Clone BS15086 Report

Search the DGRC for BS15086

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:150
Well:86
Vector:pDNR-Dual
Associated Gene/TranscriptCG1139-RA
Protein status:BS15086.pep: full length peptide match
Sequenced Size:1388

Clone Sequence Records

BS15086.complete Sequence

1388 bp assembled on 2009-12-07

GenBank Submission: KX804863

> BS15086.complete
GAAGTTATCAGTCGACATGAACGACGATATAAAAACCGTGACGGTTTACC
CAACCACACTGGAATTAACGACCCCAACAAAATCAGCGAATGGCAGTAAC
GATGATTACGATCCTCATCAGCACCGCGAGCTGAAGAATCCCACTACAAA
CTTTCAGACATTCGCCCACTTCCTGAAGGCTTCCGTGGGCACTGGCGTCC
TGGCCATGCCCAGTGCCTTCGCACACGCAGGATATGTGAATGGCACCCTT
CTCACGCTGATCATTGGATCGCTGGCCCTCTACTGCCTGCACATTTTGAT
CAAATGCATGTACATACTGTGCAAGCGGCAGCGGGTTCCCTACGTCAGCT
TTTCGCAGGCCATGAATCTGGGACTCAAACAAGGTCCACCCTGGCTGCGT
TGTTTGGCACCCATTGCCGTTCCCTTTGTAGATGGCTTCCTGGCCTTTTA
CCACTTCGGCATCTGTTGCGTCTACGTGGTTTTCATAGCGGAAAGCATAA
AGCAGCTGGTGGATGAGTATCTGGTGGTCTGGGATGTGCGAATACACATG
TGCATCATCATTGTGCCACTCCTGCTGATATATAGCATAAAGAATTTAAA
GCTACTCGCGCCTTTTTCCAGTGCAGCAAATCTTTTGCTTCTAGTGGGTT
TCGGCATCATTTTGTACTACATCTTTGAGGAGCTACCACCCCTAAGTGAA
CGAGATCCTTTTGTGGCCGCCGGAAAGTTGCCCACCTTCTTTGGCACAGT
GCTCTTTGCTCTGGAAGCAGTGGGAGTGATCCTGGCAATTGAGGAGAATA
TGGCCACGCCCAAATCCTTTGTGGGCCCCTGTGGCATTTTGAATAGTGGC
ATGTCCATAGTGCTGGGCTTGTATGTTCTGCTCGGATTCTTTGGCTACTG
GAAATATGGCAATGAGTCGGAGGGCAGTATTACACTGAATATTCCGCAGT
CTGAAATACCCGCTCAGGTGGTAAAGGTATTCTTTGCCATCACCACTTGG
ATCTCATATGCCTTGCAGGGCTATGTGACTGCCCACATCCTGTGGGATAA
ATACTTGGCCAAGCGCTTCAAGGAAACCAGGCAGACATTCTATGAACTGA
TTTTCAGAGCCATAATCGTGCTGCTCACTTTTGGCTGCGCGGTTGCCATT
CCGGATCTATCGGTCTTCCTCTCCCTGGTTGGCTCCTTTTGCCTTTCGAT
CCTGGGCCTCATCTTCCCCGTGCTACTCCAGATCTGCGTCCAGTACACCG
AGGGCTATGGACCATTCCGGATAAAGTTGATCATCAATCTGCTGCTTTTG
TGCTTTGGCATCTTTGGCGGAGTGGTGGGCACCTATGTTAGCATTTTGGA
CATCATTGCGGTGTACAAGTAAAAGCTTTCTAGACCAT

BS15086.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:49:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG1139-RA 1356 CG1139-PA 1..1356 17..1372 6780 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:49:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG1139-RA 1578 CG1139-RA 180..1536 17..1373 6785 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1974001..1974243 1131..1373 1215 100 Plus
3L 28110227 3L 1973038..1973266 421..649 1145 100 Plus
3L 28110227 3L 1973535..1973714 778..957 900 100 Plus
3L 28110227 3L 1973772..1973944 958..1130 865 100 Plus
3L 28110227 3L 1972263..1972413 148..298 755 100 Plus
3L 28110227 3L 1973338..1973469 647..778 660 100 Plus
3L 28110227 3L 1972074..1972199 22..147 630 100 Plus
3L 28110227 3L 1972476..1972598 298..420 615 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:49:23 has no hits.

