Clone Sequence Records
BS15086.complete Sequence
1388 bp assembled on 2009-12-07
GenBank Submission: KX804863
> BS15086.complete
GAAGTTATCAGTCGACATGAACGACGATATAAAAACCGTGACGGTTTACC
CAACCACACTGGAATTAACGACCCCAACAAAATCAGCGAATGGCAGTAAC
GATGATTACGATCCTCATCAGCACCGCGAGCTGAAGAATCCCACTACAAA
CTTTCAGACATTCGCCCACTTCCTGAAGGCTTCCGTGGGCACTGGCGTCC
TGGCCATGCCCAGTGCCTTCGCACACGCAGGATATGTGAATGGCACCCTT
CTCACGCTGATCATTGGATCGCTGGCCCTCTACTGCCTGCACATTTTGAT
CAAATGCATGTACATACTGTGCAAGCGGCAGCGGGTTCCCTACGTCAGCT
TTTCGCAGGCCATGAATCTGGGACTCAAACAAGGTCCACCCTGGCTGCGT
TGTTTGGCACCCATTGCCGTTCCCTTTGTAGATGGCTTCCTGGCCTTTTA
CCACTTCGGCATCTGTTGCGTCTACGTGGTTTTCATAGCGGAAAGCATAA
AGCAGCTGGTGGATGAGTATCTGGTGGTCTGGGATGTGCGAATACACATG
TGCATCATCATTGTGCCACTCCTGCTGATATATAGCATAAAGAATTTAAA
GCTACTCGCGCCTTTTTCCAGTGCAGCAAATCTTTTGCTTCTAGTGGGTT
TCGGCATCATTTTGTACTACATCTTTGAGGAGCTACCACCCCTAAGTGAA
CGAGATCCTTTTGTGGCCGCCGGAAAGTTGCCCACCTTCTTTGGCACAGT
GCTCTTTGCTCTGGAAGCAGTGGGAGTGATCCTGGCAATTGAGGAGAATA
TGGCCACGCCCAAATCCTTTGTGGGCCCCTGTGGCATTTTGAATAGTGGC
ATGTCCATAGTGCTGGGCTTGTATGTTCTGCTCGGATTCTTTGGCTACTG
GAAATATGGCAATGAGTCGGAGGGCAGTATTACACTGAATATTCCGCAGT
CTGAAATACCCGCTCAGGTGGTAAAGGTATTCTTTGCCATCACCACTTGG
ATCTCATATGCCTTGCAGGGCTATGTGACTGCCCACATCCTGTGGGATAA
ATACTTGGCCAAGCGCTTCAAGGAAACCAGGCAGACATTCTATGAACTGA
TTTTCAGAGCCATAATCGTGCTGCTCACTTTTGGCTGCGCGGTTGCCATT
CCGGATCTATCGGTCTTCCTCTCCCTGGTTGGCTCCTTTTGCCTTTCGAT
CCTGGGCCTCATCTTCCCCGTGCTACTCCAGATCTGCGTCCAGTACACCG
AGGGCTATGGACCATTCCGGATAAAGTTGATCATCAATCTGCTGCTTTTG
TGCTTTGGCATCTTTGGCGGAGTGGTGGGCACCTATGTTAGCATTTTGGA
CATCATTGCGGTGTACAAGTAAAAGCTTTCTAGACCAT
BS15086.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:49:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1139-RA | 1356 | CG1139-PA | 1..1356 | 17..1372 | 6780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:49:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1139-RA | 1578 | CG1139-RA | 180..1536 | 17..1373 | 6785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1974001..1974243 | 1131..1373 | 1215 | 100 | Plus |
3L | 28110227 | 3L | 1973038..1973266 | 421..649 | 1145 | 100 | Plus |
3L | 28110227 | 3L | 1973535..1973714 | 778..957 | 900 | 100 | Plus |
3L | 28110227 | 3L | 1973772..1973944 | 958..1130 | 865 | 100 | Plus |
3L | 28110227 | 3L | 1972263..1972413 | 148..298 | 755 | 100 | Plus |
3L | 28110227 | 3L | 1973338..1973469 | 647..778 | 660 | 100 | Plus |
3L | 28110227 | 3L | 1972074..1972199 | 22..147 | 630 | 100 | Plus |
3L | 28110227 | 3L | 1972476..1972598 | 298..420 | 615 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:49:23 has no hits.
