Clone BS15093 Report

Search the DGRC for BS15093

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:150
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptCG13365-RA
Protein status:BS15093.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15093.3prime Sequence

375 bp (375 high quality bases) assembled on 2006-10-23

> BS15093.3prime
ATGGTCTAGAAAGCTTTTACTCCTTGACCCGCTCCACCTCGCTGGCGTCG
AAGGGCACCTCCTCCACCTTGTGGAATCCAGAGAACCTGATGATCTTGCC
GGTCCCCTCGACCTTCAGGTGCTTGGCGAACTGTTGGGCCGGCGAAAGGG
CCATCTCCTCCTCCGTCTTGTAGCCGTAGTACTTGGCCCAGTCGTTGCGT
CCGGTGTAGACCATATAGCAAACGAGGCCGAATGCCTGCCAGGCCAGAAC
GGCGTACCCGATGCTCAGGCGCCGCTTCCACAGCTCCGCCCGGTGCTCCG
GTATGGGATTCGTGTTGCGCCGCACCCAGCGGCGCAGCCACTTCATCTCG
AACAGTGCCATGTCGACTGATAACT

BS15093.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:14:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG13365-PA 345 CG13365-RA 1..345 361..17 1725 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:07:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG13365-RA 499 CG13365-RA 71..415 361..17 1725 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:07:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 620801..621145 17..361 1725 100 Plus
X 23542271 X 620419..620598 18..197 690 92.2 Plus
Blast to na_te.dros performed on 2015-02-13 00:07:34 has no hits.

BS15093.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:16:49 Download gff for BS15093.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13365-PA 1..345 17..361 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:50:09 Download gff for BS15093.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13365-PA 1..345 17..361 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:22:30 Download gff for BS15093.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13365-RA 65..415 17..369 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:40:26 Download gff for BS15093.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13365-RA 65..415 17..369 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:40:26 Download gff for BS15093.3prime
Subject Subject Range Query Range Percent Splice Strand
X 620801..621149 17..369 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:22:30 Download gff for BS15093.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 514834..515182 17..369 98   Plus

BS15093.5prime Sequence

375 bp (375 high quality bases) assembled on 2006-10-23

> BS15093.5prime
GAAGTTATCAGTCGACATGGCACTGTTCGAGATGAAGTGGCTGCGCCGCT
GGGTGCGGCGCAACACGAATCCCATACCGGAGCACCGGGCGGAGCTGTGG
AAGCGGCGCCTGAGCATCGGGTACGCCGTTCTGGCCTGGCAGGCATTCGG
CCTCGTTTGCTATATGGTCTACACCGGACGCAACGACTGGGCCAAGTACT
ACGGCTACAAGACGGAGGAGGAGATGGCCCTTTCGCCGGCCCAACAGTTC
GCCAAGCACCTGAAGGTCGAGGGGACCGGCAAGATCATCAGGTTCTCTGG
ATTCCACAAGGTGGAGGAGGTGCCCTTCGACGCCAGCGAGGTGGAGCGGG
TCAAGGAGTAAAAGCTTTCTAGACC

BS15093.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:14:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG13365-PA 345 CG13365-RA 1..345 17..361 1725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:50:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG13365-RA 499 CG13365-RA 71..415 17..361 1725 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:50:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 620801..621145 361..17 1725 100 Minus
X 23542271 X 620419..620598 360..181 690 92.2 Minus
Blast to na_te.dros performed on 2015-02-12 23:50:28 has no hits.

BS15093.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:16:50 Download gff for BS15093.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13365-PA 1..345 17..361 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:50:10 Download gff for BS15093.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13365-PA 1..345 17..361 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:21:42 Download gff for BS15093.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13365-RA 65..415 9..361 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:17:01 Download gff for BS15093.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13365-RA 65..415 9..361 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:17:01 Download gff for BS15093.5prime
Subject Subject Range Query Range Percent Splice Strand
X 620801..621149 9..361 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:21:42 Download gff for BS15093.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 514834..515182 9..361 98   Minus

BS15093.complete Sequence

377 bp assembled on 2006-11-01

GenBank Submission: FJ637872

> BS15093.complete
GAAGTTATCAGTCGACATGGCACTGTTCGAGATGAAGTGGCTGCGCCGCT
GGGTGCGGCGCAACACGAATCCCATACCGGAGCACCGGGCGGAGCTGTGG
AAGCGGCGCCTGAGCATCGGGTACGCCGTTCTGGCCTGGCAGGCATTCGG
CCTCGTTTGCTATATGGTCTACACCGGACGCAACGACTGGGCCAAGTACT
ACGGCTACAAGACGGAGGAGGAGATGGCCCTTTCGCCGGCCCAACAGTTC
GCCAAGCACCTGAAGGTCGAGGGGACCGGCAAGATCATCAGGTTCTCTGG
ATTCCACAAGGTGGAGGAGGTGCCCTTCGACGCCAGCGAGGTGGAGCGGG
TCAAGGAGTAAAAGCTTTCTAGACCAT

BS15093.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:03:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG13365-RA 345 CG13365-PA 1..345 17..361 1725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG13365-RA 499 CG13365-RA 71..415 17..361 1725 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:03:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 620801..621145 361..17 1725 100 Minus
X 23542271 X 620419..620598 360..181 690 92.2 Minus
Blast to na_te.dros performed on 2014-11-27 15:03:23 has no hits.

BS15093.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:33:33 Download gff for BS15093.complete
Subject Subject Range Query Range Percent Splice Strand
CG13365-RA 1..345 17..361 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:06:13 Download gff for BS15093.complete
Subject Subject Range Query Range Percent Splice Strand
CG13365-RA 58..408 9..361 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:36:38 Download gff for BS15093.complete
Subject Subject Range Query Range Percent Splice Strand
CG13365-RA 71..413 17..359 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:33:33 Download gff for BS15093.complete
Subject Subject Range Query Range Percent Splice Strand
CG13365-RA 58..408 9..361 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:57 Download gff for BS15093.complete
Subject Subject Range Query Range Percent Splice Strand
CG13365-RA 71..413 17..359 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:58:57 Download gff for BS15093.complete
Subject Subject Range Query Range Percent Splice Strand
X 620803..621145 17..359 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:36:38 Download gff for BS15093.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 514836..515178 17..359 100   Minus

BS15093.pep Sequence

Translation from 16 to 360

> BS15093.pep
MALFEMKWLRRWVRRNTNPIPEHRAELWKRRLSIGYAVLAWQAFGLVCYM
VYTGRNDWAKYYGYKTEEEMALSPAQQFAKHLKVEGTGKIIRFSGFHKVE
EVPFDASEVERVKE*

BS15093.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:26:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG13365-PA 114 CG13365-PA 1..114 1..114 616 100 Plus