BS15086.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:41:48 Download gff for BS15086.complete
Subject Subject Range Query Range Percent Splice Strand
CG1139-RA 156..1509 17..1370 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:58:49 Download gff for BS15086.complete
Subject Subject Range Query Range Percent Splice Strand
CG1139-RA 180..1533 17..1370 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:21:48 Download gff for BS15086.complete
Subject Subject Range Query Range Percent Splice Strand
CG1139-RA 156..1509 17..1370 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:57:43 Download gff for BS15086.complete
Subject Subject Range Query Range Percent Splice Strand
CG1139-RA 180..1533 17..1370 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:57:43 Download gff for BS15086.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1973536..1973714 779..957 100 -> Plus
3L 1973772..1973944 958..1130 100 -> Plus
3L 1974001..1974240 1131..1370 100   Plus
3L 1972069..1972199 17..147 97 -> Plus
3L 1972263..1972413 148..298 100 -> Plus
3L 1972477..1972598 299..420 100 -> Plus
3L 1973038..1973264 421..647 100 -> Plus
3L 1973339..1973469 648..778 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:58:49 Download gff for BS15086.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1972069..1972199 17..147 97 -> Plus
arm_3L 1972263..1972413 148..298 100 -> Plus
arm_3L 1972477..1972598 299..420 100 -> Plus
arm_3L 1973038..1973264 421..647 100 -> Plus
arm_3L 1973339..1973469 648..778 100 -> Plus
arm_3L 1973536..1973714 779..957 100 -> Plus
arm_3L 1973772..1973944 958..1130 100 -> Plus
arm_3L 1974001..1974240 1131..1370 100   Plus

BS15086.3prime Sequence

857 bp (743 high quality bases) assembled on 2006-10-23

> BS15086.3prime
ATGGTCTAGAAAGCTTTTACTTGTACACCGCAATGATGTCCAAAATGCTA
ACATAGGTGCCCACCACTCCGCCAAAGATGCCAAAGCACAAAAGCAGCAG
ATTGATGATCAACTTTATCCGGAATGGTCCATAGCCCTCGGTGTACTGGA
CGCAGATCTGGAGTAGCACGGGGAAGATGAGGCCCAGGATCGAAAGGCAA
AAGGAGCCAACCAGGGAGAGGAAGACCGATAGATCCGGAATGGCAACCGC
GCAGCCAAAAGTGAGCAGCACGATTATGGCTCTGAAAATCAGTTCATAGA
ATGTCTGCCTGGTTTCCTTGAAGCGCTTGGCCAAGTATTTATCCCACAGG
ATGTGGGCAGTCACATAGCCCTGCAAGGCATATGAGATCCAAGTGGTGAT
GGCAAAGAATACCTTTACCACCTGAGCGGGTATTTCAGACTGCGGAATAT
TCAGTGTAATACTGCCCTCCGACTCATTGCCATATTTCCAGTAGCCAAAG
AATCCGAGCAGAACATACAAGCCCAGCACTATGGACATGCCACTATTCAA
AATGCCACAGGGGCCCACAAAGGATTTGGGCGTGGCCATATTCTCCTCAA
TTGCCAGGATCACTCCCACTGCTTCCAGAGCAAAGAGCACTGTGCCAAAG
AAGGTGGGCAACTTTCCGGCGGCCACAAAAGGATCTCGTTCACTTAGGGG
TGGTAGCTCCTCAAAGATGTAGTACAAAATGATGCCGAAACCCACTAGAA
GCAAAAGATTTGCTGCACTGGAAAAAGGCGCGAGTAGCTTTAATTCTTTA
TGCTATATATCAGCAGGAGTGGCACAATGATGATGCACATGTGTATTCGC
ACATCCC

BS15086.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG1139-PA 1356 CG1139-RA 580..1356 793..17 3885 100 Minus
CG1139-PA 1356 CG1139-RA 515..580 857..792 330 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:06:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG1139-RA 1578 CG1139-RA 694..1536 857..16 4190 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:06:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1974001..1974243 258..16 1215 100 Minus
3L 28110227 3L 1973535..1973714 611..432 900 100 Minus
3L 28110227 3L 1973772..1973944 431..259 865 100 Minus
3L 28110227 3L 1973338..1973469 742..611 660 100 Minus
3L 28110227 3L 1973148..1973266 857..740 545 99.2 Minus
Blast to na_te.dros performed on 2015-02-13 00:06:21 has no hits.

BS15086.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:16:40 Download gff for BS15086.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1139-PA 515..1356 17..857 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:49:57 Download gff for BS15086.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1139-PA 515..1356 17..857 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:22:27 Download gff for BS15086.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1139-RA 694..1539 11..857 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:38:06 Download gff for BS15086.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1139-RA 694..1539 11..857 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:38:06 Download gff for BS15086.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1973148..1973264 742..857 99 -> Minus
3L 1973339..1973469 611..741 100 -> Minus
3L 1973536..1973714 432..610 100 -> Minus
3L 1973772..1973944 259..431 100 -> Minus
3L 1974001..1974246 11..258 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:22:27 Download gff for BS15086.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1973148..1973264 742..857 99 -> Minus
arm_3L 1973339..1973469 611..741 100 -> Minus
arm_3L 1973536..1973714 432..610 100 -> Minus
arm_3L 1973772..1973944 259..431 100 -> Minus
arm_3L 1974001..1974246 11..258 99   Minus