BS15086.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:41:48 Download gff for
BS15086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1139-RA | 156..1509 | 17..1370 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:58:49 Download gff for
BS15086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1139-RA | 180..1533 | 17..1370 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:21:48 Download gff for
BS15086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1139-RA | 156..1509 | 17..1370 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:57:43 Download gff for
BS15086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1139-RA | 180..1533 | 17..1370 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:57:43 Download gff for
BS15086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1973536..1973714 | 779..957 | 100 | -> | Plus |
3L | 1973772..1973944 | 958..1130 | 100 | -> | Plus |
3L | 1974001..1974240 | 1131..1370 | 100 | | Plus |
3L | 1972069..1972199 | 17..147 | 97 | -> | Plus |
3L | 1972263..1972413 | 148..298 | 100 | -> | Plus |
3L | 1972477..1972598 | 299..420 | 100 | -> | Plus |
3L | 1973038..1973264 | 421..647 | 100 | -> | Plus |
3L | 1973339..1973469 | 648..778 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:58:49 Download gff for
BS15086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1972069..1972199 | 17..147 | 97 | -> | Plus |
arm_3L | 1972263..1972413 | 148..298 | 100 | -> | Plus |
arm_3L | 1972477..1972598 | 299..420 | 100 | -> | Plus |
arm_3L | 1973038..1973264 | 421..647 | 100 | -> | Plus |
arm_3L | 1973339..1973469 | 648..778 | 100 | -> | Plus |
arm_3L | 1973536..1973714 | 779..957 | 100 | -> | Plus |
arm_3L | 1973772..1973944 | 958..1130 | 100 | -> | Plus |
arm_3L | 1974001..1974240 | 1131..1370 | 100 | | Plus |
BS15086.3prime Sequence
857 bp (743 high quality bases) assembled on 2006-10-23
> BS15086.3prime
ATGGTCTAGAAAGCTTTTACTTGTACACCGCAATGATGTCCAAAATGCTA
ACATAGGTGCCCACCACTCCGCCAAAGATGCCAAAGCACAAAAGCAGCAG
ATTGATGATCAACTTTATCCGGAATGGTCCATAGCCCTCGGTGTACTGGA
CGCAGATCTGGAGTAGCACGGGGAAGATGAGGCCCAGGATCGAAAGGCAA
AAGGAGCCAACCAGGGAGAGGAAGACCGATAGATCCGGAATGGCAACCGC
GCAGCCAAAAGTGAGCAGCACGATTATGGCTCTGAAAATCAGTTCATAGA
ATGTCTGCCTGGTTTCCTTGAAGCGCTTGGCCAAGTATTTATCCCACAGG
ATGTGGGCAGTCACATAGCCCTGCAAGGCATATGAGATCCAAGTGGTGAT
GGCAAAGAATACCTTTACCACCTGAGCGGGTATTTCAGACTGCGGAATAT
TCAGTGTAATACTGCCCTCCGACTCATTGCCATATTTCCAGTAGCCAAAG
AATCCGAGCAGAACATACAAGCCCAGCACTATGGACATGCCACTATTCAA
AATGCCACAGGGGCCCACAAAGGATTTGGGCGTGGCCATATTCTCCTCAA
TTGCCAGGATCACTCCCACTGCTTCCAGAGCAAAGAGCACTGTGCCAAAG
AAGGTGGGCAACTTTCCGGCGGCCACAAAAGGATCTCGTTCACTTAGGGG
TGGTAGCTCCTCAAAGATGTAGTACAAAATGATGCCGAAACCCACTAGAA
GCAAAAGATTTGCTGCACTGGAAAAAGGCGCGAGTAGCTTTAATTCTTTA
TGCTATATATCAGCAGGAGTGGCACAATGATGATGCACATGTGTATTCGC
ACATCCC
BS15086.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1139-PA | 1356 | CG1139-RA | 580..1356 | 793..17 | 3885 | 100 | Minus |
CG1139-PA | 1356 | CG1139-RA | 515..580 | 857..792 | 330 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:06:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1139-RA | 1578 | CG1139-RA | 694..1536 | 857..16 | 4190 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:06:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1974001..1974243 | 258..16 | 1215 | 100 | Minus |
3L | 28110227 | 3L | 1973535..1973714 | 611..432 | 900 | 100 | Minus |
3L | 28110227 | 3L | 1973772..1973944 | 431..259 | 865 | 100 | Minus |
3L | 28110227 | 3L | 1973338..1973469 | 742..611 | 660 | 100 | Minus |
3L | 28110227 | 3L | 1973148..1973266 | 857..740 | 545 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:06:21 has no hits.
