATCTGCCGGACTCGGACATTGATCTGGTTGTGTACTATAAGTTCTG
GAACCCCAGGCTGCTGCATGAGCTTCAAAACGAACTAGTCAGCCAAGGAG
TAACTGATCCGGACACTGTGACCGTCCTCGACAAGGCCTCTGTGCCAGTG
GTCAAGTTTACGGACCTCATTTCCCGCATCAGGTTCGATGTGACCTTCAA
CTCCGTAGCATCCGGCGTTCAGGCCGCCGACCTGATCAAGGACTTTATCC
GCCATTTTCCCGAACTACCCAAACTGGTCATGGTGCTCAAGCAGTTCCTC
AGCCTTCACGGATTCAACGAGGTCTACAACTCCGGCGGAGTCTCGTCCTA
CGCACTCACGCTAATGGTGATCAGCTTTCTGCAGCAGCATGCGCGCTCCA
ACAGGCGTTTAAGTGAACAACAGTAAGCTGGCCCTGCTGCTCATTCAGTT
TCCTAGACTACTACGGCCGCAAGTTTGACTTCTTCAAGTATGGAATTTCT
G
BS15084.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17462-PA | 1224 | CG17462-RA | 1..653 | 17..669 | 3265 | 100 | Plus |
CG17462-PA | 1224 | CG17462-RA | 685..733 | 703..751 | 245 | 100 | Plus |
CG17462-PA | 1224 | CG17462-RA | 653..685 | 670..702 | 165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:27:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trf4-2-RB | 1429 | CG17462-RB | 146..878 | 17..751 | 3625 | 99.7 | Plus |
Trf4-2-RA | 1870 | CG17462-RA | 356..1088 | 17..751 | 3625 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:26:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24925571..24926303 | 17..751 | 3575 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:26:58 has no hits.
BS15084.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:16:39 Download gff for
BS15084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17462-PA | 1..733 | 17..751 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:49:55 Download gff for
BS15084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17462-PA | 1..733 | 17..751 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:28:47 Download gff for
BS15084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trf4-2-RA | 356..1088 | 17..751 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:43:27 Download gff for
BS15084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trf4-2-RA | 356..1088 | 17..751 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:43:27 Download gff for
BS15084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24925571..24926303 | 17..751 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:28:47 Download gff for
BS15084.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20751293..20752025 | 17..751 | 99 | | Plus |
BS15084.pep Sequence
Translation from 16 to 1239
> BS15084.pep
MCDEANPAKPWQLPDVVYGNGIPALCLLHQEIEQFYNYIRSTPTEFCLRA
GAVRRIEDVVLSIWPSASVDLFGSFRTGLNLPDSDIDLVVYYKFWNPRLL
HELQNELVSQGVTDPDTVTVLDKASVPVVKFTDLISRIRFDVTFNSVASG
VQAADLIKDFIRHFPELPKLVMVLKQFLSLHGFNEVYNSGGVSSYALTLM
VISFLQQHARSNRRLSEHSKLALLLIQFLDYYGRKFDFFKYGISVLGQGG
CVEKARLRSTLGENNWQSVLCIEDPVTPTNDIGRSSYGVLGVMQGFGAAF
VKLSKLVDSDSSKIVGPILANIVEVPQSIINYRAWVHYNFQHLLTPELPC
ADSLVQPSPTGSTSPSASASASEDERSGGPATIGFGRCDDPPQNIDIVAD
LANLKMN*
BS15084.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:54:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trf4-2-PB | 407 | CG17462-PB | 1..407 | 1..407 | 2116 | 100 | Plus |
Trf4-2-PA | 407 | CG17462-PA | 1..407 | 1..407 | 2116 | 100 | Plus |
Trf4-1-PG | 802 | CG11265-PG | 56..409 | 9..372 | 772 | 45.9 | Plus |
Trf4-1-PF | 802 | CG11265-PF | 56..409 | 9..372 | 772 | 45.9 | Plus |
Trf4-1-PJ | 1001 | CG11265-PJ | 255..608 | 9..372 | 772 | 45.9 | Plus |