BS15086.5prime Sequence

838 bp (721 high quality bases) assembled on 2006-10-23

> BS15086.5prime
GAAGTTATCCTTCGACATGAACGACGATATAAAAACCGTGACGGTTTACC
CAACCACACTGGAATTAACGACCCCAACAAAATCATCGAATGGCAGTAAC
GATGATTACGATCCTCATCAGCACCGCGAGCTGAAGAATCCCACTACAAA
CTTTCAGACATTCGCCCACTTCCTGAAGGCTTCCGTGGGCACTGGCGTCC
TGGCCATGCCCAGTGCCTTCGCACACGCAGGATATGTGAATGGCACCCTT
CTCACGCTGATCATTGGATCGCTGGCCCTCTACTGCCTGCACATTTTGAT
CAAATGCATGTACATACTGTGCAAGCGGCAGCGGGTTCCCTACGTCAGCT
TTTCGCAGGCCATGAATCTGGGACTCAAACAAGGTCCACCCTGGCTGCGT
TGTTTGGCACCCATTGCCGTTCCCTTTGTAGATGGCTTCCTGGCCTTTTA
CCACTTCGGCATCTGTTGCGTCTACGTGGTTTTCATAGCGGAAAGCATAA
AGCAGCTGGTGGATGAGTATCTGGTGGTCTGGGATGTGCGAATACACATG
TGCATCATCATTGTGCCACTCCTGCTGATATATAGCATAAAGAATTTAAA
GCTACTCGCGCCTTTTTCCAGTGCAGCAAATCTTTTGCTTCTAGTGGGTT
TCGGCATCATTTTGTACTACATCTTTGAGGAGCTACCACCCCTAAGTGAA
CGAGATCCTTTTGTGGCCGCCGGAAAGTTGCCCACCTTCTTTGGCACAGT
GCTCTTTGCTCTGGAAGCAGTGGGAGTGATCCTGGCAATTGAGGAGAATA
TGGCCACGCCCAAATCCTTTGTGGGCCCCTGTGGCATT

BS15086.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG1139-PA 1356 CG1139-RA 1..822 17..838 4085 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:27:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG1139-RA 1578 CG1139-RA 180..1001 17..838 4095 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:27:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1973038..1973266 421..649 1145 100 Plus
3L 28110227 3L 1972263..1972413 148..298 755 100 Plus
3L 28110227 3L 1973338..1973469 647..778 660 100 Plus
3L 28110227 3L 1972074..1972199 22..147 615 99.2 Plus
3L 28110227 3L 1972476..1972598 298..420 615 100 Plus
3L 28110227 3L 1973535..1973595 778..838 305 100 Plus
Blast to na_te.dros performed on 2015-02-13 15:27:13 has no hits.

BS15086.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:16:41 Download gff for BS15086.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1139-PA 1..822 17..838 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:49:59 Download gff for BS15086.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1139-PA 1..822 17..838 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:54:13 Download gff for BS15086.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1139-RA 175..1001 12..838 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:49:01 Download gff for BS15086.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1139-RA 175..1001 12..838 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:49:01 Download gff for BS15086.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1973536..1973595 779..838 100   Plus
3L 1972070..1972199 15..147 96 -> Plus
3L 1972263..1972413 148..298 100 -> Plus
3L 1972477..1972598 299..420 100 -> Plus
3L 1973038..1973264 421..647 100 -> Plus
3L 1973339..1973469 648..778 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:54:13 Download gff for BS15086.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1972070..1972199 15..147 96 -> Plus
arm_3L 1972263..1972413 148..298 100 -> Plus
arm_3L 1972477..1972598 299..420 100 -> Plus
arm_3L 1973038..1973264 421..647 100 -> Plus
arm_3L 1973339..1973469 648..778 100 -> Plus
arm_3L 1973536..1973595 779..838 100   Plus

BS15086.pep Sequence

Translation from 16 to 1371

> BS15086.pep
MNDDIKTVTVYPTTLELTTPTKSANGSNDDYDPHQHRELKNPTTNFQTFA
HFLKASVGTGVLAMPSAFAHAGYVNGTLLTLIIGSLALYCLHILIKCMYI
LCKRQRVPYVSFSQAMNLGLKQGPPWLRCLAPIAVPFVDGFLAFYHFGIC
CVYVVFIAESIKQLVDEYLVVWDVRIHMCIIIVPLLLIYSIKNLKLLAPF
SSAANLLLLVGFGIILYYIFEELPPLSERDPFVAAGKLPTFFGTVLFALE
AVGVILAIEENMATPKSFVGPCGILNSGMSIVLGLYVLLGFFGYWKYGNE
SEGSITLNIPQSEIPAQVVKVFFAITTWISYALQGYVTAHILWDKYLAKR
FKETRQTFYELIFRAIIVLLTFGCAVAIPDLSVFLSLVGSFCLSILGLIF
PVLLQICVQYTEGYGPFRIKLIINLLLLCFGIFGGVVGTYVSILDIIAVY
K*

BS15086.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:44:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG1139-PA 451 CG1139-PA 1..451 1..451 2340 100 Plus
CG7888-PA 462 CG7888-PA 12..460 8..450 989 44.1 Plus
CG7888-PC 462 CG7888-PC 12..460 8..450 989 44.1 Plus
CG7888-PB 465 CG7888-PB 15..463 8..450 989 44.1 Plus
CG43693-PF 455 CG43693-PF 3..451 4..450 923 40.7 Plus