BS15086.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:16:40 Download gff for
BS15086.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1139-PA | 515..1356 | 17..857 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:49:57 Download gff for
BS15086.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1139-PA | 515..1356 | 17..857 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:22:27 Download gff for
BS15086.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1139-RA | 694..1539 | 11..857 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:38:06 Download gff for
BS15086.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1139-RA | 694..1539 | 11..857 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:38:06 Download gff for
BS15086.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1973148..1973264 | 742..857 | 99 | -> | Minus |
3L | 1973339..1973469 | 611..741 | 100 | -> | Minus |
3L | 1973536..1973714 | 432..610 | 100 | -> | Minus |
3L | 1973772..1973944 | 259..431 | 100 | -> | Minus |
3L | 1974001..1974246 | 11..258 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:22:27 Download gff for
BS15086.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1973148..1973264 | 742..857 | 99 | -> | Minus |
arm_3L | 1973339..1973469 | 611..741 | 100 | -> | Minus |
arm_3L | 1973536..1973714 | 432..610 | 100 | -> | Minus |
arm_3L | 1973772..1973944 | 259..431 | 100 | -> | Minus |
arm_3L | 1974001..1974246 | 11..258 | 99 | | Minus |
BS15086.5prime Sequence
838 bp (721 high quality bases) assembled on 2006-10-23
> BS15086.5prime
GAAGTTATCCTTCGACATGAACGACGATATAAAAACCGTGACGGTTTACC
CAACCACACTGGAATTAACGACCCCAACAAAATCATCGAATGGCAGTAAC
GATGATTACGATCCTCATCAGCACCGCGAGCTGAAGAATCCCACTACAAA
CTTTCAGACATTCGCCCACTTCCTGAAGGCTTCCGTGGGCACTGGCGTCC
TGGCCATGCCCAGTGCCTTCGCACACGCAGGATATGTGAATGGCACCCTT
CTCACGCTGATCATTGGATCGCTGGCCCTCTACTGCCTGCACATTTTGAT
CAAATGCATGTACATACTGTGCAAGCGGCAGCGGGTTCCCTACGTCAGCT
TTTCGCAGGCCATGAATCTGGGACTCAAACAAGGTCCACCCTGGCTGCGT
TGTTTGGCACCCATTGCCGTTCCCTTTGTAGATGGCTTCCTGGCCTTTTA
CCACTTCGGCATCTGTTGCGTCTACGTGGTTTTCATAGCGGAAAGCATAA
AGCAGCTGGTGGATGAGTATCTGGTGGTCTGGGATGTGCGAATACACATG
TGCATCATCATTGTGCCACTCCTGCTGATATATAGCATAAAGAATTTAAA
GCTACTCGCGCCTTTTTCCAGTGCAGCAAATCTTTTGCTTCTAGTGGGTT
TCGGCATCATTTTGTACTACATCTTTGAGGAGCTACCACCCCTAAGTGAA
CGAGATCCTTTTGTGGCCGCCGGAAAGTTGCCCACCTTCTTTGGCACAGT
GCTCTTTGCTCTGGAAGCAGTGGGAGTGATCCTGGCAATTGAGGAGAATA
TGGCCACGCCCAAATCCTTTGTGGGCCCCTGTGGCATT
BS15086.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:13:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1139-PA | 1356 | CG1139-RA | 1..822 | 17..838 | 4085 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:27:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1139-RA | 1578 | CG1139-RA | 180..1001 | 17..838 | 4095 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:27:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1973038..1973266 | 421..649 | 1145 | 100 | Plus |
3L | 28110227 | 3L | 1972263..1972413 | 148..298 | 755 | 100 | Plus |
3L | 28110227 | 3L | 1973338..1973469 | 647..778 | 660 | 100 | Plus |
3L | 28110227 | 3L | 1972074..1972199 | 22..147 | 615 | 99.2 | Plus |
3L | 28110227 | 3L | 1972476..1972598 | 298..420 | 615 | 100 | Plus |
3L | 28110227 | 3L | 1973535..1973595 | 778..838 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:27:13 has no hits.
BS15086.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:16:41 Download gff for
BS15086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1139-PA | 1..822 | 17..838 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:49:59 Download gff for
BS15086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1139-PA | 1..822 | 17..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:54:13 Download gff for
BS15086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1139-RA | 175..1001 | 12..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:49:01 Download gff for
BS15086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1139-RA | 175..1001 | 12..838 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:49:01 Download gff for
BS15086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1973536..1973595 | 779..838 | 100 | | Plus |
3L | 1972070..1972199 | 15..147 | 96 | -> | Plus |
3L | 1972263..1972413 | 148..298 | 100 | -> | Plus |
3L | 1972477..1972598 | 299..420 | 100 | -> | Plus |
3L | 1973038..1973264 | 421..647 | 100 | -> | Plus |
3L | 1973339..1973469 | 648..778 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:54:13 Download gff for
BS15086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1972070..1972199 | 15..147 | 96 | -> | Plus |
arm_3L | 1972263..1972413 | 148..298 | 100 | -> | Plus |
arm_3L | 1972477..1972598 | 299..420 | 100 | -> | Plus |
arm_3L | 1973038..1973264 | 421..647 | 100 | -> | Plus |
arm_3L | 1973339..1973469 | 648..778 | 100 | -> | Plus |
arm_3L | 1973536..1973595 | 779..838 | 100 | | Plus |
BS15086.pep Sequence
Translation from 16 to 1371
> BS15086.pep
MNDDIKTVTVYPTTLELTTPTKSANGSNDDYDPHQHRELKNPTTNFQTFA
HFLKASVGTGVLAMPSAFAHAGYVNGTLLTLIIGSLALYCLHILIKCMYI
LCKRQRVPYVSFSQAMNLGLKQGPPWLRCLAPIAVPFVDGFLAFYHFGIC
CVYVVFIAESIKQLVDEYLVVWDVRIHMCIIIVPLLLIYSIKNLKLLAPF
SSAANLLLLVGFGIILYYIFEELPPLSERDPFVAAGKLPTFFGTVLFALE
AVGVILAIEENMATPKSFVGPCGILNSGMSIVLGLYVLLGFFGYWKYGNE
SEGSITLNIPQSEIPAQVVKVFFAITTWISYALQGYVTAHILWDKYLAKR
FKETRQTFYELIFRAIIVLLTFGCAVAIPDLSVFLSLVGSFCLSILGLIF
PVLLQICVQYTEGYGPFRIKLIINLLLLCFGIFGGVVGTYVSILDIIAVY
K*
BS15086.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:44:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1139-PA | 451 | CG1139-PA | 1..451 | 1..451 | 2340 | 100 | Plus |
CG7888-PA | 462 | CG7888-PA | 12..460 | 8..450 | 989 | 44.1 | Plus |
CG7888-PC | 462 | CG7888-PC | 12..460 | 8..450 | 989 | 44.1 | Plus |
CG7888-PB | 465 | CG7888-PB | 15..463 | 8..450 | 989 | 44.1 | Plus |
CG43693-PF | 455 | CG43693-PF | 3..451 | 4..450 | 923 | 40.7 | Plus |